Åsa Johansson
Universitetslektor vid Institutionen för immunologi, genetik och patologi; Forskningsprogram: Genomik och Neurobiologi; Forskargrupp Åsa Johansson
- Mobiltelefon:
- 070-251 31 32
- E-post:
- asa.johansson@igp.uu.se
- Besöksadress:
- BMC, Husargatan 3
751 22 Uppsala - Postadress:
- Box 815
751 08 Uppsala
Mer information visas för dig som medarbetare om du loggar in.
Nyckelord
- artifical intelligence
- artificial intelligence
- artificiell intelligens
- bioinformatics
- bioinformatik
- biomedical research
- biomedical science
- bionformatics
- biostatistics
- cancer epidemiology
- epidemiology
- genetics
- genetik
- genomics
- genomik
- molecular-biology statistics
- pacbio
- statistical modeling
- statistical modeling and machine learning
- statistics
Biografi
Denna text finns inte på svenska, därför visas den engelska versionen.
2021 - Senior Lecture in Medical Genetics, Dept. Immunology, Genetics and Pathology, Uppsala University, Sweden.
2017 – 2021 Associated Senior Lecture, Dept. Immunology, Genetics and Pathology, Uppsala University, Sweden.
2014 – 2017 Researcher, Dept. Immunology, Genetics and Pathology, Faculty of Medicine, Uppsala University, Sweden
2013 Docent in molecular epidemiology at Uppsala university
2010 – 2014 Bioinformatician / SSMF Post Doc, Uppsala Clinical Research Center (UCR), Uppsala Academic Hospital/Uppsala University, Sweden
2008 – 2010 Postdoctoral researcher. Collaboration between: Texas Biomedical Centre (former Southwest Foundation for Medical Research - SFBR), San Antonio, Texas, US (placement the first year) and Department of Cancer Research and Molecular Medicine, NTNU, Trondheim, Norway (placement the second year)
2007 PhD in Medical Genetics, Dept. Immunology, Genetics and Pathology, Uppsala University, Sweden
Forskning
Denna text finns inte på svenska, därför visas den engelska versionen.
Every fourth individual in Europe suffer from a common disease, such as cancer, asthma, diabetes, or myocardial infarction. My research focus on identifying risk factors for common diseases, to investigate diagnostic biomarkers, and to build models to identify individuals of high disease risk. My goal is to broaden our knowledge of disease pathophysiology, which is important for developing drugs to prevent, delay progression, or relief symptoms of disease. Another goal is to enable identification of patients during an early stage of disease, or even before the disease has developed, when patients are more receptive to preventive treatments. A third goal is to identify patients that are better suited for certain treatments, or for using certain medications.
One of the main focus in my research is the genetic contribution to common diseases. During last 15 yeas, we have identified thousands of genetic variants influencing the risk of common diseases using genome-wide association studies (GWAS). Despite this success, only a fraction of the genetic contribution to disease has been identified, and most of the genetic factors remain unknown. Our ongoing projects in genetic epidemiology/genomics medicine focus on:
- Gene-based tests to identify the phenotypic effects of rare generic variants form whole-genome sequencing data
- Using Machine Learning / Artificial Intelligence tools for capturing the phenotypic effect of genetic variants
- Polygenic risk prediction to identify high risk individuals that are suited for preventive treatments
Beside genomics, my research also focuses on lifestyle factors and their effects on disease risk. Here we use traditional epidemiological approaches combined with Mendelian randomization to identify causal effects of disease related traits, with a special interest also in gene-environment interactions and sex-specific effects. Some ongoing projects include:
- The effect of obesity-related traits on risk of cancer. Here we use traditional epidemiological approaches combined with Mendelian randomization to identify causal effects of disease related traits
- The effect of endogenous and exogenous hormones (hormonal contraceptives and hormone replacement therapy) on disease risk with special focus on stroke as well as ovarian, endometrial and breast cancer.
Publikationer
Senaste publikationer
- Contemporary menopausal hormone therapy and risk of cardiovascular disease (2024)
- The risk of venous thromboembolism in oral contraceptive users (2024)
- Genotyping oral contraceptive users for venous thromboembolism risk (2024)
- The genetic landscape of neuro-related proteins in human plasma. (2024)
- Building a precision medicine infrastructure at a national level (2023)
Alla publikationer
Artiklar
- Contemporary menopausal hormone therapy and risk of cardiovascular disease (2024)
- The risk of venous thromboembolism in oral contraceptive users (2024)
- Genotyping oral contraceptive users for venous thromboembolism risk (2024)
- The genetic landscape of neuro-related proteins in human plasma. (2024)
- Building a precision medicine infrastructure at a national level (2023)
- Effects of oral contraceptives and menopausal hormone therapy on the risk of rheumatoid arthritis (2023)
- Population-based cohort study of oral contraceptive use and risk of depression (2023)
- Precision medicine in complex diseases-Molecular subgrouping for improved prediction and treatment stratification. (2023)
- Body Mass Index and the Risk of Rheumatic Disease (2023)
- Forensic prediction of sex, age, height, body mass index, hip-to-waist ratio, smoking status and lipid lowering drugs using epigenetic markers and plasma proteins (2023)
- Polygenic risk scores and risk stratification in deep vein thrombosis. (2023)
- Adiposity and sex-specific cancer risk. (2023)
- Illuminating the 'healthy obese' phenotype (2023)
- Copy number variations and their effect on the plasma proteome. (2023)
- Genetic insights into resting heart rate and its role in cardiovascular disease (2023)
- An atlas of genetic scores to predict multi-omic traits (2023)
- Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets (2023)
- Implementing precision medicine in a regionally organized healthcare system in Sweden. (2022)
- Gene-based variant analysis of whole-exome sequencing in relation to eosinophil count (2022)
- Oral Contraceptives, Hormone Replacement Therapy, and Stroke Risk (2022)
- Investigating the Effect of Estradiol Levels on the Risk of Breast, Endometrial, and Ovarian Cancer (2022)
- Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability (2022)
- A multi-omics study of circulating phospholipid markers of blood pressure (2022)
- Genome-wide association analyses of physical activity and sedentary behavior provide insights into underlying mechanisms and roles in disease prevention (2022)
- Genetic Landscape of the ACE2 Coronavirus Receptor (2022)
- Immune cells lacking Y chromosome show dysregulation of autosomal gene expression (2021)
- Causal effects of inflammatory protein biomarkers on inflammatory diseases (2021)
- Technological readiness and implementation of genomic-driven precision medicine for complex diseases (2021)
- Characterization of the human ABO genotypes and their association to common inflammatory and cardiovascular diseases in the UK Biobank (2021)
- Time-dependent effects of oral contraceptive use on breast, ovarian and endometrial cancers (2021)
- Mendelian randomisation identifies alternative splicing of the FAS death receptor as a mediator of severe COVID-19 (2021)
- Inflammation-related plasma protein levels and association with adiposity measurements in young adults (2021)
- DNA methylation in cord blood in association with prenatal depressive symptoms (2021)
- A combined genome-wide association and molecular study of age-related hearing loss in H. sapiens (2021)
- Modification of Heritability for Educational Attainment and Fluid Intelligence by Socioeconomic Deprivation in the UK Biobank (2021)
- Genome-Wide Association Study of Estradiol Levels and the Causal Effect of Estradiol on Bone Mineral Density (2021)
- Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals (2020)
- Associations of autozygosity with a broad range of human phenotypes (2019)
- Improved power and precision with whole genome sequencing data in genome-wide association studies of inflammatory biomarkers (2019)
- Epigenome-wide association study of lung function level and its change (2019)
- Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema (2019)
- Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease. (2019)
- Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects (2019)
- Breast-feeding and risk of asthma, hay fever, and eczema (2018)
- Genetic variants influencing phenotypic variance heterogeneity (2018)
- Systemic and specific effects of antihypertensive and lipid-lowering medication on plasma protein biomarkers for cardiovascular diseases (2018)
- Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits. (2018)
- Meta-analysis of exome array data identifies six novel genetic loci for lung function. (2018)
- A Meta-Analysis of Genome-Wide Association Studies of Growth Differentiation Factor-15 Concentration in Blood (2018)
- The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases. (2017)
- SweGen (2017)
- Epigenome-wide DNA methylation study of IgE concentration in relation to self-reported allergies (2017)
- Tea and coffee consumption in relation to DNA methylation in four European cohorts (2017)
- Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease (2017)
- 1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function. (2017)
- Genome-wide physical activity interactions in adiposity (2017)
- Gene-environment interaction study for BMI reveals interactions between genetic factors and physical activity, alcohol consumption and socioeconomic status. (2017)
- Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney (2017)
- Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk (2017)
- A multiple-phenotype imputation method for genetic studies (2016)
- Genome-wide DNA methylation study identifies genes associated with the cardiovascular biomarker GDF-15 (2016)
- The role of DNA methylation in the pathogenesis of disease (2016)
- Genome-wide association and Mendelian randomization study of NT-proBNP in patients with acute coronary syndrome (2016)
- Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function (2016)
- Epigenome-wide association study reveals differential DNA methylation in individuals with a history of myocardial infarction (2016)
- KLB is associated with alcohol drinking, and its gene product beta-Klotho is necessary for FGF21 regulation of alcohol preference (2016)
- Effect of genetic and environmental factors on protein biomarkers for common non-communicable disease and use of personally normalized plasma protein profiles (PNPPP) (2015)
- Protein profiling reveals consequences of lifestyle choices on predicted biological aging (2015)
- Protein profiling reveals consequences of lifestyle choices on predicted biological aging (2015)
- Modulation of Genetic Associations with Serum Urate Levels by Body-Mass-Index in Humans (2015)
- Genome-Wide Association Study Identifies That the ABO Blood Group System Influences Interleukin-10 Levels and the Risk of Clinical Events in Patients with Acute Coronary Syndrome (2015)
- NLRC4 Inflammasome Is an Important Regulator of Interleukin-18 Levels in Patients With Acute Coronary Syndromes Genome-Wide Association Study in the PLATelet inhibition and patient Outcomes Trial (PLATO) (2015)
- Directional dominance on stature and cognition in diverse human populations (2015)
- Homozygous loss-of-function variants in European cosmopolitan and isolate populations (2015)
- Genetic studies of body mass index yield new insights for obesity biology (2015)
- Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation (2015)
- Effect of genetic variations on ticagrelor plasma levels and clinical outcomes (2015)
- The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape (2015)
- Smoke-related DNA methylation changes in the etiology of human disease (2014)
- Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs (2014)
- Genome-wide association analysis identifies six new loci associated with forced vital capacity (2014)
- Defining the role of common variation in the genomic and biological architecture of adult human height (2014)
- Polymorphism of the cystatin C gene in patients with acute coronary syndromes (2014)
- Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture (2013)
- Large-scale association analysis identifies new risk loci for coronary artery disease (2013)
- Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders (2013)
- Common variants associated with plasma triglycerides and risk for coronary artery disease (2013)
- Omega-3 and omega-6 fatty acids are more efficiently synthesized in populations having a high frequency of the derived FADS-haplotype (2013)
- Prevalence and sensitization of atopic allergy and coeliac disease in the Northern Sweden Population Health Study (2013)
- Assessing The Effects Of Climate Change On Health And Lifestyle In Sub-Arctic Areas In Sweden - The Northern Sweden Population Health Study (2013)
- Are There Any Causal Relations Between Growth Differentiation Factor 15 and Outcomes in Patients With Acute Coronary Syndrome? (2013)
- Animal source food intake and association with blood cholesterol, glycerophospholipids and sphingolipids in a northern Swedish population (2013)
- Continuous Aging of the Human DNA Methylome Throughout the Human Lifespan (2013)
- Identification of genetic variants influencing the human plasma proteome (2013)
- Genome-wide association analyses identify 18 new loci associated with serum urate concentrations (2013)
- Differential Gene Expression at the Maternal-Fetal Interface in Preeclampsia Is Influenced by Gestational Age (2013)
- Common Variants in Mendelian Kidney Disease Genes and Their Association with Renal Function (2013)
- Sex-stratified Genome-wide Association Studies Including 270,000 Individuals Show Sexual Dimorphism in Genetic Loci for Anthropometric Traits (2013)
- Evaluation of the Effect of Interleukin 18 Associated Genetic Polymorphisms on Risk of Cardiovascular Events in Patients With Acute Coronary Syndrome (2013)
- Discovery and refinement of loci associated with lipid levels (2013)
- Genetic Polymorphism and Relationship to Cystatin C Concentrations and Outcome - Results From the Platelet Inhibition and Patient Outcomes Study (2013)
- Genetic Adaptation of Fatty-Acid Metabolism (2012)
- Integration of genome-wide association studies with biological knowledge identifies six novel genes related to kidney function (2012)
- Genome-Wide Association Study Identifies Novel Loci Associated with Circulating Phospho- and Sphingolipid Concentrations (2012)
- Evidence of Inbreeding Depression on Human Height (2012)
- Genome-Wide Association and Functional Follow-Up Reveals New Loci for Kidney Function (2012)
- Polymorphisms in sh2b1 and spns1 loci are associated with triglyceride levels in a healthy population in northern Sweden (2012)
- Sequencing of high-complexity DNA pools for identification of nucleotide and structural variants in regions associated with complex traits (2012)
- Genetic architecture of circulating lipid levels (2011)
- Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults (2011)
- Identification of ACOX2 as a shared genetic risk factor for preeclampsia and cardiovascular disease (2011)
- Partial correlation network analyses to detect altered gene interactions in human disease (2011)
- A Comprehensive Evaluation of Potential Lung Function Associated Genes in the SpiroMeta General Population Sample (2011)
- A Genome-Wide Screen for Interactions Reveals a New Locus on 4p15 Modifying the Effect of Waist-to-Hip Ratio on Total Cholesterol (2011)
- Hundreds of variants clustered in genomic loci and biological pathways affect human height (2010)
- STOX2 but not STOX1 is differentially expressed in decidua from pre-eclamptic women (2010)
- Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution (2010)
- The Northern Swedish Population Health Study (NSPHS) (2010)
- Modeling of Environmental Effects in Genome-Wide Association Studies Identifies SLC2A2 and HP as Novel Loci Influencing Serum Cholesterol Levels (2010)
- Linkage and genome-wide association analysis of obesity-related phenotypes (2010)
- New loci associated with kidney function and chronic kidney disease (2010)
- Genes predict village of origin in rural Europe (2010)
- A meta-analysis of genome-wide data from five European isolates reveals an association of COL22A1, SYT1, and GABRR2 with serum creatinine level (2010)
- Genome-wide association study identifies five loci associated with lung function (2010)
- Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index (2010)
- Biological, clinical and population relevance of 95 loci for blood lipids (2010)
- Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts (2009)
- NRXN3 is a novel locus for waist circumference (2009)
- Genetic determinants of circulating sphingolipid concentrations in European populations (2009)
- Extended haplotypes in the growth hormone releasing hormone receptor gene (GHRHR) are associated with normal variation in height (2009)
- Common variants in the JAZF1 gene associated with height identified by linkage and genome-wide association analysis (2009)
- Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations (2009)
- Adherence to a traditional lifestyle affects food and nutrient intake among modern Swedish Sami (2009)
- Identification of local selective sweeps in human populations since the exodus from Africa (2008)
- Genetic origin of the Swedish Sami inferred from HLA class I and class II allele frequencies (2008)
- Evaluation of the SNP tagging approach in an independent population sample (2007)
- Lifestyle, genetics, and disease in Sami. (2006)
- Linkage disequilibrium between microsatellite markers in the Swedish Sami relative to a worldwide selection of populations. (2005)
- Linkage disequilibrium between microsatellite markers in the Swedish Sami relative to a worldwide selection of populations (2005)
- A novel method for automatic genotyping of microsatellite markers based on parametric pattern recognition. (2003)
- A novel method for automatic genotyping of microsatellite markers based on parametric pattern recognition (2003)
- T2T-CHM13 improves read mapping and detection of clinically relevant variation