David Fange

LacI strikes a balance between stability and inducibility

Yuan, Jinwen; Lüking, Malin; Zikrin, Spartak; Sen, Beer Chakra et al.

Ingår i Nucleic Acids Research, 2026

• DOI för LacI strikes a balance between stability and inducibility
• Ladda ner fulltext (pdf) av LacI strikes a balance between stability and inducibility

Pooled optical screening in bacteria using chromosomally expressed barcodes

Soares, Ruben R. G.; Garcia-Soriano, Daniela A.; Larsson, Jimmy; Fange, David et al.

Ingår i Communications Biology, 2025

• DOI för Pooled optical screening in bacteria using chromosomally expressed barcodes
• Ladda ner fulltext (pdf) av Pooled optical screening in bacteria using chromosomally expressed barcodes

The Escherichia coli chromosome moves to the replisome

Gras, Konrad; Fange, David; Elf, Johan

Ingår i Nature Communications, 2024

• DOI för The Escherichia coli chromosome moves to the replisome
• Ladda ner fulltext (pdf) av The Escherichia coli chromosome moves to the replisome

Regulatory elements coordinating initiation of chromosome replication to the Escherichia coli cell cycle

Knöppel, Anna; Broström, Oscar; Gras, Konrad; Elf, Johan et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2023

• DOI för Regulatory elements coordinating initiation of chromosome replication to the Escherichia coli cell cycle
• Ladda ner fulltext (pdf) av Regulatory elements coordinating initiation of chromosome replication to the Escherichia coli cell cycle

Time-resolved imaging-based CRISPRi screening

Camsund, Daniel; Lawson, Michael J.; Larsson, Jimmy; Jones, Daniel et al.

Ingår i Nature Methods, s. 86-92, 2020

• DOI för Time-resolved imaging-based CRISPRi screening

LacI strikes a balance between stability and inducibility

Yuan, Jinwen; Lüking, Malin; Zikrin, Spartak; Sen, Beer Chakra et al.

Ingår i Nucleic Acids Research, 2026

• DOI för LacI strikes a balance between stability and inducibility
• Ladda ner fulltext (pdf) av LacI strikes a balance between stability and inducibility

Pooled optical screening in bacteria using chromosomally expressed barcodes

Soares, Ruben R. G.; Garcia-Soriano, Daniela A.; Larsson, Jimmy; Fange, David et al.

Ingår i Communications Biology, 2025

• DOI för Pooled optical screening in bacteria using chromosomally expressed barcodes
• Ladda ner fulltext (pdf) av Pooled optical screening in bacteria using chromosomally expressed barcodes

The Escherichia coli chromosome moves to the replisome

Gras, Konrad; Fange, David; Elf, Johan

Ingår i Nature Communications, 2024

• DOI för The Escherichia coli chromosome moves to the replisome
• Ladda ner fulltext (pdf) av The Escherichia coli chromosome moves to the replisome

Regulatory elements coordinating initiation of chromosome replication to the Escherichia coli cell cycle

Knöppel, Anna; Broström, Oscar; Gras, Konrad; Elf, Johan et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2023

• DOI för Regulatory elements coordinating initiation of chromosome replication to the Escherichia coli cell cycle
• Ladda ner fulltext (pdf) av Regulatory elements coordinating initiation of chromosome replication to the Escherichia coli cell cycle

Time-resolved imaging-based CRISPRi screening

Camsund, Daniel; Lawson, Michael J.; Larsson, Jimmy; Jones, Daniel et al.

Ingår i Nature Methods, s. 86-92, 2020

• DOI för Time-resolved imaging-based CRISPRi screening

In situ genotyping of a pooled strain library after characterizing complex phenotypes

Lawson, Michael J.; Camsund, Daniel; Larsson, Jimmy; Baltekin, Özden et al.

Ingår i Molecular Systems Biology, 2017

• DOI för In situ genotyping of a pooled strain library after characterizing complex phenotypes
• Ladda ner fulltext (pdf) av In situ genotyping of a pooled strain library after characterizing complex phenotypes

Kinetics of dCas9 target search in Escherichia coli

Jones, Daniel; Leroy, Prune; Unoson, Cecilia; Fange, David et al.

Ingår i Science, s. 1420-1423, 2017

• DOI för Kinetics of dCas9 target search in Escherichia coli

Simulated single molecule microscopy with SMeagol

Lindén, Martin; Ćurić, Vladimir; Boucharin, Alexis; Fange, David et al.

Ingår i Bioinformatics, s. 2394-2395, 2016

• DOI för Simulated single molecule microscopy with SMeagol
• Ladda ner fulltext (pdf) av Simulated single molecule microscopy with SMeagol

The Synchronization of Replication and Division Cycles in Individual E. coli Cells

Walldén, Mats; Fange, David; Lundius, Ebba Gregorsson; Baltekin, Özden et al.

Ingår i Cell, s. 729-739, 2016

• DOI för The Synchronization of Replication and Division Cycles in Individual E. coli Cells

Single-particle tracking reveals that free ribosomal subunits are not excluded from the Escherichia coli nucleoid

Sanamrad, Arash; Persson, Fredrik; Lundius, Ebba G.; Fange, David et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 11413-11418, 2014

• DOI för Single-particle tracking reveals that free ribosomal subunits are not excluded from the Escherichia coli nucleoid

Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation

Hammar, Petter; Walldén, Mats; Fange, David; Persson, Fredrik et al.

Ingår i Nature Genetics, s. 405-+, 2014

• DOI för Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation

Thermodynamic Modeling of Variations in the Rate of RNA Chain Elongation of E-coli rrn Operons

Fange, David; Mellenius, Harriet; Dennis, Patrick P.; Ehrenberg, Måns

Ingår i Biophysical Journal, s. 55-64, 2014

• DOI för Thermodynamic Modeling of Variations in the Rate of RNA Chain Elongation of E-coli rrn Operons

Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models

Marklund, Erik G.; Mahmutovic, Anel; Berg, Otto G.; Hammar, Petter et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 19796-19801, 2013

• DOI för Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models

Lost in presumption: stochastic reactions in spatial models

Mahmutovic, Anel; Fange, David; Berg, Otto G.; Elf, Johan

Ingår i Nature Methods, s. 1163-1166, 2012

• DOI för Lost in presumption: stochastic reactions in spatial models

MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic limit

Fange, David; Mahmutovic, Anel; Elf, Johan

Ingår i Bioinformatics, s. 3155-3157, 2012

• DOI för MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic limit

Stochastic reaction-diffusion kinetics in the microscopic limit

Fange, David; Berg, Otto G; Sjöberg, Paul; Elf, Johan

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 19820-19825, 2010

• DOI för Stochastic reaction-diffusion kinetics in the microscopic limit

Drug efflux pump deficiency and drug target resistance masking in growing bacteria

Fange, David; Nilsson, Karin; Tenson, Tanel; Ehrenberg, Måns

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 8215-8220, 2009

• DOI för Drug efflux pump deficiency and drug target resistance masking in growing bacteria

Noise-induced Min phenotypes in E. coli

Fange, David; Elf, Johan

Ingår i PloS Computational Biology, s. 637-648, 2006

• DOI för Noise-induced Min phenotypes in E. coli

Modelling Approaches to Molecular Systems Biology

Fange, David

2010

• Ladda ner fulltext (pdf) av Modelling Approaches to Molecular Systems Biology

Fluctuations in replication initiation determine the generation time and size distributions of E. coli cells

Walldén, Mats; Fange, David; Gustaf, Ullman; Marklund, Erik G et al.

Transcription factor dissociation measurements using single molecule chase in living cells

Hammar, Petter; Walldén, Mats; Fange, David; Baltekin, Özden et al.

Molecular Origins of Kinetics and Selectivity in the lac operon

Lüking, Malin; Yuan, Jinwen; Larsson, Jimmy; Fange, David et al.

The LacI hinge region balances binding stability against inducibility

Yuan, Jinwen; Lüking, Malin; Zikrin, Spartak; Sen, Beer Chakra et al.

• DOI för The LacI hinge region balances binding stability against inducibility