Lars Feuk
Professor vid Institutionen för immunologi, genetik och patologi; Forskningsprogram: Genomik och Neurobiologi; Forskargrupp Lars Feuk
- Telefon:
- 018-471 48 27
- Mobiltelefon:
- 070-167 94 25
- E-post:
- lars.feuk@igp.uu.se
- Besöksadress:
- BMC
Husargatan 3
751 22 Uppsala - Postadress:
- Box 815
751 08 Uppsala
Publikationer
Senaste publikationer
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Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
Ingår i Bioinformatics, 2026
- DOI för Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
- Ladda ner fulltext (pdf) av Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
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Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
Ingår i Neurology Genetics, 2025
- DOI för Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
- Ladda ner fulltext (pdf) av Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
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A national long-read sequencing study on chromosomal rearrangements uncovers hidden complexities
Ingår i Genome Research, s. 1774-1784, 2024
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Ingår i Scientific Reports, 2024
- DOI för Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation
- Ladda ner fulltext (pdf) av Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation
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Resolving complex duplication variants in autism spectrum disorder using long-read genome sequencing
Ingår i Genome Research, s. 1763-1773, 2024
- DOI för Resolving complex duplication variants in autism spectrum disorder using long-read genome sequencing
- Ladda ner fulltext (pdf) av Resolving complex duplication variants in autism spectrum disorder using long-read genome sequencing
Alla publikationer
Artiklar i tidskrift
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Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
Ingår i Bioinformatics, 2026
- DOI för Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
- Ladda ner fulltext (pdf) av Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis
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Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
Ingår i Neurology Genetics, 2025
- DOI för Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
- Ladda ner fulltext (pdf) av Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder
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A national long-read sequencing study on chromosomal rearrangements uncovers hidden complexities
Ingår i Genome Research, s. 1774-1784, 2024
-
Ingår i Scientific Reports, 2024
- DOI för Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation
- Ladda ner fulltext (pdf) av Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation
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Resolving complex duplication variants in autism spectrum disorder using long-read genome sequencing
Ingår i Genome Research, s. 1763-1773, 2024
- DOI för Resolving complex duplication variants in autism spectrum disorder using long-read genome sequencing
- Ladda ner fulltext (pdf) av Resolving complex duplication variants in autism spectrum disorder using long-read genome sequencing
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A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing
Ingår i Life Science Alliance, 2024
- DOI för A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing
- Ladda ner fulltext (pdf) av A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing
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Ingår i International Journal of Molecular Sciences, 2024
- DOI för From SARS-CoV-2 to Global Preparedness: A Graphical Interface for Standardised High-Throughput Bioinformatics Analysis in Pandemic Scenarios and Surveillance of Drug Resistance
- Ladda ner fulltext (pdf) av From SARS-CoV-2 to Global Preparedness: A Graphical Interface for Standardised High-Throughput Bioinformatics Analysis in Pandemic Scenarios and Surveillance of Drug Resistance
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Long-read whole-genome analysis of human single cells
Ingår i Nature Communications, 2023
- DOI för Long-read whole-genome analysis of human single cells
- Ladda ner fulltext (pdf) av Long-read whole-genome analysis of human single cells
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Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH
Ingår i BMC Research Notes, 2023
- DOI för Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH
- Ladda ner fulltext (pdf) av Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH
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Ingår i International Journal of Molecular Sciences, 2022
- DOI för Multi-Omic Investigations of a 17-19 Translocation Links MINK1 Disruption to Autism, Epilepsy and Osteoporosis
- Ladda ner fulltext (pdf) av Multi-Omic Investigations of a 17-19 Translocation Links MINK1 Disruption to Autism, Epilepsy and Osteoporosis
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Ingår i Nature Communications, 2022
- DOI för CRISPR-Cas9 induces large structural variants at on-target and off-target sites in vivo that segregate across generations
- Ladda ner fulltext (pdf) av CRISPR-Cas9 induces large structural variants at on-target and off-target sites in vivo that segregate across generations
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DLG4-related synaptopathy: a new rare brain disorder
Ingår i Genetics in Medicine, s. 888-899, 2021
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Ingår i Human Genetics, s. 775-790, 2021
- DOI för Hybrid sequencing resolves two germline ultra-complex chromosomal rearrangements consisting of 137 breakpoint junctions in a single carrier
- Ladda ner fulltext (pdf) av Hybrid sequencing resolves two germline ultra-complex chromosomal rearrangements consisting of 137 breakpoint junctions in a single carrier
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Ingår i Scientific Reports, 2021
- DOI för Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts
- Ladda ner fulltext (pdf) av Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts
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Ingår i Genes, 2021
- DOI för Transcriptome analysis of post-mortem brain tissue reveals up-regulation of the complement cascade in a subgroup of schizophrenia patients
- Ladda ner fulltext (pdf) av Transcriptome analysis of post-mortem brain tissue reveals up-regulation of the complement cascade in a subgroup of schizophrenia patients
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R.ROSETTA: an interpretable machine learning framework
Ingår i BMC Bioinformatics, 2021
- DOI för R.ROSETTA: an interpretable machine learning framework
- Ladda ner fulltext (pdf) av R.ROSETTA: an interpretable machine learning framework
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Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism Spectrum Disorder
Ingår i Frontiers in Genetics, 2021
- DOI för Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism Spectrum Disorder
- Ladda ner fulltext (pdf) av Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism Spectrum Disorder
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Ingår i RNA, s. 1654-1666, 2020
- DOI för Identification and rescue of a tRNA wobble inosine deficiency causing intellectual disability disorder
- Ladda ner fulltext (pdf) av Identification and rescue of a tRNA wobble inosine deficiency causing intellectual disability disorder
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Whole genome sequencing of familial isolated oesophagus atresia uncover shared structural variants
Ingår i BMC Medical Genomics, 2020
- DOI för Whole genome sequencing of familial isolated oesophagus atresia uncover shared structural variants
- Ladda ner fulltext (pdf) av Whole genome sequencing of familial isolated oesophagus atresia uncover shared structural variants
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Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity
Ingår i Genome Biology, 2020
- DOI för Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity
- Ladda ner fulltext (pdf) av Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity
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Ingår i Genes, 2020
- DOI för Evaluation of Single-Molecule Sequencing Technologies for Structural Variant Detection in Two Swedish Human Genomes
- Ladda ner fulltext (pdf) av Evaluation of Single-Molecule Sequencing Technologies for Structural Variant Detection in Two Swedish Human Genomes
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Exploring autoantibody signatures in brain tissue from patients with severe mental illness
Ingår i Translational Psychiatry, 2020
- DOI för Exploring autoantibody signatures in brain tissue from patients with severe mental illness
- Ladda ner fulltext (pdf) av Exploring autoantibody signatures in brain tissue from patients with severe mental illness
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Ingår i Scientific Reports, 2020
- DOI för Transcriptome analysis of fibroblasts from schizophrenia patients reveals differential expression of schizophrenia-related genes
- Ladda ner fulltext (pdf) av Transcriptome analysis of fibroblasts from schizophrenia patients reveals differential expression of schizophrenia-related genes
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Ingår i Clinical Genetics, s. 436-439, 2019
- DOI för Whole genome sequencing of consanguineous families reveals novel pathogenic variants in intellectual disability
- Ladda ner fulltext (pdf) av Whole genome sequencing of consanguineous families reveals novel pathogenic variants in intellectual disability
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Ingår i BMC Medical Genomics, 2019
- DOI för Linkage and exome analysis implicate multiple genes in non-syndromic intellectual disability in a large Swedish family
- Ladda ner fulltext (pdf) av Linkage and exome analysis implicate multiple genes in non-syndromic intellectual disability in a large Swedish family
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Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development
Ingår i Frontiers in Genetics, 2019
- DOI för Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development
- Ladda ner fulltext (pdf) av Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development
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Ingår i BMC Biotechnology, 2019
- DOI för Copy number determination of the gene for the human pancreatic polypeptide receptor NPY4R using read depth analysis and droplet digital PCR.
- Ladda ner fulltext (pdf) av Copy number determination of the gene for the human pancreatic polypeptide receptor NPY4R using read depth analysis and droplet digital PCR.
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Ingår i Journal of Psychiatric Research, s. 41-47, 2019
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Expression profiling and in situ screening of circular RNAs in human tissues
Ingår i Scientific Reports, 2018
- DOI för Expression profiling and in situ screening of circular RNAs in human tissues
- Ladda ner fulltext (pdf) av Expression profiling and in situ screening of circular RNAs in human tissues
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Ingår i Human Mutation, s. 1262-1272, 2018
- DOI för Detailed analysis of HTT repeat elements in human blood using targeted amplification-free long-read sequencing
- Ladda ner fulltext (pdf) av Detailed analysis of HTT repeat elements in human blood using targeted amplification-free long-read sequencing
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Ingår i Genes, 2018
- DOI för De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data
- Ladda ner fulltext (pdf) av De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data
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Ingår i PLOS ONE, 2018
- DOI för Copy number of pancreatic polypeptide receptor gene NPY4R correlates with body mass index and waist circumference
- Ladda ner fulltext (pdf) av Copy number of pancreatic polypeptide receptor gene NPY4R correlates with body mass index and waist circumference
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Exome sequencing reveals NAA15 and PUF60 as candidate genes associated with intellectual disability
Ingår i American Journal of Medical Genetics Part B, s. 10-20, 2018
- DOI för Exome sequencing reveals NAA15 and PUF60 as candidate genes associated with intellectual disability
- Ladda ner fulltext (pdf) av Exome sequencing reveals NAA15 and PUF60 as candidate genes associated with intellectual disability
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A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0)
Ingår i GigaScience, s. 1-6, 2017
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Reduced cell surface levels of GPI-linked markers in a new case with PIGG loss of function
Ingår i Human Mutation, s. 1394-1401, 2017
- DOI för Reduced cell surface levels of GPI-linked markers in a new case with PIGG loss of function
- Ladda ner fulltext (pdf) av Reduced cell surface levels of GPI-linked markers in a new case with PIGG loss of function
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Ingår i European Journal of Human Genetics, s. 1253-1260, 2017
- DOI för SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population
- Ladda ner fulltext (pdf) av SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population
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Mutations in HECW2 are associated with intellectual disability and epilepsy
Ingår i Journal of Medical Genetics, s. 697-704, 2016
- DOI för Mutations in HECW2 are associated with intellectual disability and epilepsy
- Ladda ner fulltext (pdf) av Mutations in HECW2 are associated with intellectual disability and epilepsy
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Ingår i Biology of Sex Differences, 2016
- DOI för Spatial sexual dimorphism of X and Y homolog gene expression in the human central nervous system during early male development
- Ladda ner fulltext (pdf) av Spatial sexual dimorphism of X and Y homolog gene expression in the human central nervous system during early male development
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Ingår i Twin Research and Human Genetics, s. 97-103, 2016
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A Role for the Chromatin-Remodeling Factor BAZ1A in Neurodevelopment
Ingår i Human Mutation, s. 964-975, 2016
- DOI för A Role for the Chromatin-Remodeling Factor BAZ1A in Neurodevelopment
- Ladda ner fulltext (pdf) av A Role for the Chromatin-Remodeling Factor BAZ1A in Neurodevelopment
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Ingår i Cellular Reprogramming, s. 327-337, 2015
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Deleterious mutation in FDX1L gene is associated with a novel mitochondrial muscle myopathy
Ingår i European Journal of Human Genetics, s. 902-906, 2014
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Abolished InsP3R2 function inhibits sweat secretion in both humans and mice
Ingår i Journal of Clinical Investigation, s. 4773-4780, 2014
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The Database of Genomic Variants: a curated collection of structural variation in the human genome
Ingår i Nucleic Acids Research, 2014
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Ingår i BMC Biotechnology, s. 99, 2013
- DOI för Efficient cellular fractionation improves RNA sequencing analysis of mature and nascent transcripts from human tissues
- Ladda ner fulltext (pdf) av Efficient cellular fractionation improves RNA sequencing analysis of mature and nascent transcripts from human tissues
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Genome-wide Association Study of Susceptibility Loci for Cervical Cancer
Ingår i Journal of the National Cancer Institute, s. 624-633, 2013
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Exome RNA sequencing reveals rare and novel alternative transcripts
Ingår i Nucleic Acids Research, 2013
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Mechanisms of Formation of Structural Variation in a Fully Sequenced Human Genome
Ingår i Human Mutation, s. 345-354, 2013
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RNA-binding protein QKI regulates Glial fibrillary acidic protein expression in human astrocytes
Ingår i Human Molecular Genetics, s. 1373-1382, 2013
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Ingår i Human Mutation, s. 572-577, 2013
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Ingår i BMC Medical Genetics, s. 123, 2012
- DOI för Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder
- Ladda ner fulltext (pdf) av Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder
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Ingår i American Journal of Human Genetics, s. 809-820, 2012
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Intractable epilepsy of infancy due to homozygous mutation in the EFHC1 gene
Ingår i Epilepsia, s. 1436-1440, 2012
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Diagnostic Interpretation of Array Data Using Public Databases and Internet Sources
Ingår i Human Mutation, s. 930-940, 2012
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Ingår i American Journal of Human Genetics, s. 518-523, 2012
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Ingår i Nature Biotechnology, s. 512-521, 2011
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Characterization of Copy Number-Stable Regions in the Human Genome
Ingår i Human Mutation, s. 947-955, 2011
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Ingår i Nature Structural & Molecular Biology, s. 1435-1440, 2011
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Public data archives for genomic structural variation
Ingår i Nature Genetics, s. 813-814, 2010
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Inversion variants in the human genome: role in disease and genome architecture
Ingår i Genome Medicine, 2010
- DOI för Inversion variants in the human genome: role in disease and genome architecture
- Ladda ner fulltext (pdf) av Inversion variants in the human genome: role in disease and genome architecture
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Ingår i Nature, s. 713-720, 2010
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Ingår i Clinical Genetics, s. 478-483, 2010
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Ingår i American Journal of Human Genetics, s. 749-764, 2010
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Origins and functional impact of copy number variation in the human genome
Ingår i Nature, s. 704-712, 2010
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Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing
Ingår i Genome Biology, 2010
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Global and unbiased detection of splice junctions from RNA-seq data
Ingår i Genome Biology, 2010
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Towards a comprehensive structural variation map of an individual human genome
Ingår i Genome biology, 2010
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Ingår i Nature, s. 168-170, 2009
Kapitel i böcker, delar av antologi
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Ingår i Brain Transcriptome, s. 95-125, Elsevier, 2014