Erik Marklund

Publikationer

Senaste publikationer

• Collision induced unfolding and molecular dynamics simulations of norovirus capsid dimers reveal strain-specific stability profiles (2024)
• Emergence of fractal geometries in the evolution of a metabolic enzyme (2024)
• Enhanced EMC-Advantages of partially known orientations in x-ray single particle imaging (2024)
• Rehydration Post-orientation (2023)
• Engineered Aldolases Catalyzing Stereoselective Aldol Reactions Between Aryl-Substituted Ketones and Aldehydes (2023)

Alla publikationer

Artiklar

• Collision induced unfolding and molecular dynamics simulations of norovirus capsid dimers reveal strain-specific stability profiles (2024)
• Emergence of fractal geometries in the evolution of a metabolic enzyme (2024)
• Enhanced EMC-Advantages of partially known orientations in x-ray single particle imaging (2024)
• Rehydration Post-orientation (2023)
• Engineered Aldolases Catalyzing Stereoselective Aldol Reactions Between Aryl-Substituted Ketones and Aldehydes (2023)
• Coherent diffractive imaging of proteins and viral capsids (2023)
• Liquid-Liquid Phase Separation Primes Spider Silk Proteins for Fiber Formation via a Conditional Sticker Domain (2023)
• Mass Spectrometry of RNA-Binding Proteins during Liquid-Liquid Phase Separation Reveals Distinct Assembly Mechanisms and Droplet Architectures (2023)
• Complementing machine learning‐based structure predictions with native mass spectrometry (2022)
• Stability and conformational memory of electrosprayed and rehydrated bacteriophage MS2 virus coat proteins (2022)
• Mass Spectrometry and Machine Learning Reveal Determinants of Client Recognition by Antiamyloid Chaperones (2022)
• Structural Basis for Dityrosine-Mediated Inhibition of α-Synuclein Fibrillization (2022)
• Electrospray ionization of native membrane proteins proceeds via a charge equilibration step (2022)
• Charge Engineering Reveals the Roles of Ionizable Side Chains in Electrospray Ionization Mass Spectrometry (2021)
• Glycan-Induced Protein Dynamics in Human Norovirus P Dimers Depend on Virus Strain and Deamidation Status (2021)
• Ion mobility-mass spectrometry shows stepwise protein unfolding under alkaline conditions (2021)
• Protein orientation in time-dependent electric fields (2021)
• Reproducibility in the unfolding process of protein induced by an external electric field (2021)
• Software Requirements for the Analysis and Interpretation of Native Ion Mobility Mass Spectrometry Data (2020)
• Computational Strategies and Challenges for Using Native Ion Mobility Mass Spectrometry in Biophysics and Structural Biology (2020)
• A hydrophobic ratchet entrenches molecular complexes (2020)
• Predicting the Shapes of Protein Complexes through Collision Cross Section Measurements and Database Searches (2020)
• MkVsites (2020)
• Structural Heterogeneity in Single Particle Imaging Using X-ray Lasers (2020)
• A strategy for the identification of protein architectures directly from ion mobility mass spectrometry data reveals stabilizing subunit interactions in light harvesting complexes (2019)
• Gas-Phase Collisions with Trimethylamine-N-Oxide Enable Activation-Controlled Protein Ion Charge Reduction (2019)
• Weighing-up protein dynamics (2019)
• Lipids Shape the Electron Acceptor-Binding Site of the Peripheral Membrane Protein Dihydroorotate Dehydrogenase (2018)
• Fundamentals of ion mobility spectrometry (2018)
• Mass Spectrometry Reveals the Direct Action of a Chemical Chaperone (2018)
• Structural principles that enable oligomeric small heat-shock protein paralogs to evolve distinct functions. (2018)
• Bringing Molecular Dynamics and Ion-Mobility Spectrometry Closer Together (2018)
• Structural and functional aspects of the interaction partners of the small heat-shock protein in Synechocystis (2018)
• Quantitative mass imaging of single biological macromolecules (2018)
• Mass spectrometry captures structural intermediates in protein fiber self-assembly (2017)
• Effects of Detergent Micelles on Lipid Binding to Proteins in Electrospray Ionization Mass Spectrometry (2017)
• Integrating mass spectrometry with MD simulations reveals the role of lipids in Na+/H+ antiporters (2017)
• Controlling Protein Orientation in Vacuum Using Electric Fields (2017)
• Molecular self-occlusion as a means for accelerating collision cross-section calculations (2015)
• Collision cross sections for structural proteomics. (2015)
• A hydrodynamic comparison of solution and gas phase proteins and their complexes. (2014)
• Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models (2013)
• High-throughput gene expression analysis at the level of single proteins using a microfluidic turbidostat and automated cell tracking (2013)
• The lac repressor displays facilitated diffusion in living cells (2012)
• Proteins, Lipids, and Water in the Gas Phase (2011)
• Radiation damage in biological material (2009)
• Structural stability of electrosprayed proteins (2009)
• Single particle X-ray diffractive imaging (2008)
• Formation of secondary electron cascades in single-crystalline plasma-deposited diamond upon exposure to femtosecond x-ray pulses (2008)
• Proteins structures under electrospray conditions (2007)
• Charge engineering reveals the roles of ionizable side chains in electrospray ionization mass spectrometry
• Molecular dynamics simulations reveal barrel opening during the unfolding of the outer membrane protein FhaC
• Nanocrystal imaging using intense and ultrashort X-ray pulses
• Collision induced unfolding coupled with gas-phase hydrogen/deuterium exchange give evidence for highly zwitterionic proteins in the gas phase
• Effcient Dynamic Proton Transfer in Classical Molecular Dynamics
• Structural basis for dityrosine-mediated inhibition of alpha-synuclein fibrillation
• Orientation before destruction. A multiscale molecular dynamics study

Böcker

• Gas-Phase Protein Structure Under the Computational Microscope (2011)

Kapitel

• CCS for Modelling 3D Structures (2021)