Erik Holmqvist

The pcnB gene sustains Shigella flexneri virulence

Frisch, Thibault; Geiser, Petra; Komi, Margarita; Karlsson, Philip A. et al.

Ingår i PLoS Pathogens, 2025

• DOI för The pcnB gene sustains Shigella flexneri virulence

ProQ prevents mRNA degradation through inhibition of poly(A) polymerase

Bergman, Sofia; Birk, Christopher; Holmqvist, Erik

Ingår i Nucleic Acids Research, 2025

• DOI för ProQ prevents mRNA degradation through inhibition of poly(A) polymerase
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Global Identification of RNA-Binding Proteins in Bacteria

Stenum, Thomas Søndergaard; Holmqvist, Erik

Ingår i Methods in Molecular Biology, s. 347-361, 2024

• DOI för Global Identification of RNA-Binding Proteins in Bacteria

An RNA pseudoknot mediates toxin translation and antitoxin inhibition

Eleftheraki, Athina; Holmqvist, Erik

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2024

• DOI för An RNA pseudoknot mediates toxin translation and antitoxin inhibition
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ProQ-dependent activation of Salmonella virulence genes mediated by post-transcriptional control of PhoP synthesis

Bergman, Sofia; Andresen, Liis; Kjellin, Jonas; Burgo, Yolanda Martinez et al.

Ingår i mSphere, 2024

• DOI för ProQ-dependent activation of Salmonella virulence genes mediated by post-transcriptional control of PhoP synthesis
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The pcnB gene sustains Shigella flexneri virulence

Frisch, Thibault; Geiser, Petra; Komi, Margarita; Karlsson, Philip A. et al.

Ingår i PLoS Pathogens, 2025

• DOI för The pcnB gene sustains Shigella flexneri virulence

ProQ prevents mRNA degradation through inhibition of poly(A) polymerase

Bergman, Sofia; Birk, Christopher; Holmqvist, Erik

Ingår i Nucleic Acids Research, 2025

• DOI för ProQ prevents mRNA degradation through inhibition of poly(A) polymerase
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Global Identification of RNA-Binding Proteins in Bacteria

Stenum, Thomas Søndergaard; Holmqvist, Erik

Ingår i Methods in Molecular Biology, s. 347-361, 2024

• DOI för Global Identification of RNA-Binding Proteins in Bacteria

An RNA pseudoknot mediates toxin translation and antitoxin inhibition

Eleftheraki, Athina; Holmqvist, Erik

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2024

• DOI för An RNA pseudoknot mediates toxin translation and antitoxin inhibition
• Ladda ner fulltext (pdf) av An RNA pseudoknot mediates toxin translation and antitoxin inhibition

ProQ-dependent activation of Salmonella virulence genes mediated by post-transcriptional control of PhoP synthesis

Bergman, Sofia; Andresen, Liis; Kjellin, Jonas; Burgo, Yolanda Martinez et al.

Ingår i mSphere, 2024

• DOI för ProQ-dependent activation of Salmonella virulence genes mediated by post-transcriptional control of PhoP synthesis
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Rescue of Escherichia coli auxotrophy by de novo small proteins

Babina, Arianne M.; Surkov, Serhiy; Ye, Weihua; Jerlström-Hultqvist, Jon et al.

Ingår i eLIFE, 2023

• DOI för Rescue of Escherichia coli auxotrophy by de novo small proteins
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RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins

Stenum, Thomas Søndergaard; Kumar, Ankith D.; Sandbaumhueter, Friederike A.; Kjellin, Jonas et al.

Ingår i Nucleic Acids Research, s. 4572-4587, 2023

• DOI för RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins
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CsrA enters Hfq's territory: Regulation of a base-pairing small RNA

Søndergaard Stenum, Thomas; Holmqvist, Erik

Ingår i Molecular Microbiology, s. 4-9, 2022

• DOI för CsrA enters Hfq's territory: Regulation of a base-pairing small RNA
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The RNA-binding protein ProQ promotes antibiotic persistence in Salmonella

Rizvanovic, Alisa; Michaux, Charlotte; Panza, Margherita; Iloglu, Zeynep et al.

Ingår i Molecular and Cellular Biology, 2022

• DOI för The RNA-binding protein ProQ promotes antibiotic persistence in Salmonella
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Three Ribosomal Operons of Escherichia coli Contain Genes Encoding Small RNAs That Interact With Hfq and CsrA in vitro

Stenum, Thomas Søndergaard; Kongstad, Mette; Holmqvist, Erik; Kallipolitis, Birgitte et al.

Ingår i Frontiers in Microbiology, 2021

• DOI för Three Ribosomal Operons of Escherichia coli Contain Genes Encoding Small RNAs That Interact With Hfq and CsrA in vitro

Saturation mutagenesis charts the functional landscape of Salmonella ProQ and reveals a gene regulatory function of its C-terminal domain

Rizvanovic, Alisa; Kjellin, Jonas; Söderbom, Fredrik; Holmqvist, Erik

Ingår i Nucleic Acids Research, s. 9992-10006, 2021

• DOI för Saturation mutagenesis charts the functional landscape of Salmonella ProQ and reveals a gene regulatory function of its C-terminal domain
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The Small Toxic Salmonella Protein TimP Targets the Cytoplasmic Membrane and Is Repressed by the Small RNA TimR

Andresen, Liis; Martinez-Burgo, Yolanda; Nilsson Zangelin, Josefin; Rizvanovic, Alisa et al.

Ingår i mBio, 2020

• DOI för The Small Toxic Salmonella Protein TimP Targets the Cytoplasmic Membrane and Is Repressed by the Small RNA TimR
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Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM

Romilly, Cedric; Hoekzema, Mirthe; Holmqvist, Erik; Wagner, Gerhart E. H.

Ingår i RNA Biology, s. 872-880, 2020

• DOI för Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM
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The Length of a DNA T-Tract Modulates Expression of a Virulence-Regulating sRNA

Wagner, E. Gerhart H.; Holmqvist, Erik

Ingår i Molecular Cell, s. 175-177, 2020

• DOI för The Length of a DNA T-Tract Modulates Expression of a Virulence-Regulating sRNA

Hfq-dependent mRNA unfolding promotes sRNA-based inhibition of translation

Hoekzema, Mirthe; Romilly, Cedric; Holmqvist, Erik; Wagner, Gerhart E. H.

Ingår i EMBO Journal, 2019

• DOI för Hfq-dependent mRNA unfolding promotes sRNA-based inhibition of translation
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Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3 ' Ends

Holmqvist, Erik; Li, Lei; Bischler, Thorsten; Barquist, Lars et al.

Ingår i Molecular Cell, s. 971-982, 2018

• DOI för Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3 ' Ends

Structure of the Escherichia coli ProQ RNA-binding protein

Gonzalez, Grecia M.; Hardwick, Steven W.; Maslen, Sarah L.; Skehel, J. Mark et al.

Ingår i RNA, s. 696-711, 2017

• DOI för Structure of the Escherichia coli ProQ RNA-binding protein
• Ladda ner fulltext (pdf) av Structure of the Escherichia coli ProQ RNA-binding protein

Massive functional mapping of a 5'-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing

Holmqvist, Erik; Reimegard, Johan; Wagner, Gerhart E. H.

Ingår i Nucleic Acids Research, 2013

• DOI för Massive functional mapping of a 5'-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing
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A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp

Holmqvist, Erik; Unoson, Cecilia; Reimegård, Johan; Wagner, Gerhart E. H.

Ingår i Molecular Microbiology, s. 414-427, 2012

• DOI för A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp

Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

Holmqvist, Erik; Reimegård, Johan; Sterk, Maaike; Grantcharova, Nina et al.

Ingår i EMBO Journal, s. 1840-1850, 2010

• DOI för Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

Sensory ataxic neuropathy in golden retriever dogs is caused by a deletion in the mitochondrial tRNA^Tyr gene

Baranowska, Izabella; Jäderlund, Karin Hultin; Nennesmo, Inger; Holmqvist, Erik et al.

Ingår i PLoS Genetics, 2009

• DOI för Sensory ataxic neuropathy in golden retriever dogs is caused by a deletion in the mitochondrial tRNA^Tyr gene

Hfq-dependent regulation of OmpA synthesis is mediated by an an-tisense RNA.

Udekwu, Klas I; Darfeuille, Fabien; Vogel, Jörg; Reimegård, Johan et al.

Ingår i Genes & Development, s. 2355-2366, 2005

• DOI för Hfq-dependent regulation of OmpA synthesis is mediated by an an-tisense RNA.

RNA-binding activity and regulatory functions of the emerging sRNA-binding protein ProQ

Holmqvist, Erik; Berggren, Sofia; Rizvanovic, Alisa

Ingår i Biochimica et Biophysica Acta. Gene Regulatory Mechanisms, 2020

• DOI för RNA-binding activity and regulatory functions of the emerging sRNA-binding protein ProQ

RNA-binding proteins in bacteria

Holmqvist, Erik; Vogel, Jörg

Ingår i Nature Reviews Microbiology, s. 601-615, 2018

• DOI för RNA-binding proteins in bacteria

Impact of bacterial sRNAs in stress responses

Holmqvist, Erik; Wagner, E. Gerhart H.

Ingår i Biochemical Society Transactions, s. 1203-1212, 2017

• DOI för Impact of bacterial sRNAs in stress responses
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Macromolecular Matchmaking: Mechanisms and Biology of Bacterial Small RNAs

Holmqvist, Erik

2012

• Ladda ner fulltext (pdf) av Macromolecular Matchmaking: Mechanisms and Biology of Bacterial Small RNAs

CLIP-Seq in Bacteria: Global Recognition Patterns of Bacterial RNA-Binding Proteins

Andresen, Liis; Holmqvist, Erik

Ingår i High-Density Sequencing Applications in Microbial Molecular Genetics, s. 127-145, ELSEVIER ACADEMIC PRESS INC, 2018

• DOI för CLIP-Seq in Bacteria: Global Recognition Patterns of Bacterial RNA-Binding Proteins

The sRNA MicF targets its own regulator Lrp and promotes a positive feedback loop

Holmqvist, Erik; Unoson, Cecilia; Reimegård, Johan; Wagner, Gerhart E. H.