Kasson lab

The Kasson group focuses on how enveloped viruses infect cells. Such viruses first bind to receptors on the cell surface and then release their genome into the cell via a process of membrane fusion. We study the physical determinants that govern when and where these infectious processes can happen. The group uses single-virus optical microscopy, molecular dynamics simulations, and other biophysical techniques to untangle the virus-membrane interactions that control infection.
Popular science presentation
We have all experienced viral diseases, and the single underlying constant of viral risk assessment is that there will be more. The challenge is knowing where, when, and what we as a society can do about it. Both risk assessment for viral pandemics and research into "everyday" viruses involve questions from the molecular to the global scale. We focus on understanding the physical determinants of infection - what physical mechanisms govern where and how viruses can get into cells to make more copies and spread. What controls whether a virus can infect humans, and within the human body which cells and tissues are susceptible to infection? These questions form the basis for combatting existing viral diseases as well as understanding the physical challenges to emerging or novel diseases.
To understand these questions, we follow individual viruses in real time using microscopy as they interact with cells or with membrane mimics. In particular, we design systems where we can chemically control aspects of the entry process - this both lets us understand mechanism and avoids the risks associated with genetic gain-of-function research. We combine these approaches with computational modeling of the molecules in the viral and host membranes as they interact to gain a detailed view of the entry process. We also seek to use the knowledge and the assays we develop to aid disease surveillance and clinical decision-making when possible.
Research projects
- Why is influenza virus better at entering via endosomes?
- Do insect-transmitted viruses interact with human and insect host membranes differently?
- New optical probes for viral entry and RNA structural kinetics
Group members
Publications
Influenza viral infection at the plasma membrane is restricted by lipid composition
Part of Journal of Virology, p. 1-18, 2025
- DOI for Influenza viral infection at the plasma membrane is restricted by lipid composition
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Part of PloS Computational Biology, 2025
- DOI for Structural prediction of chimeric immunogen candidates to elicit targeted antibodies against betacoronaviruses
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Part of Faraday discussions, p. 341-353, 2024
- DOI for Friends and relatives: insight into conformational regulation from orthologues and evolutionary lineages using KIF and KIN
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Part of Protein Science, 2024
- DOI for Key interaction networks: Identifying evolutionarily conserved non-covalent interaction networks across protein families
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Single-Virus Microscopy of Biochemical Events in Viral Entry
Part of JACS Au, p. 399-407, 2024
- DOI for Single-Virus Microscopy of Biochemical Events in Viral Entry
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Part of Current opinion in structural biology, 2024
- DOI for Using residue interaction networks to understand protein function and evolution and to engineer new proteins
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Part of Journal of Chemical Physics, 2023
- DOI for KIF-Key Interactions Finder: A program to identify the key molecular interactions that regulate protein conformational changes
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Mechanistic dissection of antibody inhibition of influenza entry yields unexpected heterogeneity
Part of Biophysical Journal, p. 1996-2006, 2023
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Part of Journal of Virology, 2023
The ACE2 receptor accelerates but is not biochemically required for SARS-CoV-2 membrane fusion
Part of Chemical Science, p. 6997-7004, 2023
- DOI for The ACE2 receptor accelerates but is not biochemically required for SARS-CoV-2 membrane fusion
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gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support
Part of PloS Computational Biology, 2022
- DOI for gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support
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Part of Journal of Physical Chemistry B, p. 10445-10451, 2022
- DOI for Influenza Virus Membrane Fusion Is Promoted by the Endosome-Resident Phospholipid Bis(monoacylglycero)phosphate
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Measuring single-virus fusion kinetics using an assay for nucleic acid exposure
Part of Biophysical Journal, p. 4467-4475, 2022
- DOI for Measuring single-virus fusion kinetics using an assay for nucleic acid exposure
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Inference of Joint Conformational Distributions from Separately Acquired Experimental Measurements
Part of The Journal of Physical Chemistry Letters, p. 1606-1611, 2021
Precise Triggering and Chemical Control of Single-Virus Fusion within Endosomes
Part of Journal of Virology, 2021
The N-terminal Helix-Turn-Helix Motif of Transcription Factors MarA and Rob Drives DNA Recognition
Part of Journal of Physical Chemistry B, p. 6791-6806, 2021
- DOI for The N-terminal Helix-Turn-Helix Motif of Transcription Factors MarA and Rob Drives DNA Recognition
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Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus
Part of Structure, p. 888-+, 2020
Part of The Journal of Physical Chemistry Letters, p. 7190-7196, 2020
Influenza hemagglutinin drives viral entry via two sequential intramembrane mechanisms
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 7200-7207, 2020
Part of Clinical Infectious Diseases, p. 3174-3181, 2020
- DOI for Managing Coronavirus Disease 2019 Spread With Voluntary Public Health Measures: Sweden as a Case Study for Pandemic Control
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Part of ACS - Infectious Diseases, p. 2096-2104, 2019
Detecting and Controlling Dye Effects in Single-Virus Fusion Experiments
Part of Biophysical Journal, p. 445-452, 2019
Hybrid Refinement of Heterogeneous Conformational Ensembles Using Spectroscopic Data
Part of The Journal of Physical Chemistry Letters, p. 3410-3414, 2019
Part of Journal of Physical Chemistry B, p. 3576-3590, 2019
- DOI for Long Time-Scale Atomistic Simulations of the Structure and Dynamics of Transcription Factor-DNA Recognition
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Adaptive ensemble simulations of biomolecules
Part of Current opinion in structural biology, p. 87-94, 2018
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Cholesterol enhances influenza binding avidity by controlling nanoscale receptor clustering
Part of Chemical Science, p. 2340-2347, 2018
- DOI for Cholesterol enhances influenza binding avidity by controlling nanoscale receptor clustering
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Conformational Intermediate That Controls KPC-2 Catalysis and Beta-Lactam Drug Resistance
Part of ACS Catalysis, p. 2741-2747, 2018
gmxapi: a high-level interface for advanced control and extension of molecular dynamics simulations.
Part of Bioinformatics, p. 3945-3947, 2018
- DOI for gmxapi: a high-level interface for advanced control and extension of molecular dynamics simulations.
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Part of Journal of Molecular Biology, p. 594-601, 2018
pH Dependence of Zika Membrane Fusion Kinetics Reveals an Off-Pathway State
Part of ACS CENTRAL SCIENCE, p. 1503-1510, 2018
- DOI for pH Dependence of Zika Membrane Fusion Kinetics Reveals an Off-Pathway State
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Refinement of highly flexible protein structures using simulation-guided spectroscopy
Part of Angewandte Chemie International Edition, p. 17110-17114, 2018
- DOI for Refinement of highly flexible protein structures using simulation-guided spectroscopy
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Part of Biophysical Journal, 2018
Predicting allosteric mutants that increase activity of a major antibiotic resistance enzyme
Part of Chemical Science, p. 6484-6492, 2017
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Understanding allosteric modulation of beta lactamase function and bacterial drug resistance
Part of Abstracts of Papers of the American Chemical Society, 2017