Jennifer Meadows

Interpreting mammalian synonymous site conservation in light of the unwanted transcript hypothesis

Christmas, Matthew; Dong, Michael X.; Meadows, Jennifer R. S.; Kozyrev, Sergey V. et al.

Ingår i Nature Communications, 2025

• DOI för Interpreting mammalian synonymous site conservation in light of the unwanted transcript hypothesis
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The HLA region in ANCA-associated vasculitis: characterisation of genetic associations in a Scandinavian patient population

Lundtoft, Christian; Knight, Ann; Meadows, Jennifer; Karlsson, Åsa et al.

Ingår i RMD Open, 2024

• DOI för The HLA region in ANCA-associated vasculitis: characterisation of genetic associations in a Scandinavian patient population
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Effect of an endothelial regulatory module on plasma proteomics in exercising horses

Roudbar, Mahmoud Amiri; Rosengren, Maria K.; Mousavi, Seyedeh Fatemeh; Fegraeus, Kim et al.

Ingår i Comparative Biochemistry and Physiology - Part D, 2024

• DOI för Effect of an endothelial regulatory module on plasma proteomics in exercising horses

Characterization of Nuclear Mitochondrial Insertions in Canine Genome Assemblies

Schall, Peter Z.; Meadows, Jennifer R. S.; Ramos-Almodovar, Fabian; Kidd, Jeffrey M.

Ingår i Genes, 2024

• DOI för Characterization of Nuclear Mitochondrial Insertions in Canine Genome Assemblies
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An endothelial regulatory module links blood pressure regulation with elite athletic performance

Fegraeus, Kim; Rosengren, Maria K.; Naboulsi, Rakan; Orlando, Ludovic et al.

Ingår i PLOS Genetics, 2024

• DOI för An endothelial regulatory module links blood pressure regulation with elite athletic performance
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Interpreting mammalian synonymous site conservation in light of the unwanted transcript hypothesis

Christmas, Matthew; Dong, Michael X.; Meadows, Jennifer R. S.; Kozyrev, Sergey V. et al.

Ingår i Nature Communications, 2025

• DOI för Interpreting mammalian synonymous site conservation in light of the unwanted transcript hypothesis
• Ladda ner fulltext (pdf) av Interpreting mammalian synonymous site conservation in light of the unwanted transcript hypothesis

The HLA region in ANCA-associated vasculitis: characterisation of genetic associations in a Scandinavian patient population

Lundtoft, Christian; Knight, Ann; Meadows, Jennifer; Karlsson, Åsa et al.

Ingår i RMD Open, 2024

• DOI för The HLA region in ANCA-associated vasculitis: characterisation of genetic associations in a Scandinavian patient population
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Effect of an endothelial regulatory module on plasma proteomics in exercising horses

Roudbar, Mahmoud Amiri; Rosengren, Maria K.; Mousavi, Seyedeh Fatemeh; Fegraeus, Kim et al.

Ingår i Comparative Biochemistry and Physiology - Part D, 2024

• DOI för Effect of an endothelial regulatory module on plasma proteomics in exercising horses

Characterization of Nuclear Mitochondrial Insertions in Canine Genome Assemblies

Schall, Peter Z.; Meadows, Jennifer R. S.; Ramos-Almodovar, Fabian; Kidd, Jeffrey M.

Ingår i Genes, 2024

• DOI för Characterization of Nuclear Mitochondrial Insertions in Canine Genome Assemblies
• Ladda ner fulltext (pdf) av Characterization of Nuclear Mitochondrial Insertions in Canine Genome Assemblies

An endothelial regulatory module links blood pressure regulation with elite athletic performance

Fegraeus, Kim; Rosengren, Maria K.; Naboulsi, Rakan; Orlando, Ludovic et al.

Ingår i PLOS Genetics, 2024

• DOI för An endothelial regulatory module links blood pressure regulation with elite athletic performance
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Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs

Lingaas, Frode; Tengvall, Katarina; Jansen, Johan Hogset; Pelander, Lena et al.

Ingår i PLOS Genetics, 2023

• DOI för Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs
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Relation between HLA and copy number variation of steroid 21-hydroxylase in a Swedish cohort of patients with autoimmune Addison's disease

Lundtoft, Christian; Eriksson, Daniel; Bianchi, Matteo; Aranda-Guillen, Maribel et al.

Ingår i European Journal of Endocrinology, s. 235-241, 2023

• DOI för Relation between HLA and copy number variation of steroid 21-hydroxylase in a Swedish cohort of patients with autoimmune Addison's disease
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Leveraging base-pair mammalian constraint to understand genetic variation and human disease

Sullivan, Patrick F.; Meadows, Jennifer; Gazal, Steven; Phan, BaDoi N. et al.

Ingår i Science, s. 367-+, 2023

• DOI för Leveraging base-pair mammalian constraint to understand genetic variation and human disease

Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

Meadows, Jennifer; Kidd, Jeffrey M.; Wang, Guo-Dong; Parker, Heidi G. et al.

Ingår i Genome Biology, 2023

• DOI för Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture
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Evolutionary constraint and innovation across hundreds of placental mammals

Christmas, Matthew; Kaplow, Irene M.; Genereux, Diane P.; Dong, Michael X. et al.

Ingår i Science, 2023

• DOI för Evolutionary constraint and innovation across hundreds of placental mammals

Allele frequency spectrum of known ankylosing spondylitis associated variants in a Swedish population

Mathioudaki, Argyri; Nordin, Jessika; Kastbom, A.; Söderkvist, P. et al.

Ingår i Scandinavian Journal of Rheumatology, s. 21-24, 2022

• DOI för Allele frequency spectrum of known ankylosing spondylitis associated variants in a Swedish population
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Contribution of rare genetic variation to disease susceptibility in a large Scandinavian myositis cohort

Bianchi, Matteo; Kozyrev, Sergey V.; Notarnicola, Antonella; Hultin-Rosenberg, Lina et al.

Ingår i Arthritis & Rheumatology, s. 342-352, 2022

• DOI för Contribution of rare genetic variation to disease susceptibility in a large Scandinavian myositis cohort
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Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data

Yones, Sara A.; Annett, Alva; Stoll, Patricia; Diamanti, Klev et al.

Ingår i Scientific Reports, 2022

• DOI för Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data

Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis

Tengvall, Katarina; Sundström, Elisabeth; Wang, Chao; Bergvall, Kerstin et al.

Ingår i Communications Biology, 2022

• DOI för Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis
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Genetic and clinical basis for two distinct subtypes of primary Sjögren's syndrome

Thorlacius, Guðný Ella; Hultin-Rosenberg, Lina; Sandling, Johanna K.; Bianchi, Matteo et al.

Ingår i Rheumatology, s. 837-848, 2021

• DOI för Genetic and clinical basis for two distinct subtypes of primary Sjögren's syndrome
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The ABCC4 gene is associated with pyometra in golden retriever dogs

Arendt, Maja Louise; Ambrosen, Aime; Fall, Tove; Kierczak, Marcin et al.

Ingår i Scientific Reports, 2021

• DOI för The ABCC4 gene is associated with pyometra in golden retriever dogs
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Identification and Functional Characterization of a Novel Susceptibility Locus for Small Vessel Vasculitis with MPO-ANCA

Dahlqvist, Johanna; Ekman, Diana; Sennblad, Bengt; Kozyrev, Sergey V. et al.

Ingår i Rheumatology, s. 3461-3470, 2021

• DOI för Identification and Functional Characterization of a Novel Susceptibility Locus for Small Vessel Vasculitis with MPO-ANCA
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A novel canine reference genome resolves genomic architecture and uncovers transcript complexity

Wang, Chao; Wallerman, Ola; Arendt, Maja-Louise; Sundström, Elisabeth et al.

Ingår i Communications Biology, 2021

• DOI för A novel canine reference genome resolves genomic architecture and uncovers transcript complexity
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Association of Protective HLA-A With HLA-B∗27 Positive Ankylosing Spondylitis

Nordin, Jessika; Pettersson, Mats; Hultin Rosenberg, Lina; Mathioudaki, Argyri et al.

Ingår i Frontiers in Genetics, 2021

• DOI för Association of Protective HLA-A With HLA-B∗27 Positive Ankylosing Spondylitis
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SweHLA: the high confidence HLA typing bio-resource drawn from 1000 Swedish genomes

Nordin, Jessika; Ameur, Adam; Lindblad-Toh, Kerstin; Gyllensten, Ulf et al.

Ingår i European Journal of Human Genetics, s. 627-635, 2020

• DOI för SweHLA: the high confidence HLA typing bio-resource drawn from 1000 Swedish genomes
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A comparative genomics multitool for scientific discovery and conservation

Genereux, Diane P.; Serres, Aitor; Armstrong, Joel; Johnson, Jeremy et al.

Ingår i Nature, s. 240-245, 2020

• DOI för A comparative genomics multitool for scientific discovery and conservation
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Targeted sequencing reveals the somatic mutation landscape in a Swedish breast cancer cohort

Mathioudaki, Argyri; Ljungström, Viktor; Melin, Malin; Arendt, Maja Louise et al.

Ingår i Scientific Reports, 2020

• DOI för Targeted sequencing reveals the somatic mutation landscape in a Swedish breast cancer cohort
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SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma

Sakthikumar, Sharadha; Elvers, Ingegerd; Kim, Jaegil; Arendt, Maja Louise et al.

Ingår i Cancer Research, s. 3421-3431, 2018

• DOI för SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma

Common genetic variation in the autoimmune regulator (AIRE) locus is associated with autoimmune Addison's disease in Sweden

Eriksson, Daniel; Bianchi, Matteo; Landegren, Nils; Dalin, Frida et al.

Ingår i Scientific Reports, 2018

• DOI för Common genetic variation in the autoimmune regulator (AIRE) locus is associated with autoimmune Addison's disease in Sweden
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A potential regulatory region near the EDN3 gene may control both harness racing performance and coat color variation in horses

Fegraeus, Kim Jaederkvist; Velie, Brandon D.; Axelsson, Jeanette; Ang, Rachel et al.

Ingår i Physiological Reports, 2018

• DOI för A potential regulatory region near the EDN3 gene may control both harness racing performance and coat color variation in horses
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Absolute quantification reveals the stable transmission of a high copy number variant linked to autoinflammatory disease

Olsson, M.; Kierczak, Marcin; Karlsson, Åsa; Jablonska, Jagoda et al.

Ingår i BMC Genomics, 2016

• DOI för Absolute quantification reveals the stable transmission of a high copy number variant linked to autoinflammatory disease
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Extended exome sequencing identifies BACH2 as a novel major risk locus for Addison's disease

Eriksson, D.; Bianchi, Matteo; Landegren, Nils; Nordin, Jessika et al.

Ingår i Journal of Internal Medicine, s. 595-608, 2016

• DOI för Extended exome sequencing identifies BACH2 as a novel major risk locus for Addison's disease
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cgmisc: Enhanced Genome-wide Association Analyses and Visualisation

Kierczak, Marcin; Jablonska, Jagoda; Forsberg, S. K.; Bianchi, Matteo et al.

Ingår i Bioinformatics, s. 3830-3831, 2015

• DOI för cgmisc: Enhanced Genome-wide Association Analyses and Visualisation
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A universal genomic coordinate translator for comparative genomics

Zamani, Neda; Sundström, Görel; Meadows, Jennifer R. S.; Höppner, Marc P. et al.

Ingår i BMC Bioinformatics, s. 227, 2014

• DOI för A universal genomic coordinate translator for comparative genomics
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A Simple Repeat Polymorphism in the MITF-M Promoter Is a Key Regulator of White Spotting in Dogs

Baranowska Körberg, Izabella; Sundström, Elisabeth; Meadows, Jennifer R. S.; Pielberg, Gerli Rosengren et al.

Ingår i PLOS ONE, 2014

• DOI för A Simple Repeat Polymorphism in the MITF-M Promoter Is a Key Regulator of White Spotting in Dogs
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An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

Höppner, Marc P.; Lundquist, Andrew; Pirun, Mono; Meadows, Jennifer R. S. et al.

Ingår i PLOS ONE, 2014

• DOI för An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts
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Unsupervised genome-wide recognition of local relationship patterns

Zamani, Neda; Russell, Pamela; Lantz, Henrik; Hoeppner, Marc et al.

Ingår i BMC Genomics, s. 347, 2013

• DOI för Unsupervised genome-wide recognition of local relationship patterns
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Thorough investigation of a canine autoinflammatory disease (AID) syndrome confirms one main risk factor and suggests a modifier locus for amyloidosis

Olsson, Mia; Tintle, Linda; Kierczak, Marcin; Perloski, Michele et al.

Ingår i PLOS ONE, 2013

• DOI för Thorough investigation of a canine autoinflammatory disease (AID) syndrome confirms one main risk factor and suggests a modifier locus for amyloidosis
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The same ELA class II risk factors confer equine insect bite hypersensitivity in two distinct populations

Andersson, Lisa S.; Swinbune, June E.; Meadows, Jennifer R. S.; Brostrom, Hans et al.

Ingår i Immunogenetics, s. 201-208, 2012

• DOI för The same ELA class II risk factors confer equine insect bite hypersensitivity in two distinct populations

A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs

Olsson, Mia; Meadows, Jennifer R. S.; Truve, Katarina; Pielberg, Gerli Rosengren et al.

Ingår i PLoS Genetics, 2011

• DOI för A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs

Haplogroup relationships between domestic and wild sheep resolved using a mitogenome panel

Meadows, J R S; Hiendleder, S; Kijas, J W

Ingår i Heredity, s. 700-706, 2011

• DOI för Haplogroup relationships between domestic and wild sheep resolved using a mitogenome panel

Whole genome resequencing reveals loci under selection during chicken domestication

Rubin, Carl-Johan; Zody, Michael C.; Eriksson, Jonas; Meadows, Jennifer et al.

Ingår i Nature, s. 587-591, 2010

• DOI för Whole genome resequencing reveals loci under selection during chicken domestication

Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens

Wright, Dominic; Boije, Henrik; Meadows, Jennifer; Bed'hom, Bertrand et al.

Ingår i PLoS Genetics, 2009

• DOI för Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens

Dissecting evolution and disease using comparative vertebrate genomics

Meadows, Jennifer; Lindblad-Toh, Kerstin

Ingår i Nature reviews genetics, s. 624-636, 2017

• DOI för Dissecting evolution and disease using comparative vertebrate genomics

Supplementary material: Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data

Yones, Sara A.; Annett, Alva; Stoll, Patricia; Diamanti, Klev et al.

2021

• Ladda ner fulltext (pdf) av Supplementary material: Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data

Sheep: Domestication

Meadows, Jennifer

Ingår i Encyclopedia of Global Archaeology, s. 6597-6600, Springer, 2014

• DOI för Sheep: Domestication

The sex-stratified genetic architecture of ankylosing spondylitis

Mathioudaki, Argyri; Nordin, Jessika; Karlsson, Åsa; Murén, Eva et al.

Replication and fine mapping of ankylosing spondylitis replicated loci in the Swedish population reveal different CCHCR1 protective haplotypes

Mathioudaki, Argyri; Nordin, Jessika; Murén, Eva; Karlsson, Åsa et al.