Björn Nystedt

Genome sequences of six clinical isolates of Candida parapsilosis exhibiting different degrees and temporal regulation of biofilm formation

Shafeeq, Sulman; Pannanusorn, Srisuda; Dainat, Jacques; Dadvar, Ali et al.

Ingår i Microbiology Resource Announcements, 2025

• DOI för Genome sequences of six clinical isolates of Candida parapsilosis exhibiting different degrees and temporal regulation of biofilm formation
• Ladda ner fulltext (pdf) av Genome sequences of six clinical isolates of Candida parapsilosis exhibiting different degrees and temporal regulation of biofilm formation

Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome

Zgadzay, Yury; Mirabello, Claudio; Wanes, George; Panek, Tomas et al.

Ingår i Structure, s. 1904-1915000, 2025

• DOI för Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome
• Ladda ner fulltext (pdf) av Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome

The spatiotemporal distribution of human pathogens in ancient Eurasia

Sikora, Martin; Canteri, Elisabetta; Fernandez-Guerra, Antonio; Oskolkov, Nikolay et al.

Ingår i Nature, 2025

• DOI för The spatiotemporal distribution of human pathogens in ancient Eurasia
• Ladda ner fulltext (pdf) av The spatiotemporal distribution of human pathogens in ancient Eurasia

Unmasking AlphaFold to integrate experiments and predictions in multimeric complexes

Mirabello, Claudio; Wallner, Bjorn; Nystedt, Björn; Azinas, Stavros et al.

Ingår i Nature Communications, 2024

• DOI för Unmasking AlphaFold to integrate experiments and predictions in multimeric complexes
• Ladda ner fulltext (pdf) av Unmasking AlphaFold to integrate experiments and predictions in multimeric complexes

Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Barcala, Maximiliano Estravis; van der Valk, Tom; Chen, Zhiqiang; Funda, Tomas et al.

Ingår i The Plant Journal, s. 944-955, 2024

• DOI för Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species
• Ladda ner fulltext (pdf) av Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Genome sequences of six clinical isolates of Candida parapsilosis exhibiting different degrees and temporal regulation of biofilm formation

Shafeeq, Sulman; Pannanusorn, Srisuda; Dainat, Jacques; Dadvar, Ali et al.

Ingår i Microbiology Resource Announcements, 2025

• DOI för Genome sequences of six clinical isolates of Candida parapsilosis exhibiting different degrees and temporal regulation of biofilm formation
• Ladda ner fulltext (pdf) av Genome sequences of six clinical isolates of Candida parapsilosis exhibiting different degrees and temporal regulation of biofilm formation

Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome

Zgadzay, Yury; Mirabello, Claudio; Wanes, George; Panek, Tomas et al.

Ingår i Structure, s. 1904-1915000, 2025

• DOI för Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome
• Ladda ner fulltext (pdf) av Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome

The spatiotemporal distribution of human pathogens in ancient Eurasia

Sikora, Martin; Canteri, Elisabetta; Fernandez-Guerra, Antonio; Oskolkov, Nikolay et al.

Ingår i Nature, 2025

• DOI för The spatiotemporal distribution of human pathogens in ancient Eurasia
• Ladda ner fulltext (pdf) av The spatiotemporal distribution of human pathogens in ancient Eurasia

Unmasking AlphaFold to integrate experiments and predictions in multimeric complexes

Mirabello, Claudio; Wallner, Bjorn; Nystedt, Björn; Azinas, Stavros et al.

Ingår i Nature Communications, 2024

• DOI för Unmasking AlphaFold to integrate experiments and predictions in multimeric complexes
• Ladda ner fulltext (pdf) av Unmasking AlphaFold to integrate experiments and predictions in multimeric complexes

Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Barcala, Maximiliano Estravis; van der Valk, Tom; Chen, Zhiqiang; Funda, Tomas et al.

Ingår i The Plant Journal, s. 944-955, 2024

• DOI för Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species
• Ladda ner fulltext (pdf) av Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species

Proteogenomics decodes the evolution of human ipsilateral breast cancer

De Marchi, Tommaso; Pyl, Paul Theodor; Sjöström, Martin; Reinsbach, Susanne Erika et al.

Ingår i Communications Biology, 2023

• DOI för Proteogenomics decodes the evolution of human ipsilateral breast cancer
• Ladda ner fulltext (pdf) av Proteogenomics decodes the evolution of human ipsilateral breast cancer

Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability

Kierczak, Marcin; Rafati, Nima; Höglund, Julia; Gourlé, Hadrien et al.

Ingår i Nature Communications, 2022

• DOI för Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability
• Ladda ner fulltext (pdf) av Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability

Environmentally induced DNA methylation is inherited across generations in an aquatic keystone species

Feiner, Nathalie; Radersma, Reinder; Vasquez, Louella; Ringner, Markus et al.

Ingår i iScience, 2022

• DOI för Environmentally induced DNA methylation is inherited across generations in an aquatic keystone species
• Ladda ner fulltext (pdf) av Environmentally induced DNA methylation is inherited across generations in an aquatic keystone species

GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species

Kutschera, Verena E.; Kierczak, Marcin; van der Valk, Tom; von Seth, Johanna et al.

Ingår i BMC Bioinformatics, 2022

• DOI för GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species
• Ladda ner fulltext (pdf) av GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species

Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level

Gutierrez-Valencia, Juanita; Fracassetti, Marco; Berdan, Emma L.; Bunikis, Ignas et al.

Ingår i Current Biology, s. 4360-4371000000, 2022

• DOI för Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level
• Ladda ner fulltext (pdf) av Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level

High-throughput muscle fiber typing from RNA sequencing data

Oskolkov, Nikolay; Santel, Malgorzata; Parikh, Hemang M.; Ekstrom, Ola et al.

Ingår i Skeletal Muscle, 2022

• DOI för High-throughput muscle fiber typing from RNA sequencing data
• Ladda ner fulltext (pdf) av High-throughput muscle fiber typing from RNA sequencing data

Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions

Alm Rosenblad, Magnus; Abramova, Anna; Lind, Ulrika; Ólason, Páll I. et al.

Ingår i Marine Biotechnology, s. 402-416, 2021

• DOI för Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions
• Ladda ner fulltext (pdf) av Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions

Avian Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and W Degeneration

Sigeman, Hanna; Strandh, Maria; Proux-Wera, Estelle; Kutschera, Verena E. et al.

Ingår i Molecular biology and evolution, s. 5275-5291, 2021

• DOI för Avian Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and W Degeneration
• Ladda ner fulltext (pdf) av Avian Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and W Degeneration

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants

Garcia, Maxime; Juhos, Szilveszter; Larsson, Malin; Olason, Pall I. et al.

Ingår i F1000 Research, 2020

• DOI för Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants
• Ladda ner fulltext (pdf) av Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants

Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia

Halvorsen, Matthew; Huh, Ruth; Oskolkov, Nikolay; Wen, Jia et al.

Ingår i Nature Communications, 2020

• DOI för Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia
• Ladda ner fulltext (pdf) av Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia

Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion

Almeida, Pedro; Proux-Wera, Estelle; Churcher, Allison; Soler, Lucile et al.

Ingår i BMC Biology, 2020

• DOI för Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion
• Ladda ner fulltext (pdf) av Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion

The genomic footprint of sexual conflict

Sayadi, Ahmed; Martínez Barrio, Álvaro; Immonen, Elina; Dainat, Jacques et al.

Ingår i Nature Ecology & Evolution, s. 1725-1730, 2019

• DOI för The genomic footprint of sexual conflict
• Ladda ner fulltext (pdf) av The genomic footprint of sexual conflict

A major locus controls local adaptation and adaptive life history variation in a perennial plant

Wang, Jing; Ding, Jihua; Tan, Biyue; Robinson, Kathryn M. et al.

Ingår i Genome Biology, 2018

• DOI för A major locus controls local adaptation and adaptive life history variation in a perennial plant

Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen

Lin, Yao-Cheng; Wang, Jing; Delhomme, Nicolas; Schiffthaler, Bastian et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2018

• DOI för Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
• Ladda ner fulltext (pdf) av Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen

Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis

Zhu, Yafeng; Engstrom, Par G.; Tellgren-Roth, Christian; Baudo, Charles D. et al.

Ingår i Nucleic Acids Research, s. 2629-2643, 2017

• DOI för Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis
• Ladda ner fulltext (pdf) av Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis

SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population

Ameur, Adam; Dahlberg, Johan; Olason, Pall; Vezzi, Francesco et al.

Ingår i European Journal of Human Genetics, s. 1253-1260, 2017

• DOI för SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population
• Ladda ner fulltext (pdf) av SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population

Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification

Reischauer, Sven; Stone, Oliver A.; Villasenor, Alethia; Chi, Neil et al.

Ingår i Nature, s. 294-+, 2016

• DOI för Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

Martínez Barrio, Álvaro; Lamichhaney, Sangeet; Fan, Guangyi; Rafati, Nima et al.

Ingår i eLIFE, 2016

• DOI för The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing
• Ladda ner fulltext (pdf) av The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

The Chironomus tentans genome sequence and the organization of the Balbiani ring genes

Kutsenko, Alexey; Svensson, Thomas; Nystedt, Björn; Lundeberg, Joakim et al.

Ingår i BMC Genomics, s. 819, 2014

• DOI för The Chironomus tentans genome sequence and the organization of the Balbiani ring genes
• Ladda ner fulltext (pdf) av The Chironomus tentans genome sequence and the organization of the Balbiani ring genes

A Gene Transfer Agent and a Dynamic Repertoire of Secretion Systems Hold the Keys to the Explosive Radiation of the Emerging Pathogen Bartonella

Guy, Lionel; Nystedt, Björn; Toft, Christina; Zaremba-Niedzwiedzka, Katarzyna et al.

Ingår i PLOS Genetics, 2013

• DOI för A Gene Transfer Agent and a Dynamic Repertoire of Secretion Systems Hold the Keys to the Explosive Radiation of the Emerging Pathogen Bartonella
• Ladda ner fulltext (pdf) av A Gene Transfer Agent and a Dynamic Repertoire of Secretion Systems Hold the Keys to the Explosive Radiation of the Emerging Pathogen Bartonella

Amplified fragment length polymorphism (AFLP) analysis of closely related wild and captive tsetse fly (Glossina morsitans morsitans) populations

Lall, Gurdeep K.; Darby, Alistair C.; Nystedt, Björn; MacLeod, Ewan T. et al.

Ingår i Parasites & Vectors, s. 47, 2010

• DOI för Amplified fragment length polymorphism (AFLP) analysis of closely related wild and captive tsetse fly (Glossina morsitans morsitans) populations

Computational Resources in Infectious Disease: Limitations and Challenges

Berglund, Eva C.; Nystedt, Björn; Andersson, Siv G. E.

Ingår i PloS Computational Biology, 2009

• DOI för Computational Resources in Infectious Disease: Limitations and Challenges

Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts

Tamas, Ivica; Wernegreen, Jennifer J; Nystedt, Björn; Kauppinen, Seth N et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 14934-14939, 2008

• DOI för Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts

Diversifying Selection and Concerted Evolution of a Type IV Secretion System in Bartonella

Nystedt, Björn; Frank, Carolin; Thollesson, Mikael; Andersson, Siv

Ingår i Molecular biology and evolution, s. 287-300, 2008

• DOI för Diversifying Selection and Concerted Evolution of a Type IV Secretion System in Bartonella

Protein evolutionary rates correlate with expression independently of synonymous substitutions in Helicobacter pylori

Sällström, Björn; Arnaout, Ramy A.; Davids, Wagied; Bjelkmar, Pär et al.

Ingår i Journal of Molecular Evolution, s. 600-614, 2006

• DOI för Protein evolutionary rates correlate with expression independently of synonymous substitutions in Helicobacter pylori

Modeling drug- and system-related changes in body temperature: application to clomethiazole-induced hypothermia, long-lasting tolerance development, and circadian rhythm in rats

Visser, Sandra A. G.; Sällström, Björn; Forsberg, Tomas; Peletier, Lambertus A. et al.

Ingår i Journal of Pharmacology and Experimental Therapeutics, s. 209-219, 2006

• DOI för Modeling drug- and system-related changes in body temperature: application to clomethiazole-induced hypothermia, long-lasting tolerance development, and circadian rhythm in rats

A Pharmacodynamic Turnover Model Capturing Asymmetric Circadian Baselines of Body Temperature, Heart Rate and Blood Pressure in Rats: Challenges in Terms of Tolerance and Animal-handling Effects

Sällström, Björn; Visser, Sandra A G; Forsberg, Tomas; Peletier, Lambertus A et al.

Ingår i Journal of Pharmacokinetics and Pharmacodynamics, s. 835-859, 2005

• DOI för A Pharmacodynamic Turnover Model Capturing Asymmetric Circadian Baselines of Body Temperature, Heart Rate and Blood Pressure in Rats: Challenges in Terms of Tolerance and Animal-handling Effects

Genome reduction in the alpha-Proteobacteria

Sällström, Björn; Andersson, Siv

Ingår i Current Opinion in Microbiology, s. 579-585, 2005

• DOI för Genome reduction in the alpha-Proteobacteria

Genome reduction in the alpha-Proteobacteria

Sällström, Björn; Andersson, Siv G.E.

Ingår i Current Opinion in Microbiology, s. 579-585, 2005

• DOI för Genome reduction in the alpha-Proteobacteria

Evolutionary Processes and Genome Dynamics in Host-Adapted Bacteria

Nystedt, Björn

2009

• Ladda ner fulltext (pdf) av Evolutionary Processes and Genome Dynamics in Host-Adapted Bacteria

Evolution of Host Adaptation Systems in  the Mammalian Blood Specialist Bartonella

Nystedt, Björn; Guy, Lionel; Berglund, Eva; Bjursell, Magnus et al.

Low-coverage pyrosequencing reveals recombination and run-off replication in Bartonella henselae strains

Guy, Lionel; Nystedt, Björn; Sun, Yu; Berglund, Eva C. et al.