Marie Allen – Improved methods for forensic and historical DNA analysis
Our research aims to develop highly sensitive and discriminating assays for forensic DNA analysis of challenging samples.
Evidence samples found at a crime scene have often been subjected to harsh environments, and the, often minute, amounts of DNA present may be degraded and damaged. Our research involves developing typing assays to analyse mitochondrial DNA (mtDNA) and nuclear DNA (nDNA) markers. Using mtDNA markers allows a highly sensitive analysis due to the high number of mtDNA copies per cell. In addition, nDNA markers, amplified in short PCR fragments, will yield a higher discrimination power than the mtDNA analysis.
Analyses of challenging DNA samples
Several new assays have been developed in our research group and used successfully to analyse challenging evidence material in forensic cases. In earlier projects, we have employed traditional molecular biology methods, but next-generation sequencing (NGS) technologies are optimal for analysing DNA from degraded, limited, and damaged samples. The new methods can also be used for genetic analysis of older and historical material to identify individuals or link different materials together.
Evaluation of relationship or origin
As an ultimate test, our new methods have been used to investigate the putative remains of St. Birgitta and her daughter Katarina, Nicolaus Copernicus, Carin Göring, and from the Swedish Warship Vasa, to test for success in analysing challenging samples.
We have also analysed even older remains in a large collaborative project where we investigated samples from Viking-age graves in Scandinavia and boat graves found on the island of Saaremaa in Estonia for ancestry, appearance and familial relationships.
Our sensitive methods have also been used to investigate the origin of cultured cells in cancer research, as well as in new and cold cases in police investigations.

Gertrud and Gustav – two interpretations of the same person from the Vasa ship (Photo: Marie Allen)
Gruppmedlemmar
Publications
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Chronological age and crime: A review of how Swedish Courts evaluate age evidence
Part of Science & justice, 2026
- DOI for Chronological age and crime: A review of how Swedish Courts evaluate age evidence
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DNA Recovery Using Different Extraction Kits and Cotton Swabs in Forensic DNA Analysis
Part of Genes, 2026
- DOI for DNA Recovery Using Different Extraction Kits and Cotton Swabs in Forensic DNA Analysis
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Evaluation of DNA recovery from improvised explosive device components after detonations
Part of Forensic Science International, 2026
- DOI for Evaluation of DNA recovery from improvised explosive device components after detonations
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Part of Nature Genetics, p. 540-549, 2026
- DOI for Genome-wide association analyses highlight the role of the intestinal molecular environment in human gut microbiota variation
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Part of Genes, 2024
- DOI for Evaluation of Storage Conditions and the Effect on DNA from Forensic Evidence Objects Retrieved from Lake Water
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Complete Mitochondrial DNA Genome Variation in the Swedish Population
Part of Genes, p. 1989-1989, 2023
- DOI for Complete Mitochondrial DNA Genome Variation in the Swedish Population
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Part of Forensic Science International, 2023
- DOI for Forensic prediction of sex, age, height, body mass index, hip-to-waist ratio, smoking status and lipid lowering drugs using epigenetic markers and plasma proteins
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The DNA-Buster: The evaluation of an alternative DNA recovery approach
Part of Forensic Science International, 2023
- DOI for The DNA-Buster: The evaluation of an alternative DNA recovery approach
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Evaluation of Different Cleaning Strategies for Removal of Contaminating DNA Molecules
Part of Genes, 2022
- DOI for Evaluation of Different Cleaning Strategies for Removal of Contaminating DNA Molecules
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Part of International Journal of Molecular Sciences, 2022
- DOI for The Value of Whole-Genome Sequencing for Mitochondrial DNA Population Studies: Strategies and Criteria for Extracting High-Quality Mitogenome Haplotypes
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Part of Forensic Science International, 2020
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Population genomics of the Viking world
Part of Nature, p. 390-+, 2020
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Mitochondrial DNA analysis of a Viking age mass grave in Sweden
Part of Forensic Science International, p. 268-274, 2019
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Evaluation of the precision ID whole MtDNA genome panel for forensic analyses
Part of Forensic Science International, p. 21-25, 2018
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Results of a collaborative study on DNA identification of aged bone samples
Part of Croatian Medical Journal, p. 203-213, 2017
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Analysis of Mitochondrial DNA from a Burned, Ninhydrin-Treated Paper Towel
Part of Journal of Forensic Sciences, p. 828-832, 2016
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Comparison of DNA polymerases for improved forensic analysis of challenging samples
Part of Forensic Science International, p. 55-59, 2016
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Multiplex pyrosequencing of InDel markers for forensic DNA analysis
Part of Electrophoresis, p. 3039-3045, 2016
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Origin of the U87MG glioma cell line: Good news and bad news
Part of Science Translational Medicine, 2016
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Part of Legal Medicine, p. 539-546, 2015
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Forensic Analysis of Mitochondrial and Autosomal Markers Using Pyrosequencing®.
Part of Methods in Molecular Biology, p. 379-396, 2015
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Part of Acta Paediatrica, p. 910-915, 2015
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Collecting and Preserving Biological Samples from Challenging Environments for DNA Analysis
Part of Biopreservation and Biobanking, p. 17-22, 2014
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Evaluation of the Impact of Different Visualization Techniques on DNA in Fingerprints
Part of Journal of Forensic Identification, p. 189-204, 2013
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Mitochondrial DNA analysis of Swedish population samples
Part of International journal of legal medicine, p. 1097-1099, 2013
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Part of Journal of Interventional Cardiac Electrophysiology, p. 11-18, 2012
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An Analysis of the Alleged Skeletal Remains of Carin Göring
Part of PLOS ONE, 2012
- DOI for An Analysis of the Alleged Skeletal Remains of Carin Göring
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Part of PLOS ONE, 2012
- DOI for Automated Genotyping of Biobank Samples by Multiplex Amplification of Insertion/Deletion Polymorphisms
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Part of Läkartidningen, p. 39-39, 2012
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Part of Open Forensic Science Journal, p. 13-22, 2012
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Analysis of the putative remains of a European patron saint--St. Birgitta
Part of PLoS ONE, 2010
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Forensic analysis of autosomal STR markers using Pyrosequencing
Part of Forensic Science International, p. 122-129, 2010
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Part of BioTechniques, p. 671-678, 2009
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Genetic identification of putative remains of the famous astronomer Nicolaus Copernicus
Part of Proceedings of the National Academy of Sciences of the United States of America, p. 12279-12282, 2009
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Y chromosomal STR analysis using Pyrosequencing technology
Part of Forensic Science International, p. 119-124, 2009
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Part of Forensic Science International, p. 1-8, 2008
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Part of BMC Cancer, p. 214, 2008
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SNP typing using Molecular Inversion Probes
Part of Forensic Science International, p. 473-475, 2008
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Part of Forensic Science International, p. 35-43, 2007
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Part of Journal of Forensic Sciences, p. 937-938, 2006
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Nuclear and mitochondrial DNA quantification of various forensic materials
Part of Forensic Science International, p. 56-64, 2006
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Quantification of mtDNA mixtures in forensic evidence material using pyrosequencing
Part of International journal of legal medicine, p. 383-390, 2006
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Sensitive forensic analysis using the Pyrosequencing technology
Part of Excerpta Medica, p. 625-627, 2006
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STR sequence variants revealed by Pyrosequencing technology
Part of Excerpta Medica, p. 669-671, 2006
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A DNA microarray system for forensic SNP analysis
Part of Forensic Science International, p. 111-121, 2005
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Forensic analysis of the mitochondrial coding region and association to disease.
Part of International journal of legal medicine, p. 314-315, 2005
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Forensic casework analysis using the HVI/HVII mtDNA linear array assay.
Part of Journal of Forensic Sciences, p. 548-554, 2005
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Mitochondrial D-loop and coding sequence analysis using pyrosequencing
Part of Methods in Molecular Biology, p. 179-196, 2005
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Universal tag arrays in forensic SNP analysis.
Part of Methods in Molecular Biology, p. 141-154, 2005
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Analysis of the mitochondrial genome in sudden infant death syndrome.
Part of Acta Paediatr, p. 386, 2003
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Rapid quantification and sex determination of forensic evidence materials
Part of Journal of Forensic Sciences, p. 1280-1287, 2003
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Mitochondrial sequence analysis for forensic identification using pyrosequencing technology.
Part of Biotechniques, p. 124, 2002
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Mitochondrial sequence analysis for forensic identification using Pyrosequencing technology
Part of BioTechniques, p. 124-6, 128, 130-3, 2002
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Real-Time DNA Quantification of Nuclear and Mitochondrial DNA in Forensic Analysis
Part of BioTechniques, p. 402-411, 2002
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Part of Journal of Forensic Sciences, p. 1210-1231, 2000
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Part of Journal of Clinical Endocrinology and Metabolism, p. 1722-1728, 1999
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Part of Hereditas, p. 161-167, 1998
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Part of Journal of Forensic Sciences, p. 453-464, 1998
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Part of Tissue Antigens, p. 32-37, 1996
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Allele-specific HLA-DRB1 amplification of forensic evidence samples with mixed genotypes
Part of BioTechniques, p. 454-463, 1995
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Analysis of HLA-Class II DQA1, DQB1, DRB1 and DPB1 in Italian Multiple Sclerosis Patients
Part of European journal of immunogenetics, p. 171-178, 1995
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A comprehensive polymerase chain reaction-oligonucleotide typing system for the HLA class I A locus
Part of Human Immunology, p. 25-32, 1994
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Part of Human Immunology, p. 41-8, 1994
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PCR-based DNA typing of saliva on stamps and envelopes
Part of BioTechniques, p. 546-552, 1994
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Frequency of four cystic fibrosis mutations in a Swedish population
Part of Acta Paediatrica, p. 609, 1993
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Genetic typing of HLA class II genes in Swedish populations: application to forensic analysis
Part of Journal of Forensic Sciences, p. 554-70, 1993
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Sequencing of in vitro amplified DNA
Part of Methods in Enzymology, p. 3-16, 1993
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Part of PCR methods and applications, p. 91-8, 1991
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Screening for the major cystic fibrosis mutation in non-Caucasian populations
Part of American Journal of Human Genetics, p. 903-4, 1991