Jonas Almlöf

Clonal hematopoiesis of indeterminate potential in high grade B-cell lymphomas: clinicobiological associations and further insight with single-cell multiomics analysis

Hesselager, Caroline; Hollander, Peter; Pettersson, Emma; Enblad, Gunilla et al.

Ingår i Blood Cancer Journal, 2026

• DOI för Clonal hematopoiesis of indeterminate potential in high grade B-cell lymphomas: clinicobiological associations and further insight with single-cell multiomics analysis
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Accumulation of high-risk genetic features after chemoimmunotherapy: A longitudinal study in mantle cell lymphoma

Nikkarinen, Anna; Almlöf, Jonas; Österroos, Albin; Ladenvall, Claes et al.

Ingår i Leukemia, s. 681-684, 2026

• DOI för Accumulation of high-risk genetic features after chemoimmunotherapy: A longitudinal study in mantle cell lymphoma

Single-cell sequencing reveals shared clonal signatures in nonmalignant B and tumor cells in T-prolymphocytic leukemia

Hesselager, Caroline; Thörn, Ingrid; Marincevic, Millaray; Ladenvall, Claes et al.

Ingår i Blood neoplasia, 2025

• DOI för Single-cell sequencing reveals shared clonal signatures in nonmalignant B and tumor cells in T-prolymphocytic leukemia
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The evolutionary history of metastatic pancreatic neuroendocrine tumours reveals a therapy driven route to high-grade transformation

Backman, Samuel; Botling, Johan; Nord, Helena; Ghosal, Suman et al.

Ingår i Journal of Pathology, s. 357-370, 2024

• DOI för The evolutionary history of metastatic pancreatic neuroendocrine tumours reveals a therapy driven route to high-grade transformation
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Complement C4 Copy Number Variation is Linked to SSA/Ro and SSB/La Autoantibodies in Systemic Inflammatory Autoimmune Diseases

Lundtoft, Christian; Pucholt, Pascal; Martin, Myriam; Bianchi, Matteo et al.

Ingår i Arthritis & Rheumatology, s. 1440-1450, 2022

• DOI för Complement C4 Copy Number Variation is Linked to SSA/Ro and SSB/La Autoantibodies in Systemic Inflammatory Autoimmune Diseases
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Clonal hematopoiesis of indeterminate potential in high grade B-cell lymphomas: clinicobiological associations and further insight with single-cell multiomics analysis

Hesselager, Caroline; Hollander, Peter; Pettersson, Emma; Enblad, Gunilla et al.

Ingår i Blood Cancer Journal, 2026

• DOI för Clonal hematopoiesis of indeterminate potential in high grade B-cell lymphomas: clinicobiological associations and further insight with single-cell multiomics analysis
• Ladda ner fulltext (pdf) av Clonal hematopoiesis of indeterminate potential in high grade B-cell lymphomas: clinicobiological associations and further insight with single-cell multiomics analysis

Accumulation of high-risk genetic features after chemoimmunotherapy: A longitudinal study in mantle cell lymphoma

Nikkarinen, Anna; Almlöf, Jonas; Österroos, Albin; Ladenvall, Claes et al.

Ingår i Leukemia, s. 681-684, 2026

• DOI för Accumulation of high-risk genetic features after chemoimmunotherapy: A longitudinal study in mantle cell lymphoma

Single-cell sequencing reveals shared clonal signatures in nonmalignant B and tumor cells in T-prolymphocytic leukemia

Hesselager, Caroline; Thörn, Ingrid; Marincevic, Millaray; Ladenvall, Claes et al.

Ingår i Blood neoplasia, 2025

• DOI för Single-cell sequencing reveals shared clonal signatures in nonmalignant B and tumor cells in T-prolymphocytic leukemia
• Ladda ner fulltext (pdf) av Single-cell sequencing reveals shared clonal signatures in nonmalignant B and tumor cells in T-prolymphocytic leukemia

The evolutionary history of metastatic pancreatic neuroendocrine tumours reveals a therapy driven route to high-grade transformation

Backman, Samuel; Botling, Johan; Nord, Helena; Ghosal, Suman et al.

Ingår i Journal of Pathology, s. 357-370, 2024

• DOI för The evolutionary history of metastatic pancreatic neuroendocrine tumours reveals a therapy driven route to high-grade transformation
• Ladda ner fulltext (pdf) av The evolutionary history of metastatic pancreatic neuroendocrine tumours reveals a therapy driven route to high-grade transformation

Complement C4 Copy Number Variation is Linked to SSA/Ro and SSB/La Autoantibodies in Systemic Inflammatory Autoimmune Diseases

Lundtoft, Christian; Pucholt, Pascal; Martin, Myriam; Bianchi, Matteo et al.

Ingår i Arthritis & Rheumatology, s. 1440-1450, 2022

• DOI för Complement C4 Copy Number Variation is Linked to SSA/Ro and SSB/La Autoantibodies in Systemic Inflammatory Autoimmune Diseases
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Evaluation of NTRK immunohistochemistry as a screening method for NTRK gene fusion detection in non-small cell lung cancer

Elfving, Hedvig; Broström, Erika; Moens, Lotte N.J.; Almlöf, Jonas et al.

Ingår i Lung Cancer, s. 53-59, 2021

• DOI för Evaluation of NTRK immunohistochemistry as a screening method for NTRK gene fusion detection in non-small cell lung cancer

Contributions of de novo variants to systemic lupus erythematosus

Carlsson Almlöf, Jonas; Nystedt, Sara; Mechtidou, Aikaterini; Leonard, Dag et al.

Ingår i European Journal of Human Genetics, s. 184-193, 2021

• DOI för Contributions of de novo variants to systemic lupus erythematosus
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Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling

Lundtoft, Christian; Pucholt, Pascal; Imgenberg-Kreuz, Juliana; Carlsson Almlöf, Jonas et al.

Ingår i PLOS Genetics, 2020

• DOI för Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling
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Shared and Unique Patterns of DNA Methylation in Systemic Lupus Erythematosus and Primary Sjogren's Syndrome

Imgenberg-Kreuz, Juliana; Carlsson Almlöf, Jonas; Leonard, Dag; Sjöwall, Christopher et al.

Ingår i Frontiers in Immunology, 2019

• DOI för Shared and Unique Patterns of DNA Methylation in Systemic Lupus Erythematosus and Primary Sjogren's Syndrome
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Whole-genome sequencing identifies complex contributions to genetic risk by variants in genes causing monogenic systemic lupus erythematosus

Almlöf, Jonas Carlsson; Nystedt, Sara; Leonard, Dag; Eloranta, Maija-Leena et al.

Ingår i Human Genetics, s. 141-150, 2019

• DOI för Whole-genome sequencing identifies complex contributions to genetic risk by variants in genes causing monogenic systemic lupus erythematosus
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DNA methylation mapping identifies gene regulatory effects in patients with systemic lupus erythematosus

Imgenberg-Kreuz, Juliana; Almlöf, Jonas Carlsson; Leonard, Dag; Alexsson, Andrei et al.

Ingår i Annals of the Rheumatic Diseases, s. 736-743, 2018

• DOI för DNA methylation mapping identifies gene regulatory effects in patients with systemic lupus erythematosus
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Shared and unique patterns of DNA methylation in primary Sjogren's syndrome and systemic lupus erythematosus

Imgenberg-Kreuz, Juliana; Leonard, Dag; Carlsson Almlöf, Jonas; Rantapaa-Dahlqvist, S. et al.

Ingår i Scandinavian Journal of Rheumatology, s. 3-3, 2018

Novel risk genes for systemic lupus erythematosus predicted by random forest classification

Carlsson Almlöf, Jonas; Alexsson, Andrei; Imgenberg-Kreuz, Juliana; Sylwan, Lina et al.

Ingår i Scientific Reports, 2017

• DOI för Novel risk genes for systemic lupus erythematosus predicted by random forest classification
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Treatment-Associated DNA Methylation Patterns in Systemic Lupus Erythematosus

Imgenberg-Kreuz, Juliana; Almlöf, Jonas Carlsson; Leonard, Dag; Nordmark, Gunnel et al.

Ingår i Arthritis & Rheumatology, 2017

Transancestral mapping and genetic load in systemic lupus erythematosus

Langefeld, Carl D.; Ainsworth, Hannah C.; Graham, Deborah S. Cunninghame; Kelly, Jennifer A. et al.

Ingår i Nature Communications, 2017

• DOI för Transancestral mapping and genetic load in systemic lupus erythematosus
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Genome-wide DNA methylation analysis in multiple tissues in primary Sjögren's syndrome reveals regulatory effects at interferon-induced genes

Imgenberg-Kreuz, Juliana; Sandling, Johanna K.; Almlöf, Jonas Carlsson; Nordlund, Jessica et al.

Ingår i Annals of the Rheumatic Diseases, s. 2029-2036, 2016

• DOI för Genome-wide DNA methylation analysis in multiple tissues in primary Sjögren's syndrome reveals regulatory effects at interferon-induced genes
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Immunoseq: the identification of functionally relevant variants through targeted capture and sequencing of active regulatory regions in human immune cells

Morin, Andreanne; Kwan, Tony; Ge, Bing; Letourneau, Louis et al.

Ingår i BMC Medical Genomics, 2016

• DOI för Immunoseq: the identification of functionally relevant variants through targeted capture and sequencing of active regulatory regions in human immune cells
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Deep targeted sequencing in pediatric acute lymphoblastic leukemia unveils distinct mutational patterns between genetic subtypes and novel relapse-associated genes

Lindqvist, C. Mårten; Lundmark, Anders; Nordlund, Jessica; Freyhult, Eva et al.

Ingår i Oncotarget, s. 64071-64088, 2016

• DOI för Deep targeted sequencing in pediatric acute lymphoblastic leukemia unveils distinct mutational patterns between genetic subtypes and novel relapse-associated genes

CopyNumber450kCancer: baseline correction for accurate copy number calling from the 450k methylation array

Marzouka, Nour-al-dain; Nordlund, Jessica; Bäcklin, Christofer L.; Lönnerholm, Gudmar et al.

Ingår i Bioinformatics, s. 1080-1082, 2016

• DOI för CopyNumber450kCancer: baseline correction for accurate copy number calling from the 450k methylation array
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Genome-Wide Analysis of DNA Methylation Profiles in Multiple Tissues in Primary Sjogren's Syndrome

Imgenberg-Kreuz, Juliana; Sandling, Johanna K.; Carlsson Almlöf, Jonas; Omdal, Roald et al.

Ingår i Scandinavian Journal of Immunology, s. 412-412, 2015

Genome-wide analysis of DNA methylation in systemic lupus erythematosus

Sandling, Johanna K.; Imgenberg-Kreuz, Juliana; Carlsson Almlöf, Jonas; Nordmark, Gunnel et al.

Ingår i Clinical and Experimental Rheumatology, 2015

Hypomethylation in Enhancer and Promoter Regions of Interferon Regulated Genes in Multiple Tissues Is Associated with Primary Sjogren's Syndrome

Imgenberg-Kreuz, Juliana; Sandling, Johanna K.; Almlöf, Jonas Carlsson; Nordlund, Jessica et al.

Ingår i Arthritis & Rheumatology, 2015

• DOI för Hypomethylation in Enhancer and Promoter Regions of Interferon Regulated Genes in Multiple Tissues Is Associated with Primary Sjogren's Syndrome

Genome-Wide DNA Methylation Analysis of CD19+B Cells in Primary Sjogren's Syndrome

Nordmark, Gunnel; Imgenberg-Kreuz, Juliana; Almlöf, Jonas Carlsson; Nordlund, Jessica et al.

Ingår i Arthritis & Rheumatology, 2014

Allelic expression mapping across cellular lineages to establish impact of non-coding SNPs

Adoue, Veronique; Schiavi, Alicia; Light, Nicholas; Carlsson Almlöf, Jonas et al.

Ingår i Molecular Systems Biology, s. 754, 2014

• DOI för Allelic expression mapping across cellular lineages to establish impact of non-coding SNPs
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Single nucleotide polymorphisms with cis-regulatory effects on long non-coding transcripts in human primary monocytes

Almlöf, Jonas; Lundmark, Per; Lundmark, Anders; Ge, Bing et al.

Ingår i PLOS ONE, 2014

• DOI för Single nucleotide polymorphisms with cis-regulatory effects on long non-coding transcripts in human primary monocytes
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Transcriptome and genome sequencing uncovers functional variation in humans

Lappalainen, Tuuli; Sammeth, Michael; Friedländer, Marc R; 't Hoen, Peter A C et al.

Ingår i Nature, s. 506-511, 2013

• DOI för Transcriptome and genome sequencing uncovers functional variation in humans

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

't Hoen, Peter A C; Friedländer, Marc R; Almlöf, Jonas; Sammeth, Michael et al.

Ingår i Nature Biotechnology, s. 1015-1022, 2013

• DOI för Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

Powerful Identification of Cis-regulatory SNPs in Human Primary Monocytes Using Allele-Specific Gene Expression

Almlöf, Jonas Carlsson; Lundmark, Per; Lundmark, Anders; Ge, B. et al.

Ingår i PLOS ONE, 2012

• DOI för Powerful Identification of Cis-regulatory SNPs in Human Primary Monocytes Using Allele-Specific Gene Expression
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DNA methylation classification in combination with RNA-sequencing for subtype discovery in pediatric B-cell precursor acute lymphoblastic leukemia

Marincevic-Zuniga, Yanara; Nystedt, Sara; Nilsson, Sara; Almlöf, Jonas Carlsson et al.

Variants in BANK1 are associated with lupus nephritis

Bolin, Karin; Leonard, Dag; Sandling, Johanna K.; Imgenberg-Kreuz, Juliana et al.

Accumulation of High-Risk Genetic Features after Chemoimmunotherapy: A Longitudinal Study in Mantle Cell Lymphoma

Nikkarinen, Anna; Almlöf, Jonas; Österroos, Albin; Ladenvall, Claes et al.

Impact of Clonal Hematopoiesis on Hematological Treatment Toxicity in Mantle Cell Lymphoma Patients

Nikkarinen, Anna; Selvin, Tove; Almlöf, Jonas; Österroos, Albin et al.