Publications

Genomic variation in montane bumblebees in Scandinavia: High levels of intraspecific diversity despite population vulnerability

Liu, Yuanzhen; Olsson, Anna; Larva, Tuuli; Cantwell-Jones, Aoife et al.

Part of Molecular Ecology, 2024

• DOI for Genomic variation in montane bumblebees in Scandinavia: High levels of intraspecific diversity despite population vulnerability
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Population genetics for insect conservation and control

Beaurepaire, Alexis L.; Webster, Matthew; Neumann, Peter

Part of Conservation Science and Practice (CSP), 2024

• DOI for Population genetics for insect conservation and control
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Population Genomics for Insect Conservation

Webster, Matthew Thomas; Beaurepaire, Alexis; Neumann, Peter; Stolle, Eckart

Part of Annual Review of Animal Biosciences, p. 115-140, 2023

• DOI for Population Genomics for Insect Conservation
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The Genomic Basis of Adaptation to High Elevations in Africanized Honey Bees

Everitt, Turid; Wallberg, Andreas; Christmas, Matthew; Olsson, Anna et al.

Part of Genome Biology and Evolution, 2023

• DOI for The Genomic Basis of Adaptation to High Elevations in Africanized Honey Bees
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A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component

Christmas, Matthew; Jones, Julia; Olsson, Anna; Wallerman, Ola et al.

Part of Molecular Ecology, p. 1111-1127, 2022

• DOI for A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component
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Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees

Dyrhage, Karl; Garcia-Montaner, Andrea; Tamarit, Daniel; Seeger, Christian et al.

Part of Genome Biology and Evolution, 2022

• DOI for Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees
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Massive genome inversion drives coexistence of divergent morphs in common quails

Sanchez-Donoso, Ines; Ravagni, Sara; Domingo Rodriguez-Teijeiro, J.; Christmas, Matthew et al.

Part of Current Biology, p. 462-+, 2022

• DOI for Massive genome inversion drives coexistence of divergent morphs in common quails

Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics

Christmas, Matthew; Jones, Julia C.; Olsson, Anna; Wallerman, Ola et al.

Part of Molecular biology and evolution, p. 3126-3143, 2021

• DOI for Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics
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Phylogenomics and evolutionary history of Oreobates (Anura: Craugastoridae) Neotropical frogs along elevational gradients

Montero-Mendieta, Santiago; De la Riva, Ignacio; Irisarri, Iker; Leonard, Jennifer A. et al.

Part of Molecular Phylogenetics and Evolution, 2021

• DOI for Phylogenomics and evolutionary history of Oreobates (Anura: Craugastoridae) Neotropical frogs along elevational gradients

Female-biased gene flow between two species of Darwin’s finches

Lamichhaney, Sangeet; Han, Fan; Webster, Matthew Thomas; Grant, B. Rosemary et al.

Part of Nature Ecology & Evolution, p. 979-986, 2020

• DOI for Female-biased gene flow between two species of Darwin’s finches

Population Genomics: How Do Cape Honey Bees Do Without Sex?

Webster, Matthew Thomas

Part of Current Biology, 2020

• DOI for Population Genomics: How Do Cape Honey Bees Do Without Sex?

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, Andreas; Bunikis, Ignas; Vinnere, Olga; Mosbech, Mai-Britt et al.

Part of BMC Genomics, 2019

• DOI for A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds
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Apis mellifera

Webster, Matthew Thomas

Part of Trends in Genetics, p. 880-881, 2019

• DOI for Apis mellifera

Chromosomal inversions associated with environmental adaptation in honeybees

Christmas, Matthew J; Wallberg, Andreas; Bunikis, Ignas; Olsson, Anna et al.

Part of Molecular Ecology, p. 1358-1374, 2019

• DOI for Chromosomal inversions associated with environmental adaptation in honeybees

Extreme Differences in Recombination Rate between the Genomes of a Solitary and a Social Bee

Jones, Julia C.; Wallberg, Andreas; Christmas, Matthew; Kapheim, Karen M et al.

Part of Molecular biology and evolution, p. 2277-2291, 2019

• DOI for Extreme Differences in Recombination Rate between the Genomes of a Solitary and a Social Bee

Social Parasitism in the Honeybee (Apis mellifera) Is Not Controlled by a Single SNP

Christmas, Matthew; Smith, Nicholas M. A.; Oldroyd, Benjamin P.; Webster, Matthew Thomas

Part of Molecular biology and evolution, p. 1764-1767, 2019

• DOI for Social Parasitism in the Honeybee (Apis mellifera) Is Not Controlled by a Single SNP

Substantial Heritable Variation in Recombination Rate on Multiple Scales in Honeybees and Bumblebees

Kawakami, Takeshi; Wallberg, Andreas; Olsson, Anna; Wintermantel, Dimitry et al.

Part of Genetics, p. 1101-1119, 2019

• DOI for Substantial Heritable Variation in Recombination Rate on Multiple Scales in Honeybees and Bumblebees

The genomic basis of adaptation to high-altitude habitats in the eastern honey bee (Apis cerana)

Montero-Mendieta, Santiago; Tan, Ken; Christmas, Matthew; Olsson, Anna et al.

Part of Molecular Ecology, p. 746-760, 2019

• DOI for The genomic basis of adaptation to high-altitude habitats in the eastern honey bee (Apis cerana)

Developing reduced SNP assays from whole-genome sequence data to estimate introgression in an organism with complex genetic patterns, the Iberian honeybee (Apis mellifera iberiensis)

Henriques, Dora; Parejo, Melanie; Vignal, Alain; Wragg, David et al.

Part of Evolutionary Applications, p. 1270-1282, 2018

• DOI for Developing reduced SNP assays from whole-genome sequence data to estimate introgression in an organism with complex genetic patterns, the Iberian honeybee (Apis mellifera iberiensis)
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Elevated proportions of deleterious genetic variation in domestic animals and plants

Makino, Takashi; Rubin, Carl-Johan; Carneiro, Miguel; Axelsson, Erik et al.

Part of Genome Biology and Evolution, p. 276-290, 2018

• DOI for Elevated proportions of deleterious genetic variation in domestic animals and plants
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Rapid hybrid speciation in Darwin's finches

Lamichhaney, Sangeet; Han, Fan; Webster, Matthew Thomas; Andersson, Leif et al.

Part of Science, p. 224-228, 2018

• DOI for Rapid hybrid speciation in Darwin's finches

Whole genome SNP-associated signatures of local adaptation in honeybees of the Iberian Peninsula

Henriques, Dora; Wallberg, Andreas; Chavez-Galarza, Julio; Johnston, J. Spencer et al.

Part of Scientific Reports, 2018

• DOI for Whole genome SNP-associated signatures of local adaptation in honeybees of the Iberian Peninsula
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A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog

Montero-Mendieta, Santiago; Grabherr, Manfred; Lantz, Henrik; De la Riva, Ignacio et al.

Part of PeerJ, 2017

• DOI for A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog
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Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin's finches

Han, Fan; Lamichhaney, Sangeet; Grant, B Rosemary; Grant, Peter R et al.

Part of Genome Research, p. 1004-1015, 2017

• DOI for Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin's finches
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Genomewide analysis of admixture and adaptation in the Africanized honeybee

Nelson, Ronald M.; Wallberg, Andreas; Paulino Simoes, Zila Luz; Lawson, Daniel J. et al.

Part of Molecular Ecology, p. 3603-3617, 2017

• DOI for Genomewide analysis of admixture and adaptation in the Africanized honeybee

Two extended haplotype blocks are associated with adaptation to high altitude habitats in East African honey bees

Wallberg, Andreas; Schoening, Caspar; Webster, Matthew Thomas; Hasselmann, Martin

Part of PLOS Genetics, 2017

• DOI for Two extended haplotype blocks are associated with adaptation to high altitude habitats in East African honey bees
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A beak size locus in Darwin’s finches facilitated character displacement during a drought

Lamichhaney, Sangeet; Han, Fan; Berglund, Jonas; Wang, Chao et al.

Part of Science, p. 470-474, 2016

• DOI for A beak size locus in Darwin’s finches facilitated character displacement during a drought

Adaptive radiation of Darwin's finches revisited using whole genome sequencing

Almén, Markus Sällman; Lamichhaney, Sangeet; Berglund, Jonas; Grant, B. Rosemary et al.

Part of Bioessays, p. 14-20, 2016

• DOI for Adaptive radiation of Darwin's finches revisited using whole genome sequencing

Identification of Multiple Loci Associated with Social Parasitism in Honeybees

Wallberg, Andreas; Pirk, Christian W.; Allsopp, Mike H.; Webster, Matthew T.

Part of PLOS Genetics, 2016

• DOI for Identification of Multiple Loci Associated with Social Parasitism in Honeybees
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Evolution of Darwin's finches and their beaks revealed by genome sequencing

Lamichhaney, Sangeet; Berglund, Jonas; Almen, Markus Sällman; Maqbool, Khurram et al.

Part of Nature, 2015

• DOI for Evolution of Darwin's finches and their beaks revealed by genome sequencing

Extreme Recombination Frequencies Shape Genome Variation and Evolution in the Honeybee, Apis mellifera

Wallberg, Andreas; Glemin, Sylvain; Webster, Matthew T.

Part of PLOS Genetics, 2015

• DOI for Extreme Recombination Frequencies Shape Genome Variation and Evolution in the Honeybee, Apis mellifera
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Germ line Methylation Patterns Determine the Distribution of Recombination Events in the Dog Genome

Berglund, Jonas; Quilez, Javier; Arndt, Peter F.; Webster, Matthew T.

Part of Genome Biology and Evolution, p. 522-530, 2015

• DOI for Germ line Methylation Patterns Determine the Distribution of Recombination Events in the Dog Genome

Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds

Webster, Matthew T.; Kamgari, Nona; Perloski, Michele; Höppner, Marc P. et al.

Part of BMC Genomics, 2015

• DOI for Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds
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A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera

Wallberg, Andreas; Han, Fan; Wellhagen, Gustaf; Dahle, Bjørn et al.

Part of Nature Genetics, p. 1081-1088, 2014

• DOI for A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera

Analysis of structural diversity in wolf-like canids reveals post-domestication variants

Ramirez, Oscar; Olalde, Inigo; Berglund, Jonas; Lorente-Galdos, Belen et al.

Part of BMC Genomics, p. 465, 2014

• DOI for Analysis of structural diversity in wolf-like canids reveals post-domestication variants
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Genome-wide copy number variant discovery in dogs using the CanineHD genotyping array

Molin, Anna-Maja; Berglund, Jonas; Webster, Matthew T.; Lindblad-Toh, Kerstin

Part of BMC Genomics, p. 210, 2014

• DOI for Genome-wide copy number variant discovery in dogs using the CanineHD genotyping array
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Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence

Rands, Chris M.; Darling, Aaron; Fujita, Matthew; Kong, Lesheng et al.

Part of BMC Genomics, p. 95, 2013

• DOI for Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence
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The ESR1 gene is associated with risk for canine mammary tumours

Borge, Kaja Sverdrup; Melin, Malin; Rivera, Patricio; Thoresen, Stein Istre et al.

Part of BMC Veterinary Research, p. 69, 2013

• DOI for The ESR1 gene is associated with risk for canine mammary tumours
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The genomic signature of dog domestication reveals adaptation to a starch-rich diet

Axelsson, Erik; Ratnakumar, Abhirami; Arendt, Maja Louise; Maqbool, Khurram et al.

Part of Nature, p. 360-364, 2013

• DOI for The genomic signature of dog domestication reveals adaptation to a starch-rich diet

Direct and indirect consequences of meiotic recombination: implications for genome evolution

Webster, Matthew T.; Hurst, Laurence D.

Part of Trends in Genetics, p. 101-109, 2012

• DOI for Direct and indirect consequences of meiotic recombination: implications for genome evolution

From where did the Western honeybee (Apis mellifera) originate?

Han, Fan; Wallberg, Andreas; Webster, Matthew T

Part of Ecology and Evolution, p. 1949-1957, 2012

• DOI for From where did the Western honeybee (Apis mellifera) originate?

Novel origins of copy number variation in the dog genome

Berglund, Jonas; Nevalainen, Elisa M; Molin, Anna-Maja; Perloski, Michele et al.

Part of Genome Biology, 2012

• DOI for Novel origins of copy number variation in the dog genome
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Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring

Lamichhaney, Sangeet; Barrio, Alvaro Martinez; Rafati, Nima; Sundström, Görel et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 19345-19350, 2012

• DOI for Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring

Rethinking dog domestication by integrating genetics, archeology, and biogeography

Larson, Greger; Karlsson, Elinor K; Perri, Angela; Webster, Matthew T et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 8878-8883, 2012

• DOI for Rethinking dog domestication by integrating genetics, archeology, and biogeography

Two Loci on Chromosome 5 Are Associated with Serum IgE Levels in Labrador Retrievers

Owczarek-Lipska, Marta; Lauber, Béatrice; Molitor, Vivianne; Meury, Sabrina et al.

Part of PLOS ONE, 2012

• DOI for Two Loci on Chromosome 5 Are Associated with Serum IgE Levels in Labrador Retrievers
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A Locus on Chromosome 5 Is Associated with Dilated Cardiomyopathy in Doberman Pinschers

Mausberg, Theresa-Bernadette; Wess, Gerhard; Simak, Julia; Keller, Lisa et al.

Part of PLoS One, 2011

• DOI for A Locus on Chromosome 5 Is Associated with Dilated Cardiomyopathy in Doberman Pinschers

A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs

Olsson, Mia; Meadows, Jennifer R. S.; Truve, Katarina; Pielberg, Gerli Rosengren et al.

Part of PLoS Genetics, 2011

• DOI for A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs

Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome

Axelsson, Erik; Webster, Matthew T.; Ratnakumar, Abhirami; Ponting, Chris P. et al.

Part of Genome Research, p. 51-63, 2011

• DOI for Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome

Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping

Vaysse, Amaury; Ratnakumar, Abhirami; Derrien, Thomas; Axelsson, Erik et al.

Part of PLOS Genetics, 2011

• DOI for Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping
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LGI2 Truncation Causes a Remitting Focal Epilepsy in Dogs

Seppala, Eija H.; Jokinen, Tarja S.; Fukata, Masaki; Fukata, Yuko et al.

Part of PLoS Genetics, 2011

• DOI for LGI2 Truncation Causes a Remitting Focal Epilepsy in Dogs