Fredrik Pontén

A subcellular map of the human proteome

Thul, Peter J.; åkesson, Lovisa; Wiking, Mikaela; Mahdessian, Diana et al.

Ingår i Science, 2017

• DOI för A subcellular map of the human proteome

A pathology atlas of the human cancer transcriptome

Uhlen, Mathias; Zhang, Cheng; Lee, Sunjae; Sjöstedt, Evelina et al.

Ingår i Science, 2017

• DOI för A pathology atlas of the human cancer transcriptome

Expression of Human Skin-Specific Genes Defined by Transcriptomics and Antibody-Based Profiling

Edqvist, Per-Henrik D; Fagerberg, Linn; Hallström, Björn M; Danielsson, Angelika et al.

Ingår i Journal of Histochemistry and Cytochemistry, s. 129-141, 2015

• DOI för Expression of Human Skin-Specific Genes Defined by Transcriptomics and Antibody-Based Profiling

Tissue-based map of the human proteome

Uhlen, Mathias; Fagerberg, Linn; Hallstroem, Bjoern M.; Lindskog, Cecilia et al.

Ingår i Science, s. 394-+, 2015

• DOI för Tissue-based map of the human proteome

A systematic analysis of commonly used antibodies in cancer diagnostics

Gremel, Gabriela; Bergman, Julia; Djureinovic, Dijana; Edqvist, Per-Henrik et al.

Ingår i Histopathology, s. 293-305, 2014

• DOI för A systematic analysis of commonly used antibodies in cancer diagnostics

The Human Protein Atlas as a proteomic resource for biomarker discovery

Pontén, Fredrik; Schwenk, J. M.; Asplund, Anna; Edqvist, Per-Henrik D.

Ingår i Journal of Internal Medicine, s. 428-446, 2011

• DOI för The Human Protein Atlas as a proteomic resource for biomarker discovery

Prognostic genome and transcriptome signatures in colorectal cancers

Nunes, Luís; Li, Fuqiang; Wu, Meizhen; Luo, Tian et al.

Ingår i Nature, s. 137-146, 2024

• DOI för Prognostic genome and transcriptome signatures in colorectal cancers

Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors

Jotanovic, Jelena; Tebani, Abdellah; Hekmati, Neda; Sivertsson, Åsa et al.

Ingår i Journal of the Endocrine Society, 2024

• DOI för Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors
• Ladda ner fulltext (pdf) av Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors

The impact of sex on treatment and outcome in relation to histological subtype in patients with resectable gastric cancer: Results from the randomized CRITICS trial

Caspers, Irene A.; Slagter, Astrid E.; Lind, Pehr; Sikorska, Karolina et al.

Ingår i Journal of Surgical Oncology, s. 734-744, 2024

• DOI för The impact of sex on treatment and outcome in relation to histological subtype in patients with resectable gastric cancer: Results from the randomized CRITICS trial

CD93 maintains endothelial barrier function and limits metastatic dissemination

Vemuri, Kalyani; de Alves Pereira, Beatriz; Fuenzalida, Patricia; Subashi, Yelin et al.

Ingår i JCI Insight, 2024

• DOI för CD93 maintains endothelial barrier function and limits metastatic dissemination
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A human stomach cell type transcriptome atlas

Öling, S.; Struck, E.; Noreen-Thorsen, M.; Zwahlen, M. et al.

Ingår i BMC Biology, 2024

• DOI för A human stomach cell type transcriptome atlas
• Ladda ner fulltext (pdf) av A human stomach cell type transcriptome atlas

Prognostic genome and transcriptome signatures in colorectal cancers

Nunes, Luís; Li, Fuqiang; Wu, Meizhen; Luo, Tian et al.

Ingår i Nature, s. 137-146, 2024

• DOI för Prognostic genome and transcriptome signatures in colorectal cancers

Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors

Jotanovic, Jelena; Tebani, Abdellah; Hekmati, Neda; Sivertsson, Åsa et al.

Ingår i Journal of the Endocrine Society, 2024

• DOI för Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors
• Ladda ner fulltext (pdf) av Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors

The impact of sex on treatment and outcome in relation to histological subtype in patients with resectable gastric cancer: Results from the randomized CRITICS trial

Caspers, Irene A.; Slagter, Astrid E.; Lind, Pehr; Sikorska, Karolina et al.

Ingår i Journal of Surgical Oncology, s. 734-744, 2024

• DOI för The impact of sex on treatment and outcome in relation to histological subtype in patients with resectable gastric cancer: Results from the randomized CRITICS trial

CD93 maintains endothelial barrier function and limits metastatic dissemination

Vemuri, Kalyani; de Alves Pereira, Beatriz; Fuenzalida, Patricia; Subashi, Yelin et al.

Ingår i JCI Insight, 2024

• DOI för CD93 maintains endothelial barrier function and limits metastatic dissemination
• Ladda ner fulltext (pdf) av CD93 maintains endothelial barrier function and limits metastatic dissemination

A human stomach cell type transcriptome atlas

Öling, S.; Struck, E.; Noreen-Thorsen, M.; Zwahlen, M. et al.

Ingår i BMC Biology, 2024

• DOI för A human stomach cell type transcriptome atlas
• Ladda ner fulltext (pdf) av A human stomach cell type transcriptome atlas

Effect of preoperative chemotherapy on the histopathological classification of gastric cancer

Caspers, I. A.; Biesma, H. D.; Wiklund, K.; Pontén, Fredrik et al.

Ingår i Gastric Cancer, s. 102-109, 2024

• DOI för Effect of preoperative chemotherapy on the histopathological classification of gastric cancer
• Ladda ner fulltext (pdf) av Effect of preoperative chemotherapy on the histopathological classification of gastric cancer

Imaging of fibrogenesis in the liver by [¹⁸F]TZ-Z09591, an Affibody molecule targeting platelet derived growth factor receptor β

Wegrzyniak, Olivia; Zhang, Bo; Rokka, Johanna; Rosestedt, Maria et al.

Ingår i EJNMMI Radiopharmacy and Chemistry, 2023

• DOI för Imaging of fibrogenesis in the liver by [¹⁸F]TZ-Z09591, an Affibody molecule targeting platelet derived growth factor receptor β
• Ladda ner fulltext (pdf) av Imaging of fibrogenesis in the liver by [¹⁸F]TZ-Z09591, an Affibody molecule targeting platelet derived growth factor receptor β

Spatial immunophenotyping of the tumour microenvironment in non-small cell lung cancer

Backman, Max; Strell, Carina; Lindberg, Amanda; Mattsson, Johanna S. M. et al.

Ingår i European Journal of Cancer, s. 40-52, 2023

• DOI för Spatial immunophenotyping of the tumour microenvironment in non-small cell lung cancer
• Ladda ner fulltext (pdf) av Spatial immunophenotyping of the tumour microenvironment in non-small cell lung cancer

Absolute Quantification of Pan-Cancer Plasma Proteomes Reveals Unique Signature in Multiple Myeloma

Kotol, David; Woessmann, Jakob; Hober, Andreas; Alvez, Maria Bueno et al.

Ingår i Cancers, 2023

• DOI för Absolute Quantification of Pan-Cancer Plasma Proteomes Reveals Unique Signature in Multiple Myeloma
• Ladda ner fulltext (pdf) av Absolute Quantification of Pan-Cancer Plasma Proteomes Reveals Unique Signature in Multiple Myeloma

Next generation pan-cancer blood proteome profiling using proximity extension assay

Alvez, Maria Bueno; Edfors, Fredrik; von Feilitzen, Kalle; Zwahlen, Martin et al.

Ingår i Nature Communications, 2023

• DOI för Next generation pan-cancer blood proteome profiling using proximity extension assay
• Ladda ner fulltext (pdf) av Next generation pan-cancer blood proteome profiling using proximity extension assay

An immune score reflecting pro- and anti-tumoural balance of tumour microenvironment has major prognostic impact and predicts immunotherapy response in solid cancers

Mezheyeuski, Artur; Backman, Max; Mattsson, Johanna Sofia Margareta; Martin-Bernabe, Alfonso et al.

Ingår i EBioMedicine, 2023

• DOI för An immune score reflecting pro- and anti-tumoural balance of tumour microenvironment has major prognostic impact and predicts immunotherapy response in solid cancers
• Ladda ner fulltext (pdf) av An immune score reflecting pro- and anti-tumoural balance of tumour microenvironment has major prognostic impact and predicts immunotherapy response in solid cancers

Combined expression of HOXA11 and CD10 identifies endometriosis versus normal tissue and tumors

Bergman-Larsson, Julia; Gustafsson, Sofie; Méar, Loren; Huvila, Jutta et al.

Ingår i Annals of Diagnostic Pathology, 2022

• DOI för Combined expression of HOXA11 and CD10 identifies endometriosis versus normal tissue and tumors
• Ladda ner fulltext (pdf) av Combined expression of HOXA11 and CD10 identifies endometriosis versus normal tissue and tumors

Genome-wide annotation of protein-coding genes in pig

Karlsson, Max; Sjöstedt, Evelina; Oksvold, Per; Sivertsson, Asa et al.

Ingår i BMC Biology, 2022

• DOI för Genome-wide annotation of protein-coding genes in pig
• Ladda ner fulltext (pdf) av Genome-wide annotation of protein-coding genes in pig

A human adipose tissue cell-type transcriptome atlas

Norreen-Thorsen, Marthe; Struck, Eike Christopher; Oling, Sofia; Zwahlen, Martin et al.

Ingår i Cell Reports, 2022

• DOI för A human adipose tissue cell-type transcriptome atlas
• Ladda ner fulltext (pdf) av A human adipose tissue cell-type transcriptome atlas

Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level

Wang, Fei; Ding, Peiwen; Liang, Xue; Ding, Xiangning et al.

Ingår i Nature Communications, 2022

• DOI för Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level
• Ladda ner fulltext (pdf) av Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level

Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer

Backman, Max; La Fleur, Linnea; Kurppa, Pinja; Djureinovic, Dijana et al.

Ingår i Journal of Pathology, s. 243-256, 2021

• DOI för Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer
• Ladda ner fulltext (pdf) av Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer

A single-cell type transcriptomics map of human tissues

Karlsson, Max; Zhang, Cheng; Méar, Loren; Zhong, Wen et al.

Ingår i Science Advances, 2021

• DOI för A single-cell type transcriptomics map of human tissues
• Ladda ner fulltext (pdf) av A single-cell type transcriptomics map of human tissues

ELTD1-deletion reduces vascular abnormality and improves T-cell recruitment after PD-1 blockade in glioma.

Huang, Hua; Georganaki, Maria; Conze, Lei Liu; Laviña, Bàrbara et al.

Ingår i Neuro-Oncology, s. 398-411, 2021

• DOI för ELTD1-deletion reduces vascular abnormality and improves T-cell recruitment after PD-1 blockade in glioma.
• Ladda ner fulltext (pdf) av ELTD1-deletion reduces vascular abnormality and improves T-cell recruitment after PD-1 blockade in glioma.

The noncoding MIR100HG RNA enhances the autocrine function of transforming growth factor beta signaling

Papoutsoglou, Panagiotis; Rodrigues Junior, Dorival Mendes; Morén, Anita; Bergman, Andrew et al.

Ingår i Oncogene, s. 3748-3765, 2021

• DOI för The noncoding MIR100HG RNA enhances the autocrine function of transforming growth factor beta signaling
• Ladda ner fulltext (pdf) av The noncoding MIR100HG RNA enhances the autocrine function of transforming growth factor beta signaling

Spatiotemporal dissection of the cell cycle with single-cell proteogenomics

Mahdessian, Diana; Cesnik, Anthony J.; Gnann, Christian; Danielsson, Frida et al.

Ingår i Nature, s. 649-654, 2021

• DOI för Spatiotemporal dissection of the cell cycle with single-cell proteogenomics

The prognostic impact of the tumour stroma fraction: A machine learning-based analysis in 16 human solid tumour types

Micke, Patrick; Strell, Carina; Mattsson, Johanna Sofia Margareta; Martin-Bernabe, Alfonso et al.

Ingår i EBioMedicine, 2021

• DOI för The prognostic impact of the tumour stroma fraction: A machine learning-based analysis in 16 human solid tumour types
• Ladda ner fulltext (pdf) av The prognostic impact of the tumour stroma fraction: A machine learning-based analysis in 16 human solid tumour types

Annotation of pituitary neuroendocrine tumors with genome-wide expression analysis

Tebani, Abdellah; Jotanovic, Jelena; Hekmati, Neda; Sivertsson, Åsa et al.

Ingår i Acta neuropathologica communications, 2021

• DOI för Annotation of pituitary neuroendocrine tumors with genome-wide expression analysis

The Immune Landscape of Colorectal Cancer

Mezheyeuski, Artur; Micke, Patrick; Martin-Bernabe, Alfonso; Backman, Max et al.

Ingår i Cancers, 2021

• DOI för The Immune Landscape of Colorectal Cancer
• Ladda ner fulltext (pdf) av The Immune Landscape of Colorectal Cancer

Molecular characterization of a large unselected cohort of metastatic colorectal cancers in relation to primary tumor location, rare metastatic sites and prognosis

Nunes, Luís; Aasebø, Kristine; Mathot, Lucy; Ljungström, Viktor et al.

Ingår i Acta Oncologica, s. 417-426, 2020

• DOI för Molecular characterization of a large unselected cohort of metastatic colorectal cancers in relation to primary tumor location, rare metastatic sites and prognosis
• Ladda ner fulltext (pdf) av Molecular characterization of a large unselected cohort of metastatic colorectal cancers in relation to primary tumor location, rare metastatic sites and prognosis

An atlas of the protein-coding genes in the human, pig, and mouse brain

Sjostedt, Evelina; Zhong, Wen; Fagerberg, Linn; Karlsson, Max et al.

Ingår i Science, s. 1090-+, 2020

• DOI för An atlas of the protein-coding genes in the human, pig, and mouse brain

CDX2: A Prognostic Marker in Metastatic Colorectal Cancer Defining a Better BRAF Mutated and a Worse KRAS Mutated Subgroup

Aasebo, Kristine; Dragomir, Anca; Sundström, Magnus; Mezheyeuski, Artur et al.

Ingår i Frontiers in Oncology, 2020

• DOI för CDX2: A Prognostic Marker in Metastatic Colorectal Cancer Defining a Better BRAF Mutated and a Worse KRAS Mutated Subgroup
• Ladda ner fulltext (pdf) av CDX2: A Prognostic Marker in Metastatic Colorectal Cancer Defining a Better BRAF Mutated and a Worse KRAS Mutated Subgroup

Metastatic colorectal carcinomas with high SATB2 expression are associated with better prognosis and response to chemotherapy: a population-based Scandinavian study

Mezheyeuski, Artur; Pontén, Fredrik; Edqvist, Per-Henrik D; Sundström, Magnus et al.

Ingår i Acta Oncologica, s. 284-290, 2020

• DOI för Metastatic colorectal carcinomas with high SATB2 expression are associated with better prognosis and response to chemotherapy: a population-based Scandinavian study
• Ladda ner fulltext (pdf) av Metastatic colorectal carcinomas with high SATB2 expression are associated with better prognosis and response to chemotherapy: a population-based Scandinavian study

Proximity Ligation Assay as a Tool for Antibody Validation in Human Tissues

Lindskog, Cecilia; Backman, Max; Zieba, Agata; Asplund, Anna et al.

Ingår i Journal of Histochemistry and Cytochemistry, s. 515-529, 2020

• DOI för Proximity Ligation Assay as a Tool for Antibody Validation in Human Tissues

Blood-derived biomarkers correlate with clinical progression in Duchenne muscular dystrophy

Strandberg, Kristin; Ayoglu, Burcu; Roos, Andreas; Reza, Mojgan et al.

Ingår i JOURNAL OF NEUROMUSCULAR DISEASES, s. 231-246, 2020

• DOI för Blood-derived biomarkers correlate with clinical progression in Duchenne muscular dystrophy
• Ladda ner fulltext (pdf) av Blood-derived biomarkers correlate with clinical progression in Duchenne muscular dystrophy

The human secretome

Uhlen, Mathias; Karlsson, Max J.; Hober, Andreas; Svensson, Anne-Sophie et al.

Ingår i Science Signaling, 2019

• DOI för The human secretome

A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

Wang, Dongxue; Eraslan, Basak; Wieland, Thomas; Hallstrom, Bjorn et al.

Ingår i Molecular Systems Biology, 2019

• DOI för A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
• Ladda ner fulltext (pdf) av A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

Quantification and discovery of sequence determinants of protein-per-mRNA amount in 29 human tissues

Eraslan, Basak; Wang, Dongxue; Gusic, Mirjana; Prokisch, Holger et al.

Ingår i Molecular Systems Biology, 2019

• DOI för Quantification and discovery of sequence determinants of protein-per-mRNA amount in 29 human tissues
• Ladda ner fulltext (pdf) av Quantification and discovery of sequence determinants of protein-per-mRNA amount in 29 human tissues

Consequences of a high incidence of microsatellite instability and BRAF-mutated tumors: A population-based cohort of metastatic colorectal cancer patients

Aasebö, Kristine Ö.; Dragomir, Anca; Sundström, Magnus; Mezheyeuski, Artur et al.

Ingår i Cancer Medicine, s. 3623-3635, 2019

• DOI för Consequences of a high incidence of microsatellite instability and BRAF-mutated tumors: A population-based cohort of metastatic colorectal cancer patients
• Ladda ner fulltext (pdf) av Consequences of a high incidence of microsatellite instability and BRAF-mutated tumors: A population-based cohort of metastatic colorectal cancer patients

Tumoral pyruvate kinase L/R as a predictive marker for the treatment of renal cancer patients with sunitinib and sorafenib

Niinivirta, Marjut; Enblad, Gunilla; Lindskog, Cecilia; Pontén, Fredrik et al.

Ingår i Journal of Cancer, s. 3224-3231, 2019

• DOI för Tumoral pyruvate kinase L/R as a predictive marker for the treatment of renal cancer patients with sunitinib and sorafenib
• Ladda ner fulltext (pdf) av Tumoral pyruvate kinase L/R as a predictive marker for the treatment of renal cancer patients with sunitinib and sorafenib

Systematic assessment of antibody selectivity in plasma based on a resource of enrichment profiles

Fredolini, Claudia; Byström, Sanna; Sanchez-Rivera, Laura; Ioannou, Marina et al.

Ingår i Scientific Reports, 2019

• DOI för Systematic assessment of antibody selectivity in plasma based on a resource of enrichment profiles
• Ladda ner fulltext (pdf) av Systematic assessment of antibody selectivity in plasma based on a resource of enrichment profiles

A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

Uhlen, Mathias; Karlsson, Max J.; Zhong, Wen; Tebani, Abdellah et al.

Ingår i Science, s. 1471-+, 2019

• DOI för A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer

Cadenas, Cristina; Vosbeck, Sonja; Edlund, Karolina; Grgas, Katharina et al.

Ingår i International Journal of Cancer, s. 901-915, 2019

• DOI för LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer
• Ladda ner fulltext (pdf) av LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer

Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC

Edlund, Karolina; Madjar, Katrin; Mattsson, Johanna Sofia Margareta; Djureinovic, Dijana et al.

Ingår i Journal of Thoracic Oncology, s. 628-640, 2019

• DOI för Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC
• Ladda ner fulltext (pdf) av Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC

Stroma-normalised vessel density predicts benefit from adjuvant fluorouracil-based chemotherapy in patients with stage II/III colon cancer

Mezheyeuski, Artur; Hrynchyk, Ina; Herrera, Mercedes; Karlberg, Mia et al.

Ingår i British Journal of Cancer, s. 303-311, 2019

• DOI för Stroma-normalised vessel density predicts benefit from adjuvant fluorouracil-based chemotherapy in patients with stage II/III colon cancer

Mining the Human Tissue Proteome for Protein Citrullination

Lee, Chien-Yun; Wang, Dongxue; Wilhelm, Mathias; Zolg, Daniel P. et al.

Ingår i Molecular & Cellular Proteomics, s. 1378-1391, 2018

• DOI för Mining the Human Tissue Proteome for Protein Citrullination

U-CAN: a prospective longitudinal collection of biomaterials and clinical information from adult cancer patients in Sweden.

Glimelius, Bengt; Melin, Beatrice; Enblad, Gunilla; Alafuzoff, Irina et al.

Ingår i Acta Oncologica, s. 187-194, 2018

• DOI för U-CAN: a prospective longitudinal collection of biomaterials and clinical information from adult cancer patients in Sweden.
• Ladda ner fulltext (pdf) av U-CAN: a prospective longitudinal collection of biomaterials and clinical information from adult cancer patients in Sweden.

Combined ASRGL1 and p53 immunohistochemistry as an independent predictor of survival in endometrioid endometrial carcinoma

Huvila, Jutta; Laajala, Teemu D.; Edqvist, Per-Henrik D; Mardinoglu, Adil et al.

Ingår i Gynecologic Oncology, s. 173-180, 2018

• DOI för Combined ASRGL1 and p53 immunohistochemistry as an independent predictor of survival in endometrioid endometrial carcinoma

Novel Multiomics Profiling of Human Carotid Atherosclerotic Plaques and Plasma Reveals Biliverdin Reductase B as a Marker of Intraplaque Hemorrhage

Matic, Ljubica Perisic; Iglesias, Maria Jesus; Vesterlund, Mattias; Lengquist, Mariette et al.

Ingår i JACC-BASIC TO TRANSLATIONAL SCIENCE, s. 464-480, 2018

• DOI för Novel Multiomics Profiling of Human Carotid Atherosclerotic Plaques and Plasma Reveals Biliverdin Reductase B as a Marker of Intraplaque Hemorrhage
• Ladda ner fulltext (pdf) av Novel Multiomics Profiling of Human Carotid Atherosclerotic Plaques and Plasma Reveals Biliverdin Reductase B as a Marker of Intraplaque Hemorrhage

Immunohistochemistry for transcription factor T-Pit as a tool in diagnostics of corticotroph pituitary tumours

Casar Borota, Olivera; Bollerslev, Jens; Pontén, Fredrik

Ingår i Pituitary, s. 443-443, 2018

• DOI för Immunohistochemistry for transcription factor T-Pit as a tool in diagnostics of corticotroph pituitary tumours

Detection of autoantibodies against cancer-testis antigens in non-small cell lung cancer

Djureinovic, Dijana; Dodig-Crnkovic, Tea; Hellström, Cecilia; Holgersson, Georg et al.

Ingår i Lung Cancer, s. 157-163, 2018

• DOI för Detection of autoantibodies against cancer-testis antigens in non-small cell lung cancer

In situ protein detection with enhanced specificity using DNA-conjugated antibodies and proximity ligation

Zieba, Agata; Ponten, Fredrik; Uhlen, Mathias; Landegren, Ulf

Ingår i Modern Pathology, s. 253-263, 2018

• DOI för In situ protein detection with enhanced specificity using DNA-conjugated antibodies and proximity ligation

Reaching the limits of prognostication in non-small cell lung cancer: an optimized biomarker panel fails to outperform clinical parameters.

Grinberg, Marianna; Djureinovic, Dijana; Brunnström, Hans R R; Mattsson, Johanna Sofia Margareta et al.

Ingår i Modern Pathology, s. 964-977, 2017

• DOI för Reaching the limits of prognostication in non-small cell lung cancer: an optimized biomarker panel fails to outperform clinical parameters.

A systematic search strategy identifies cubilin as independent prognostic marker for renal cell carcinoma

Gremel, Gabriela; Djureinovic, Dijana; Niinivirta, Marjut; Laird, Alexander et al.

Ingår i BMC Cancer, 2017

• DOI för A systematic search strategy identifies cubilin as independent prognostic marker for renal cell carcinoma
• Ladda ner fulltext (pdf) av A systematic search strategy identifies cubilin as independent prognostic marker for renal cell carcinoma

Mast Cell Infiltration in Human Brain Metastases Modulates the Microenvironment and Contributes to the Metastatic Potential

Roy, Ananya; Libard, Sylwia; Weishaupt, Holger; Gustavsson, Ida et al.

Ingår i Frontiers in Oncology, 2017

• DOI för Mast Cell Infiltration in Human Brain Metastases Modulates the Microenvironment and Contributes to the Metastatic Potential
• Ladda ner fulltext (pdf) av Mast Cell Infiltration in Human Brain Metastases Modulates the Microenvironment and Contributes to the Metastatic Potential

Serglycin as a potential biomarker for glioma: association of serglycin expression, extent of mast cell recruitment and glioblastoma progression

Roy, Ananya; Attarha, Sanaz; Weishaupt, Holger; Edqvist, Per-Henrik et al.

Ingår i Oncotarget, s. 24815-24827, 2017

• DOI för Serglycin as a potential biomarker for glioma: association of serglycin expression, extent of mast cell recruitment and glioblastoma progression
• Ladda ner fulltext (pdf) av Serglycin as a potential biomarker for glioma: association of serglycin expression, extent of mast cell recruitment and glioblastoma progression

Tumoral ANXA1 Is a Predictive Marker for Sunitinib Treatment of Renal Cancer Patients

Niinivirta, Marjut; Enblad, Gunilla; Edqvist, Per-Henrik D; Pontén, Fredrik et al.

Ingår i Journal of Cancer, s. 3975-3983, 2017

• DOI för Tumoral ANXA1 Is a Predictive Marker for Sunitinib Treatment of Renal Cancer Patients
• Ladda ner fulltext (pdf) av Tumoral ANXA1 Is a Predictive Marker for Sunitinib Treatment of Renal Cancer Patients

A specific antibody to detect transcription factor T-Pit: a reliable marker of corticotroph cell differentiation and a tool to improve the classification of pituitary neuroendocrine tumours

Sjöstedt, Evelina; Bollerslev, Jens; Mulder, Jan; Lindskog, Cecilia et al.

Ingår i Acta Neuropathologica, s. 675-677, 2017

• DOI för A specific antibody to detect transcription factor T-Pit: a reliable marker of corticotroph cell differentiation and a tool to improve the classification of pituitary neuroendocrine tumours

A subcellular map of the human proteome

Thul, Peter J.; åkesson, Lovisa; Wiking, Mikaela; Mahdessian, Diana et al.

Ingår i Science, 2017

• DOI för A subcellular map of the human proteome

High RBM3 expression is associated with an improved survival and oxaliplatin response in patients with metastatic colorectal cancer

Siesing, Christina; Sorbye, Halfdan; Dragomir, Anca; Pfeiffer, Per et al.

Ingår i PLOS ONE, 2017

• DOI för High RBM3 expression is associated with an improved survival and oxaliplatin response in patients with metastatic colorectal cancer
• Ladda ner fulltext (pdf) av High RBM3 expression is associated with an improved survival and oxaliplatin response in patients with metastatic colorectal cancer

Tumoral cubilin is a predictive marker for treatment of renal cancer patients with sunitinib and sorafenib

Niinivirta, Marjut; Enblad, Gunilla; Edqvist, Per-Henrik; Pontén, Fredrik et al.

Ingår i Journal of Cancer Research and Clinical Oncology, s. 961-970, 2017

• DOI för Tumoral cubilin is a predictive marker for treatment of renal cancer patients with sunitinib and sorafenib
• Ladda ner fulltext (pdf) av Tumoral cubilin is a predictive marker for treatment of renal cancer patients with sunitinib and sorafenib

The human adrenal gland proteome defined by transcriptomics and antibody-based profiling

Bergman, Julia; Botling, Johan; Fagerberg, Linn; Hallström, Björn M. et al.

Ingår i Endocrinology, s. 239-251, 2017

• DOI för The human adrenal gland proteome defined by transcriptomics and antibody-based profiling

Serotonin, ATRX, and DAXX Expression in Pituitary Adenomas: Markers in the Differential Diagnosis of Neuroendocrine Tumors of the Sellar Region.

Casar Borota, Olivera; Botling, Johan; Granberg, Dan; Stigare, Jerker et al.

Ingår i American Journal of Surgical Pathology, s. 1238-1246, 2017

• DOI för Serotonin, ATRX, and DAXX Expression in Pituitary Adenomas: Markers in the Differential Diagnosis of Neuroendocrine Tumors of the Sellar Region.

A pathology atlas of the human cancer transcriptome

Uhlen, Mathias; Zhang, Cheng; Lee, Sunjae; Sjöstedt, Evelina et al.

Ingår i Science, 2017

• DOI för A pathology atlas of the human cancer transcriptome

A nonsense mutation in CEP55 defines a new locus for a Meckel-like syndrome, an autosomal recessive lethal fetal ciliopathy.

Bondeson, Marie-Louise; Ericson, Katharina; Gudmundsson, Sanna; Ameur, Adam et al.

Ingår i Clinical Genetics, s. 510-516, 2017

• DOI för A nonsense mutation in CEP55 defines a new locus for a Meckel-like syndrome, an autosomal recessive lethal fetal ciliopathy.

Principles of Systems Biology, No. 21: Editorial

Cao, Junyue; Packer, Jonathan; Waterston, Robert; Trapnell, Cole et al.

Ingår i CELL SYSTEMS, s. 158-160, 2017

• DOI för Principles of Systems Biology, No. 21: Editorial

Cetuximab sensitivity of head and neck squamous cell carcinoma xenografts is associated with treatment-induced reduction in EGFR, pEGFR, and pSrc.

Jedlinski, Adam; Garvin, Stina; Johansson, Ann-Charlotte; Edqvist, Per-Henrik D et al.

Ingår i Journal of Oral Pathology & Medicine, s. 717-724, 2017

• DOI för Cetuximab sensitivity of head and neck squamous cell carcinoma xenografts is associated with treatment-induced reduction in EGFR, pEGFR, and pSrc.

Breast cancer in young women and prognosis: How important are proliferation markers?

Fredholm, Hanna; Magnusson, Kristina; Lindstrom, Linda S.; Tobin, Nicholas P. et al.

Ingår i European Journal of Cancer, s. 278-289, 2017

• DOI för Breast cancer in young women and prognosis: How important are proliferation markers?

Affinity Proteomics Exploration of Melanoma Identifies Proteins in Serum with Associations to T-Stage and Recurrence

Byström, Sanna; Fredolini, Claudia; Edqvist, Per-Henrik D; Nyaiesh, Etienne-Nicholas et al.

Ingår i Translational Oncology, s. 385-395, 2017

• DOI för Affinity Proteomics Exploration of Melanoma Identifies Proteins in Serum with Associations to T-Stage and Recurrence

A stromal cell population in the large intestine identified by tissue factor expression that is lost during colorectal cancer progression

Eriksson, Oskar; Asplund, Anna; Hegde, Geeta; Edqvist, Per-Henrik D et al.

Ingår i Thrombosis and Haemostasis, s. 1050-1059, 2016

• DOI för A stromal cell population in the large intestine identified by tissue factor expression that is lost during colorectal cancer progression

Inconsistent results in the analysis of ALK rearrangements in non-small cell lung cancer

Mattsson, Johanna Sofia Margareta; Brunnström, Hans; Jabs, Verena; Edlund, Karolina et al.

Ingår i BMC Cancer, 2016

• DOI för Inconsistent results in the analysis of ALK rearrangements in non-small cell lung cancer
• Ladda ner fulltext (pdf) av Inconsistent results in the analysis of ALK rearrangements in non-small cell lung cancer

ANLN is a prognostic biomarker independent of Ki-67 and essential for cell cycle progression in primary breast cancer

Magnusson, Kristina; Gremel, Gabriela; Rydén, Lisa; Pontén, Victor et al.

Ingår i BMC Cancer, 2016

• DOI för ANLN is a prognostic biomarker independent of Ki-67 and essential for cell cycle progression in primary breast cancer
• Ladda ner fulltext (pdf) av ANLN is a prognostic biomarker independent of Ki-67 and essential for cell cycle progression in primary breast cancer

PROX1 is a novel pathway-specific prognostic biomarker for high-grade astrocytomas; results from independent glioblastoma cohorts stratified by age and IDH mutation status.

Roodakker, Kenney R.; Elsir, Tamador; Edqvist, Per-Henrik D; Hägerstrand, Daniel et al.

Ingår i Oncotarget, s. 72431-72442, 2016

• DOI för PROX1 is a novel pathway-specific prognostic biomarker for high-grade astrocytomas; results from independent glioblastoma cohorts stratified by age and IDH mutation status.
• Ladda ner fulltext (pdf) av PROX1 is a novel pathway-specific prognostic biomarker for high-grade astrocytomas; results from independent glioblastoma cohorts stratified by age and IDH mutation status.

Survival-associated heterogeneity of marker-defined perivascular cells in colorectal cancer

Mezheyeuski, Artur; Lindh, Maja Bradic; Guren, Tormod Kyrre; Dragomir, Anca et al.

Ingår i Oncotarget, s. 41948-41958, 2016

• DOI för Survival-associated heterogeneity of marker-defined perivascular cells in colorectal cancer

GPR44 is a pancreatic protein restricted to the human beta cell

Hellström-Lindahl, Ewa; Danielsson, Angelika; Pontén, Fredrik; Czernichow, Paul et al.

Ingår i Acta Diabetologica, s. 413-421, 2016

• DOI för GPR44 is a pancreatic protein restricted to the human beta cell

SATB2 is expressed in Merkel cell carcinoma

Fukuhara, Mari; Agnarsdottir, Margret; Edqvist, Per-Henrik; Coter, Anna et al.

Ingår i Archives of Dermatological Research, s. 449-454, 2016

• DOI för SATB2 is expressed in Merkel cell carcinoma

Long-term outcome in young women with breast cancer: a population-based study

Fredholm, Hanna; Magnusson, Kristina; Lindström, Linda S.; Garmo, Hans et al.

Ingår i Breast Cancer Research and Treatment, s. 131-143, 2016

• DOI för Long-term outcome in young women with breast cancer: a population-based study
• Ladda ner fulltext (pdf) av Long-term outcome in young women with breast cancer: a population-based study

Guidance Molecule SEMA3A Restricts Tumor Growth by Differentially Regulating the Proliferation of Tumor-Associated Macrophages

Wallerius, Majken; Wallmann, Tatjana; Bartish, Margarita; Ostling, Jeanette et al.

Ingår i Cancer Research, s. 3166-3178, 2016

• DOI för Guidance Molecule SEMA3A Restricts Tumor Growth by Differentially Regulating the Proliferation of Tumor-Associated Macrophages

Profiling cancer testis antigens in non-small-cell lung cancer

Djureinovic, Dijana; Hallström, Bjorn M.; Horie, Masafumi; Mattsson, Johanna Sofia Margareta et al.

Ingår i JCI INSIGHT, 2016

• DOI för Profiling cancer testis antigens in non-small-cell lung cancer

Extension of diffuse low-grade gliomas beyond radiological borders as shown by the coregistration of histopathological and magnetic resonance imaging data

Zetterling, Maria; Roodakker, Kenney Roy; Berntsson, Shala Ghaderi; Edqvist, Per-Henrik D et al.

Ingår i Journal of Neurosurgery, s. 1155-1166, 2016

• DOI för Extension of diffuse low-grade gliomas beyond radiological borders as shown by the coregistration of histopathological and magnetic resonance imaging data

The protein phosphatase 2A regulatory subunit PR70 is a gonosomal melanoma tumor suppressor gene

van Kempen, Leon C. L.; Redpath, Margaret; Elchebly, Mounib; Klein, Kathleen Oros et al.

Ingår i Science Translational Medicine, 2016

• DOI för The protein phosphatase 2A regulatory subunit PR70 is a gonosomal melanoma tumor suppressor gene

System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis

Pozniak, Yair; Balint-Lahat, Nora; Rudolph, Jan Daniel; Lindskog, Cecilia et al.

Ingår i CELL SYSTEMS, s. 172-184, 2016

• DOI för System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis

Analysis of Body-wide Unfractionated Tissue Data to Identify a Core Human Endothelial Transcriptome.

Butler, Lynn Marie; Hallström, Björn Mikael; Fagerberg, Linn; Pontén, Fredrik C et al.

Ingår i Cell systems, s. 287-301000, 2016

• DOI för Analysis of Body-wide Unfractionated Tissue Data to Identify a Core Human Endothelial Transcriptome.

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

Stahl, Patrik L.; Salmen, Fredrik; Vickovic, Sanja; Lundmark, Anna et al.

Ingår i Science, s. 78-82, 2016

• DOI för Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

Oncogene-Induced Senescence in Pituitary Adenomas-an Immunohistochemical Study.

Manojlovic-Gacic, Emilija; Skender-Gazibara, Milica; Popovic, Vera; Soldatovic, Ivan et al.

Ingår i Endocrine pathology, s. 1-11, 2016

• DOI för Oncogene-Induced Senescence in Pituitary Adenomas-an Immunohistochemical Study.

Gene-specific correlation of RNA and protein levels in human cells and tissues

Edfors, Fredrik; Danielsson, Frida; Hallström, Björn M.; Käll, Lukas et al.

Ingår i Molecular Systems Biology, 2016

• DOI för Gene-specific correlation of RNA and protein levels in human cells and tissues
• Ladda ner fulltext (pdf) av Gene-specific correlation of RNA and protein levels in human cells and tissues

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium

Yu, Nancy Yiu-Lin; Hallstrom, Bjorn M.; Fagerberg, Linn; Pontén, Fredrik et al.

Ingår i Nucleic Acids Research, s. 6787-6798, 2015

• DOI för Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium
• Ladda ner fulltext (pdf) av Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium

The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling

Habuka, Masato; Fagerberg, Linn; Hallström, Björn M.; Pontén, Fredrik et al.

Ingår i PLOS ONE, 2015

• DOI för The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling
• Ladda ner fulltext (pdf) av The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling

A Tissue-Based Map of the Human Proteome

Pontén, Fredrik

Ingår i Scandinavian Journal of Immunology, s. 329-329, 2015

Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex

Sjöstedt, Evelina; Fagerberg, Linn; Hallstrom, Bjorn M.; Haggmark, Anna et al.

Ingår i PLOS ONE, 2015

• DOI för Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex
• Ladda ner fulltext (pdf) av Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex

Loss of ASRGL1 expression is an independent biomarker for disease-specific survival in endometrioid endometrial carcinoma

Edqvist, Per-Henrik D.; Huvila, Jutta; Forsstrom, Bjorn; Talve, Lauri et al.

Ingår i Gynecologic Oncology, s. 529-537, 2015

• DOI för Loss of ASRGL1 expression is an independent biomarker for disease-specific survival in endometrioid endometrial carcinoma

Expression of Human Skin-Specific Genes Defined by Transcriptomics and Antibody-Based Profiling

Edqvist, Per-Henrik D; Fagerberg, Linn; Hallström, Björn M; Danielsson, Angelika et al.

Ingår i Journal of Histochemistry and Cytochemistry, s. 129-141, 2015

• DOI för Expression of Human Skin-Specific Genes Defined by Transcriptomics and Antibody-Based Profiling

The Human Endometrium-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling

Zieba, Agata; Sjöstedt, Evelina; Olovsson, Matts; Fagerberg, Linn et al.

Ingår i Omics, s. 659-668, 2015

• DOI för The Human Endometrium-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling

Epigenetic activation of a cryptic TBC1D16 transcript enhances melanoma progression by targeting EGFR

Vizoso, Miguel; Ferreira, Humberto J.; Lopez-Serra, Paula; Javier Carmona, F. et al.

Ingår i Nature Medicine, s. 741-+, 2015

• DOI för Epigenetic activation of a cryptic TBC1D16 transcript enhances melanoma progression by targeting EGFR

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

Lindskog, Cecilia; Linné, Jerker; Fagerberg, Linn; Hallstrom, Bjorn M. et al.

Ingår i BMC Genomics, 2015

• DOI för The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling
• Ladda ner fulltext (pdf) av The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

Glioma-derived plasminogen activator inhibitor-1 (PAI-1) regulates the recruitment of LRP1 positive mast cells

Roy, Ananya; Coum, Antoine; Marinescu, Voichita D; Põlajeva, Jelena et al.

Ingår i Oncotarget, s. 23647-23661, 2015

• DOI för Glioma-derived plasminogen activator inhibitor-1 (PAI-1) regulates the recruitment of LRP1 positive mast cells
• Ladda ner fulltext (pdf) av Glioma-derived plasminogen activator inhibitor-1 (PAI-1) regulates the recruitment of LRP1 positive mast cells

The Identification of Therapeutic Targets in Lung Cancer Based on Transcriptomic and Proteomic Characterization of Cancer-Testis Antigens

Djureinovic, Dijana; Hallström, Björn; Mattsson, Johanna Sofia Margareta; La Fleur, Linnea et al.

Ingår i Journal of Thoracic Oncology, 2015

Pleiotrophin promotes vascular abnormalization in gliomas and correlates with poor survival in patients with astrocytomas.

Zhang, Lei; Kundu, Soumi; Feenstra, Tjerk; Li, Xiujuan et al.

Ingår i Science Signaling, 2015

• DOI för Pleiotrophin promotes vascular abnormalization in gliomas and correlates with poor survival in patients with astrocytomas.

Tumor Vessel Up-Regulation of INSR Revealed by Single-Cell Expression Analysis of the Tyrosine Kinome and Phosphatome in Human Cancers

Kiflemariam, Sara; Ljungström, Viktor; Pontén, Fredrik; Sjöblom, Tobias

Ingår i American Journal of Pathology, s. 1600-1609, 2015

• DOI för Tumor Vessel Up-Regulation of INSR Revealed by Single-Cell Expression Analysis of the Tyrosine Kinome and Phosphatome in Human Cancers

The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling.

Gremel, Gabriela; Wanders, Alkwin; Cedernaes, Jonathan; Fagerberg, Linn et al.

Ingår i Journal of gastroenterology, s. 46-57, 2015

• DOI för The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling.

A prognosis based classification of undifferentiated uterine sarcomas: Identification of mitotic index, hormone receptors and YWHAE-FAM22 translocation status as predictors of survival

Gremel, Gabriela; Liew, Markus; Hamzei, Farzaneh; Hardell, Elin et al.

Ingår i International Journal of Cancer, s. 1608-1618, 2015

• DOI för A prognosis based classification of undifferentiated uterine sarcomas: Identification of mitotic index, hormone receptors and YWHAE-FAM22 translocation status as predictors of survival

Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer

O'Hurley, Gillian; Busch, Christer; Fagerberg, Linn; Hallstrom, Bjorn M. et al.

Ingår i PLOS ONE, 2015

• DOI för Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer
• Ladda ner fulltext (pdf) av Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer

High BRAF Mutation Frequency and Marked Survival Differences in Subgroups According to KRAS/BRAF Mutation Status and Tumor Tissue Availability in a Prospective Population-Based Metastatic Colorectal Cancer Cohort

Sorbye, Halfdan; Dragomir, Anca; Sundström, Magnus; Pfeiffer, Per et al.

Ingår i PLOS ONE, 2015

• DOI för High BRAF Mutation Frequency and Marked Survival Differences in Subgroups According to KRAS/BRAF Mutation Status and Tumor Tissue Availability in a Prospective Population-Based Metastatic Colorectal Cancer Cohort

High levels of WNT-5A in human glioma correlate with increased presence of tumor-associated microglia/monocytes

Dijksterhuis, Jacomijn P.; Arthofer, Elisa; Marinescu, Voichita D.; Nelander, Sven et al.

Ingår i Experimental Cell Research, s. 280-288, 2015

• DOI för High levels of WNT-5A in human glioma correlate with increased presence of tumor-associated microglia/monocytes

Prognostic impact of COX-2 in non-small cell lung cancer: A comprehensive compartment-specific evaluation of tumor and stromal cell expression

Mattsson, Johanna Sofia Margareta; Bergman, Bengt; Grinberg, Marianna; Edlund, Karolina et al.

Ingår i Cancer Letters, s. 837-845, 2015

• DOI för Prognostic impact of COX-2 in non-small cell lung cancer: A comprehensive compartment-specific evaluation of tumor and stromal cell expression

The Crux of Molecular Prognostications in NSCLC: An Optimized Biomarker Panel Fails to Outperform Clinical Parameters

Djureinovic, Dijana; Grinberg, Marianna; Mattsson, Johanna Sofia Margareta; Edlund, Karolina et al.

Ingår i Journal of Thoracic Oncology, 2015

ALK Rearrangements in Non-Small Cell Lung Cancer: Comprehensive Integration of Genomic, Gene Expression and Protein Analysis

Mattsson, Johanna S. M.; Svensson, Maria A.; Hallström, Björn; Koyi, Hirsh et al.

Ingår i Journal of Thoracic Oncology, 2015

FGF2 as a potential prognostic biomarker for proneural glioma patients

Sooman, Linda; Freyhult, Eva; Jaiswal, Archita; Navani, Sanjay et al.

Ingår i Acta Oncologica, s. 385-394, 2015

• DOI för FGF2 as a potential prognostic biomarker for proneural glioma patients

Foxf2 Is Required for Brain Pericyte Differentiation and Development and Maintenance of the Blood-Brain Barrier

Reyahi, Azadeh; Nik, Ali M.; Ghiami, Mozhgan; Gritli-Linde, Amel et al.

Ingår i Developmental Cell, s. 19-32, 2015

• DOI för Foxf2 Is Required for Brain Pericyte Differentiation and Development and Maintenance of the Blood-Brain Barrier

Tissue-based map of the human proteome

Uhlen, Mathias; Fagerberg, Linn; Hallstroem, Bjoern M.; Lindskog, Cecilia et al.

Ingår i Science, s. 394-+, 2015

• DOI för Tissue-based map of the human proteome

Elevated Expression of the C-Type Lectin CD93 in the Glioblastoma Vasculature Regulates Cytoskeletal Rearrangements That Enhance Vessel Function and Reduce Host Survival

Langenkamp, Elise; Zhang, Lei; Lugano, Roberta; Huang, Hua et al.

Ingår i Cancer Research, s. 4504-4516, 2015

• DOI för Elevated Expression of the C-Type Lectin CD93 in the Glioblastoma Vasculature Regulates Cytoskeletal Rearrangements That Enhance Vessel Function and Reduce Host Survival

Defining the human gallbladder proteome by transcriptomics and affinity proteomics

Kampf, Caroline; Mardinoglu, Adil; Fagerberg, Linn; Hallstrom, Bjorn M. et al.

Ingår i Proteomics, s. 2498-2507, 2014

• DOI för Defining the human gallbladder proteome by transcriptomics and affinity proteomics

Defining the Human Adipose Tissue Proteome To Reveal Metabolic Alterations in Obesity

Mardinoglu, Adil; Kampf, Caroline; Asplund, Anna; Fagerberg, Linn et al.

Ingår i Journal of Proteome Research, s. 5106-5119, 2014

• DOI för Defining the Human Adipose Tissue Proteome To Reveal Metabolic Alterations in Obesity

Breast cancer in young women - age a risk factor only in those not given chemotherapy

Fredholm, H.; Magnusson, Kristina; Lindstrom, L. S.; Garmo, Hans et al.

Ingår i Breast, 2014

• DOI för Breast cancer in young women - age a risk factor only in those not given chemotherapy

Affinity proteomics within rare diseases: a BIO-NMD study for blood biomarkers of muscular dystrophies

Ayoglu, Burcu; Chaouch, Amina; Lochmueller, Hanns; Politano, Luisa et al.

Ingår i EMBO Molecular Medicine, s. 918-936, 2014

• DOI för Affinity proteomics within rare diseases: a BIO-NMD study for blood biomarkers of muscular dystrophies

Decreased decorin expression in the tumor microenvironment

Bozoky, Benedek; Savchenko, Andrii; Guven, Hayrettin; Ponten, Fredrik et al.

Ingår i Cancer Medicine, s. 485-491, 2014

• DOI för Decreased decorin expression in the tumor microenvironment

Peroxiredoxin-1 protects estrogen receptor alpha from oxidative stress-induced suppression and is a protein biomarker of favorable prognosis in breast cancer

O'Leary, Patrick C.; Terrile, Marta; Bajor, Malgorzata; Gaj, Pawel et al.

Ingår i Breast Cancer Research, 2014

• DOI för Peroxiredoxin-1 protects estrogen receptor alpha from oxidative stress-induced suppression and is a protein biomarker of favorable prognosis in breast cancer
• Ladda ner fulltext (pdf) av Peroxiredoxin-1 protects estrogen receptor alpha from oxidative stress-induced suppression and is a protein biomarker of favorable prognosis in breast cancer

Glioma-derived macrophage migration inhibitory factor (MIF) promotes mast cell recruitment in a STAT5-dependent manner

Põlajeva, Jelena; Bergström, Tobias; Edqvist, Per-Henrik; Lundequist, Anders et al.

Ingår i Molecular Oncology, s. 50-58, 2014

• DOI för Glioma-derived macrophage migration inhibitory factor (MIF) promotes mast cell recruitment in a STAT5-dependent manner

WNT5A-mediated β-catenin-independent signalling is a novel regulator of cancer cell metabolism

Sherwood, Victoria; Chaurasiya, Shivendra Kumar; Ekström, Elin J; Guilmain, William et al.

Ingår i Carcinogenesis, s. 784-794, 2014

• DOI för WNT5A-mediated β-catenin-independent signalling is a novel regulator of cancer cell metabolism

Detection of enterovirus in the islet cells of patients with type 1 diabetes: what do we learn from immunohistochemistry?

Hansson, Sara F; Korsgren, Stella; Pontén, Fredrik; Korsgren, Olle

Ingår i Diabetologia, s. 645-646, 2014

• DOI för Detection of enterovirus in the islet cells of patients with type 1 diabetes: what do we learn from immunohistochemistry?

PTPN6 expression is epigenetically regulated and influences survival and response to chemotherapy in high-grade gliomas

Sooman, Linda; Ekman, Simon; Tsakonas, Georgios; Jaiswal, Archita et al.

Ingår i Tumor Biology, s. 4479-4488, 2014

• DOI för PTPN6 expression is epigenetically regulated and influences survival and response to chemotherapy in high-grade gliomas

The Kidney Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling

Habuka, Masato; Fagerberg, Linn; Hallstrom, Bjorn M.; Kampf, Caroline et al.

Ingår i PLOS ONE, 2014

• DOI för The Kidney Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling
• Ladda ner fulltext (pdf) av The Kidney Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling

The Human Pancreas Proteome Defined by Transcriptomics and Antibody-Based Profiling

Danielsson, Angelika; Ponten, Fredrik; Fagerberg, Linn; Hallstrom, Bjorn M. et al.

Ingår i PLOS ONE, 2014

• DOI för The Human Pancreas Proteome Defined by Transcriptomics and Antibody-Based Profiling
• Ladda ner fulltext (pdf) av The Human Pancreas Proteome Defined by Transcriptomics and Antibody-Based Profiling

Aberrantly activated claudin 6 and 18.2 as potential therapy targets in non-small-cell lung cancer

Micke, Patrick; Mattsson, Johanna Sofia Margareta; Edlund, Karolina; Lohr, Miriam et al.

Ingår i International Journal of Cancer, s. 2206-2214, 2014

• DOI för Aberrantly activated claudin 6 and 18.2 as potential therapy targets in non-small-cell lung cancer

Human cytomegalovirus tegument protein pp65 is detected in all intra- and extra-axial brain tumours independent of the tumour type or grade

Libard, Sylwia; Popova, Svetlana N; Amini, Rose-Marie; Kärjä, Vesa et al.

Ingår i PLOS ONE, 2014

• DOI för Human cytomegalovirus tegument protein pp65 is detected in all intra- and extra-axial brain tumours independent of the tumour type or grade
• Ladda ner fulltext (pdf) av Human cytomegalovirus tegument protein pp65 is detected in all intra- and extra-axial brain tumours independent of the tumour type or grade

The role of SATB2 as a diagnostic marker for tumors of colorectal origin: Results of a pathology-based clinical prospective study

Dragomir, Anca; de Wit, Meike; Johansson, Christine; Uhlen, Mathias et al.

Ingår i American Journal of Clinical Pathology, s. 630-638, 2014

• DOI för The role of SATB2 as a diagnostic marker for tumors of colorectal origin: Results of a pathology-based clinical prospective study

The human testis-specific proteome defined by transcriptomics and antibody-based profiling

Djureinovic, Dijana; Fagerberg, L.; Hallstrom, B.; Danielsson, A. et al.

Ingår i Molecular human reproduction, s. 476-488, 2014

• DOI för The human testis-specific proteome defined by transcriptomics and antibody-based profiling

The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling

Lindskog, Cecilia; Fagerberg, Linn; Hallstrom, Bjorn; Edlund, Karolina et al.

Ingår i The FASEB Journal, s. 5184-5196, 2014

• DOI för The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling

A systematic analysis of commonly used antibodies in cancer diagnostics

Gremel, Gabriela; Bergman, Julia; Djureinovic, Dijana; Edqvist, Per-Henrik et al.

Ingår i Histopathology, s. 293-305, 2014

• DOI för A systematic analysis of commonly used antibodies in cancer diagnostics

Molecular- and organelle-based predictive paradigm underlying recovery by left ventricular assist device support

Liem, David A; Nsair, Ali; Setty, Shaun P; Cadeiras, Martin et al.

Ingår i Circulation Heart Failure, s. 359-366, 2014

• DOI för Molecular- and organelle-based predictive paradigm underlying recovery by left ventricular assist device support

Antibody validation of immunohistochemistry for biomarker discovery: Recommendations of a consortium of academic and pharmaceutical based histopathology researchers

Howat, William J; Lewis, Arthur; Jones, Phillipa; Kampf, Caroline et al.

Ingår i Methods, s. 34-38, 2014

• DOI för Antibody validation of immunohistochemistry for biomarker discovery: Recommendations of a consortium of academic and pharmaceutical based histopathology researchers
• Ladda ner fulltext (pdf) av Antibody validation of immunohistochemistry for biomarker discovery: Recommendations of a consortium of academic and pharmaceutical based histopathology researchers

The human liver-specific proteome defined by transcriptomics and antibody-based profiling

Kampf, Caroline; Mardinoglu, Adil; Fagerberg, Linn; Hallstrom, Bjorn M. et al.

Ingår i The FASEB Journal, s. 2901-2914, 2014

• DOI för The human liver-specific proteome defined by transcriptomics and antibody-based profiling

Analysis of Candidate Genes for Lineage-Specific Expression Changes in Humans and Primates

Lindskog, Cecilia; Kuhlwilm, Martin; Davierwala, Armaity; Fu, Ning et al.

Ingår i Journal of Proteome Research, s. 3596-3606, 2014

• DOI för Analysis of Candidate Genes for Lineage-Specific Expression Changes in Humans and Primates

A study of embryonic stem cell-related proteins in human astrocytomas: Identification of Nanog as a predictor of survival

Elsir, Tamador; Edqvist, Per-Henrik; Carlson, Joseph; Ribom, Dan et al.

Ingår i International Journal of Cancer, s. 1123-1131, 2014

• DOI för A study of embryonic stem cell-related proteins in human astrocytomas: Identification of Nanog as a predictor of survival

Subtyping of gliomas of various WHO grades by the application of immunohistochemistry

Popova, Svetlana N; Bergqvist, Michael; Dimberg, Anna; Edqvist, Per-Henrik et al.

Ingår i Histopathology, s. 365-379, 2014

• DOI för Subtyping of gliomas of various WHO grades by the application of immunohistochemistry

Colorectal cancer candidate biomarkers identified by tissue secretome proteome profiling

de Wit, Meike; Kant, Huub; Piersma, Sander R.; Pham, Thang V. et al.

Ingår i Journal of Proteomics, s. 26-39, 2014

• DOI för Colorectal cancer candidate biomarkers identified by tissue secretome proteome profiling

Antibody performance in western blot applications is context-dependent

Algenas, Cajsa; Agaton, Charlotta; Fagerberg, Linn; Asplund, Anna et al.

Ingår i Biotechnology Journal, s. 435-445, 2014

• DOI för Antibody performance in western blot applications is context-dependent

Detection of the human endogenous retrovirus ERV3-encoded Env-protein in human tissues using antibody-based proteomics

Fei, Chen; Atterby, Christina; Edqvist, Per-Henrik; Pontén, Fredrik et al.

Ingår i Journal of the Royal Society of Medicine, s. 22-29, 2014

• DOI för Detection of the human endogenous retrovirus ERV3-encoded Env-protein in human tissues using antibody-based proteomics

Evidence for a morphologically distinct and functionally robust cell type in the proximal tubules of human kidney

Hansson, Jennifer; Hultenby, Kjell; Cramnert, Catharina; Pontén, Fredrik et al.

Ingår i Human Pathology, s. 382-393, 2014

• DOI för Evidence for a morphologically distinct and functionally robust cell type in the proximal tubules of human kidney

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

Fagerberg, Linn; Hallström, Björn M; Oksvold, Per; Kampf, Caroline et al.

Ingår i Molecular & Cellular Proteomics, s. 397-406, 2014

• DOI för Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

Investigation of molecular alterations of AKT-3 in triple-negative breast cancer

O'Hurley, Gillian; Daly, Etáin; O'Grady, Anthony; Cummins, Robert et al.

Ingår i Histopathology, s. 660-670, 2014

• DOI för Investigation of molecular alterations of AKT-3 in triple-negative breast cancer

Contribution of Antibody-based Protein Profiling to the Human Chromosome-centric Proteome Project (C-HPP)

Fagerberg, Linn; Oksvold, Per; Skogs, Marie; Algenäs, Cajsa et al.

Ingår i Journal of Proteome Research, s. 2439-2448, 2013

• DOI för Contribution of Antibody-based Protein Profiling to the Human Chromosome-centric Proteome Project (C-HPP)

Systematic antibody generation and validation via tissue microarray technology leading to identification of a novel protein prognostic panel in breast cancer

O'Leary, Patrick C.; Penny, Sarah A.; Dolan, Roisin T.; Kelly, Catherine M. et al.

Ingår i BMC Cancer, 2013

• DOI för Systematic antibody generation and validation via tissue microarray technology leading to identification of a novel protein prognostic panel in breast cancer
• Ladda ner fulltext (pdf) av Systematic antibody generation and validation via tissue microarray technology leading to identification of a novel protein prognostic panel in breast cancer

In situ Protein Detection for Companion Diagnostics

Gremel, Gabriela; Grannas, Karin; Sutton, Lesley Ann; Pontén, Fredrik et al.

Ingår i Frontiers in Oncology, 2013

• DOI för In situ Protein Detection for Companion Diagnostics

The prognostic relevance of tumour-infiltrating plasma cells and immunoglobulin kappa C indicates an important role of the humoral immune response in non-small cell lung cancer

Lohr, Miriam; Edlund, Karolina; Botling, Johan; Hammad, Seddik et al.

Ingår i Cancer Letters, s. 222-228, 2013

• DOI för The prognostic relevance of tumour-infiltrating plasma cells and immunoglobulin kappa C indicates an important role of the humoral immune response in non-small cell lung cancer

Vandetanib combined with a p38 MAPK inhibitor synergistically reduces glioblastoma cell survival

Sooman, Linda; Lennartsson, Johan; Gullbo, Joachim; Bergqvist, Michael et al.

Ingår i Medical Oncology, s. 638, 2013

• DOI för Vandetanib combined with a p38 MAPK inhibitor synergistically reduces glioblastoma cell survival

Biomarker discovery in non-small cell lung cancer: integrating gene expression profiling, meta-analysis and tissue microarray validation

Botling, Johan; Edlund, Karolina; Lohr, Miriam; Hellwig, Birte et al.

Ingår i Clinical Cancer Research, s. 194-204, 2013

• DOI för Biomarker discovery in non-small cell lung cancer: integrating gene expression profiling, meta-analysis and tissue microarray validation

Expression of the actin-binding protein Anillin is a prognostic biomarker for primary ER positive breast cancer.

Magnusson, Kristina; Gremel, Gabriela; Ponten, Fredrik; Jirstrom, Karin

Ingår i Cancer Research, 2013

• DOI för Expression of the actin-binding protein Anillin is a prognostic biomarker for primary ER positive breast cancer.

European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

Lindskog, Cecilia; Ellström, Patrik; Olsen, Björn; Pontén, Fredrik et al.

Ingår i PLOS ONE, 2013

• DOI för European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye
• Ladda ner fulltext (pdf) av European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

A Texture Based Pattern Recognition Approach to Distinguish Melanoma from Non-Melanoma Cells in Histopathological Tissue Microarray Sections

Rexhepaj, Elton; Agnarsdóttir, Margrét; Bergman, Julia; Edqvist, Per-Henrik et al.

Ingår i PLOS ONE, 2013

• DOI för A Texture Based Pattern Recognition Approach to Distinguish Melanoma from Non-Melanoma Cells in Histopathological Tissue Microarray Sections
• Ladda ner fulltext (pdf) av A Texture Based Pattern Recognition Approach to Distinguish Melanoma from Non-Melanoma Cells in Histopathological Tissue Microarray Sections

The protein phosphatase 2 subunit PR48 is a novel melanoma tumor suppressor gene.

van Kempen, Leon C. L.; Jarry, Jonathan; Elchebly, Mounib; Redpath, Margaret et al.

Ingår i Cancer Research, 2013

• DOI för The protein phosphatase 2 subunit PR48 is a novel melanoma tumor suppressor gene.

Increased expression of heparanase in symptomatic carotid atherosclerosis

Österholm, C.; Folkersen, L.; Lengquist, M.; Pontén, Fredrik et al.

Ingår i Atherosclerosis, s. 67-73, 2013

• DOI för Increased expression of heparanase in symptomatic carotid atherosclerosis

Enteroviruses and the pathogenesis of type 1 diabetes revisited: cross-reactivity of enterovirus capsid protein (VP1) antibodies with human mitochondrial proteins

Hansson, Sara F.; Korsgren, Stella; Pontén, Fredrik; Korsgren, Olle

Ingår i Journal of Pathology, s. 719-728, 2013

• DOI för Enteroviruses and the pathogenesis of type 1 diabetes revisited: cross-reactivity of enterovirus capsid protein (VP1) antibodies with human mitochondrial proteins

Foxf2 in Intestinal Fibroblasts Reduces Numbers of Lgr5(+) Stem Cells and Adenoma Formation by Inhibiting Wnt Signaling

Nik, Ali Moussavi; Reyahi, Azadeh; Pontén, Fredrik; Carlsson, Peter

Ingår i Gastroenterology, s. 1001-1011, 2013

• DOI för Foxf2 in Intestinal Fibroblasts Reduces Numbers of Lgr5(+) Stem Cells and Adenoma Formation by Inhibiting Wnt Signaling

Estrogen receptor expression induces changes in the microRNA pool in human colon cancer cells

Edvardsson, Karin; Nguyen-Vu, Trang; Kalasekar, Sharanya M.; Pontén, Fredrik et al.

Ingår i Carcinogenesis, s. 1431-1441, 2013

• DOI för Estrogen receptor expression induces changes in the microRNA pool in human colon cancer cells

Improving the Diagnosis and Management of Neuroendocrine Tumors: Utilizing New Advances in Biomarker and Molecular Imaging Science

Giandomenico, Valeria; Modlin, Irvin M.; Pontén, Fredrik; Nilsson, Mats et al.

Ingår i Neuroendocrinology, s. 16-30, 2013

• DOI för Improving the Diagnosis and Management of Neuroendocrine Tumors: Utilizing New Advances in Biomarker and Molecular Imaging Science

Progesterone receptor negativity is an independent risk factor for relapse in patients with early stage endometrioid endometrial adenocarcinoma

Huvila, Jutta; Talve, Lauri; Carpen, Olli; Edqvist, Per-Henrik et al.

Ingår i Gynecologic Oncology, s. 463-469, 2013

• DOI för Progesterone receptor negativity is an independent risk factor for relapse in patients with early stage endometrioid endometrial adenocarcinoma

Profiling of Atherosclerotic Lesions by Gene and Tissue Microarrays Reveals PCSK6 as a Novel Protease in Unstable Carotid Atherosclerosis

Perisic, Ljubica; Hedin, Erika; Razuvaev, Anton; Lengquist, Mariette et al.

Ingår i Arteriosclerosis, Thrombosis and Vascular Biology, s. 2432-2443, 2013

• DOI för Profiling of Atherosclerotic Lesions by Gene and Tissue Microarrays Reveals PCSK6 as a Novel Protease in Unstable Carotid Atherosclerosis

Antibodies Biotinylated Using a Synthetic Z-domain from Protein A Provide Stringent In Situ Protein Detection

Andersson, Sandra; Konrad, Anna; Ashok, Nikhil; Pontén, Fredrik et al.

Ingår i Journal of Histochemistry and Cytochemistry, s. 773-784, 2013

• DOI för Antibodies Biotinylated Using a Synthetic Z-domain from Protein A Provide Stringent In Situ Protein Detection

CDK-mediated activation of the SCFFBXO28 ubiquitin ligase promotes MYC-driven transcription and tumourigenesis and predicts poor survival in breast cancer

Cepeda, Diana; Ng, Hwee-Fang; Sharifi, Hamid Reza; Mahmoudi, Salah et al.

Ingår i EMBO Molecular Medicine, s. 1067-1086, 2013

• DOI för CDK-mediated activation of the SCFFBXO28 ubiquitin ligase promotes MYC-driven transcription and tumourigenesis and predicts poor survival in breast cancer
• Ladda ner fulltext (pdf) av CDK-mediated activation of the SCFFBXO28 ubiquitin ligase promotes MYC-driven transcription and tumourigenesis and predicts poor survival in breast cancer

Majority of differentially expressed genes are down-regulated during malignant transformation in a four-stage model

Danielsson, Frida; Skogs, Marie; Huss, Mikael; Rexhepaj, Elton et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 6853-6858, 2013

• DOI för Majority of differentially expressed genes are down-regulated during malignant transformation in a four-stage model

Novel signatures of cancer-associated fibroblasts

Bozóky, Benedek; Savchenko, Andrii; Csermely, Péter; Korcsmáros, Tamás et al.

Ingår i International Journal of Cancer, s. 286-293, 2013

• DOI för Novel signatures of cancer-associated fibroblasts

Identifying Prognostically Relevant Subsets of Endometrial Cancer Using Unsupervised Clustering of Immunohistochemical Staining Data

Huvila, J.; Laajala, D.; Edvist, P. H.; Talve, L. et al.

Ingår i International Journal of Gynecological Cancer, 2013

Production of tissue microarrays, immunohistochemistry staining and digitalization within the human protein atlas

Kampf, Caroline; Olsson, Ingmarie; Ryberg, Urban; Sjöstedt, Evelina et al.

Ingår i Journal of Visualized Experiments, 2012

• DOI för Production of tissue microarrays, immunohistochemistry staining and digitalization within the human protein atlas
• Ladda ner fulltext (pdf) av Production of tissue microarrays, immunohistochemistry staining and digitalization within the human protein atlas

The presence of tumor associated macrophages in tumor stroma as a prognostic marker for breast cancer patients

Medrek, Catharina; Pontén, Fredrik; Jirstrom, Karin; Leandersson, Karin

Ingår i BMC Cancer, s. 306, 2012

• DOI för The presence of tumor associated macrophages in tumor stroma as a prognostic marker for breast cancer patients
• Ladda ner fulltext (pdf) av The presence of tumor associated macrophages in tumor stroma as a prognostic marker for breast cancer patients

A tool to facilitate clinical biomarker studies - a tissue dictionary based on the Human Protein Atlas

Kampf, Caroline; Bergman, Julia; Oksvold, Per; Asplund, Anna et al.

Ingår i BMC Medicine, s. 103, 2012

• DOI för A tool to facilitate clinical biomarker studies - a tissue dictionary based on the Human Protein Atlas
• Ladda ner fulltext (pdf) av A tool to facilitate clinical biomarker studies - a tissue dictionary based on the Human Protein Atlas

CD99 is a novel prognostic stromal marker in non-small cell lung cancer

Edlund, Karolina; Lindskog, Cecilia; Saito, Akira; Berglund, Anders et al.

Ingår i International Journal of Cancer, s. 2264-2273, 2012

• DOI för CD99 is a novel prognostic stromal marker in non-small cell lung cancer

Transcriptional profiling of human glioblastoma vessels indicates a key role of VEGF-A and TGFβ2 in vascular abnormalization

Dieterich, Lothar C.; Mellberg, Sofie; Langenkamp, Elise; Zhang, Lei et al.

Ingår i Journal of Pathology, s. 378-390, 2012

• DOI för Transcriptional profiling of human glioblastoma vessels indicates a key role of VEGF-A and TGFβ2 in vascular abnormalization

Paladin (X99384) is expressed in the vasculature and shifts from endothelial to vascular smooth muscle cells during mouse development

Wallgard, Elisabet; Nitzsche, Anja; Larsson, Jimmy; Guo, Xiaoyuan et al.

Ingår i Developmental Dynamics, s. 770-786, 2012

• DOI för Paladin (X99384) is expressed in the vasculature and shifts from endothelial to vascular smooth muscle cells during mouse development

Scalable In Situ Hybridization on Tissue Arrays for Validation of Novel Cancer and Tissue-Specific Biomarkers

Kiflemariam, Sara; Andersson, Sandra; Asplund, Anna; Pontén, Fredrik et al.

Ingår i PLOS ONE, 2012

• DOI för Scalable In Situ Hybridization on Tissue Arrays for Validation of Novel Cancer and Tissue-Specific Biomarkers
• Ladda ner fulltext (pdf) av Scalable In Situ Hybridization on Tissue Arrays for Validation of Novel Cancer and Tissue-Specific Biomarkers

GABA-A Channel Subunit Expression in Human Glioma Correlates with Tumor Histology and Clinical Outcome

Smits, Anja; Jin, Zhe; Elsir, Tamador; Pedder, Hugo et al.

Ingår i PLOS ONE, 2012

• DOI för GABA-A Channel Subunit Expression in Human Glioma Correlates with Tumor Histology and Clinical Outcome
• Ladda ner fulltext (pdf) av GABA-A Channel Subunit Expression in Human Glioma Correlates with Tumor Histology and Clinical Outcome

BCL2L1 has a functional role in colorectal cancer and its protein expression is associated with chromosome 20q gain

Sillars-Hardebol, Anke H.; Carvalho, Beatriz; Belien, Jeroen A. M.; de Wit, Meike et al.

Ingår i Journal of Pathology, s. 442-450, 2012

• DOI för BCL2L1 has a functional role in colorectal cancer and its protein expression is associated with chromosome 20q gain

Antibody-based Protein Profiling of the Human Chromosome 21

Uhlén, Mathias; Oksvold, Per; Algenäs, Cajsa; Hamsten, Carl et al.

Ingår i Molecular & Cellular Proteomics, 2012

• DOI för Antibody-based Protein Profiling of the Human Chromosome 21

TPX2 and AURKA promote 20q amplicon-driven colorectal adenoma to carcinoma progression

Sillars-Hardebol, Anke H; Carvalho, Beatriz; Tijssen, Marianne; Beliën, Jeroen A M et al.

Ingår i Gut, s. 1568-1575, 2012

• DOI för TPX2 and AURKA promote 20q amplicon-driven colorectal adenoma to carcinoma progression

Cell surface proteomics identifies glucose transporter type 1 and prion protein as candidate biomarkers for colorectal adenoma-to-carcinoma progression

de Wit, Meike; Jimenez, Connie R; Carvalho, Beatriz; Belien, Jeroen A M et al.

Ingår i Gut, s. 855-864, 2012

• DOI för Cell surface proteomics identifies glucose transporter type 1 and prion protein as candidate biomarkers for colorectal adenoma-to-carcinoma progression

Novel pancreatic beta cell-specific proteins: Antibody-based proteomics for identification of new biomarker candidates

Lindskog, Cecilia; Korsgren, Olle; Pontén, Fredrik; Eriksson, Jan W et al.

Ingår i Journal of Proteomics, s. 2611-2620, 2012

• DOI för Novel pancreatic beta cell-specific proteins: Antibody-based proteomics for identification of new biomarker candidates

CSE1L, DIDO1 and RBM39 in colorectal adenoma to carcinoma progression

Sillars-Hardebol, Anke H.; Carvalho, Beatriz; Belien, Jeroen A. M.; de Wit, Meike et al.

Ingår i Cellular Oncology, s. 293-300, 2012

• DOI för CSE1L, DIDO1 and RBM39 in colorectal adenoma to carcinoma progression

Peroxiredoxin-1 Protects Against Oncogene-induced Suppression of the Estrogen Receptor and is a Biomarker of Favourable Prognosis in Estrogen Receptor-positive Breast Cancer

O'Leary, P. C.; Brennan, D. J.; O'Connor, D. P.; Hennessy, B. T. et al.

Ingår i European Journal of Cancer, 2012

• DOI för Peroxiredoxin-1 Protects Against Oncogene-induced Suppression of the Estrogen Receptor and is a Biomarker of Favourable Prognosis in Estrogen Receptor-positive Breast Cancer

SATB2 is an Independent Predictor of Outcome in Colorectal Cancer

Naicker, K.; Brennan, D. J.; Klinger, R.; Pontén, Fredrik et al.

Ingår i European Journal of Cancer, 2012

• DOI för SATB2 is an Independent Predictor of Outcome in Colorectal Cancer

Low RBM3 protein expression correlates with tumour progression and poor prognosis in malignant melanoma: An analysis of 215 cases from the Malmo Diet and Cancer Study

Jonsson, Liv; Bergman, Julia; Nodin, Björn; Manjer, Jonas et al.

Ingår i Journal of Translational Medicine, s. 114, 2011

• DOI för Low RBM3 protein expression correlates with tumour progression and poor prognosis in malignant melanoma: An analysis of 215 cases from the Malmo Diet and Cancer Study

Tumor-specific HMG-CoA reductase expression in primary premenopausal breast cancer predicts response to tamoxifen

Brennan, Donal J.; Laursen, Henriette; O'Connor, Darran P.; Borgquist, Signe et al.

Ingår i Breast Cancer Research, 2011

• DOI för Tumor-specific HMG-CoA reductase expression in primary premenopausal breast cancer predicts response to tamoxifen

Functional and prognostic relevance of the homeobox protein MSX2 in malignant melanoma

Gremel, G.; Ryan, D.; Rafferty, M.; Lanigan, F. et al.

Ingår i British Journal of Cancer, s. 565-574, 2011

• DOI för Functional and prognostic relevance of the homeobox protein MSX2 in malignant melanoma

Growth differentiation factor 15: a prognostic marker for recurrence in colorectal cancer

Wallin, Ulrik; Glimelius, Bengt; Jirström, K.; Darmanis, Spyros et al.

Ingår i British Journal of Cancer, s. 1619-1627, 2011

• DOI för Growth differentiation factor 15: a prognostic marker for recurrence in colorectal cancer

GAD1 is a biomarker for benign and malignant prostatic tissue

Jaraj, Sara Jonmarker; Augsten, Martin; Häggarth, Lars; Wester, Kenneth et al.

Ingår i Scandinavian Journal of Urology and Nephrology, s. 39-45, 2011

• DOI för GAD1 is a biomarker for benign and malignant prostatic tissue

Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice

Elkabets, Moshe; Gifford, Ann M.; Scheel, Christina; Nilsson, Björn et al.

Ingår i Journal of Clinical Investigation, s. 784-799, 2011

• DOI för Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice

Sun-Induced Nonsynonymous p53 Mutations Are Extensively Accumulated and Tolerated in Normal Appearing Human Skin

Ståhl, Patrik L.; Stranneheim, Henrik; Asplund, Anna; Berglund, Lisa et al.

Ingår i Journal of Investigative Dermatology, s. 504-508, 2011

• DOI för Sun-Induced Nonsynonymous p53 Mutations Are Extensively Accumulated and Tolerated in Normal Appearing Human Skin

RBM3-regulated genes promote DNA integrity and affect clinical outcome in epithelial ovarian cancer

Ehlén, Åsa; Nodin, Björn; Rexhepaj, Elton; Brändstedt, Jenny et al.

Ingår i Translational Oncology, s. 212-221, 2011

SATB2 in Combination With Cytokeratin 20 Identifies Over 95% of all Colorectal Carcinomas

Magnusson, Kristina; de Wit, Meike; Brennan, Donal J.; Johnson, Louis B. et al.

Ingår i American Journal of Surgical Pathology, s. 937-948, 2011

• DOI för SATB2 in Combination With Cytokeratin 20 Identifies Over 95% of all Colorectal Carcinomas

Large-Scale Protein Profiling in Human Cell Lines Using Antibody-Based Proteomics

Fagerberg, Linn; Strömberg, Sara; El-Obeid, Adila; Gry, Marcus et al.

Ingår i Journal of Proteome Research, s. 4066-4075, 2011

• DOI för Large-Scale Protein Profiling in Human Cell Lines Using Antibody-Based Proteomics

Diagnostic biomarkers of prostate cancer

Häggarth, Lars; Hägglöf, Christina; Jaraj, Sara Jonmarker; Wester, Kenneth et al.

Ingår i Scandinavian Journal of Urology and Nephrology, s. 60-67, 2011

• DOI för Diagnostic biomarkers of prostate cancer

Generation of monospecific antibodies based on affinity capture of polyclonal antibodies

Hjelm, Barbara; Forsström, Bjorn; Igel, Ulrika; Johannesson, Henrik et al.

Ingår i Protein Science, s. 1824-1835, 2011

• DOI för Generation of monospecific antibodies based on affinity capture of polyclonal antibodies

High nuclear RBM3 expression is associated with an improved prognosis in colorectal cancer

Hjelm, Barbara; Brennan, Donal J.; Zendehrokh, Nooreldin; Eberhard, Jakob et al.

Ingår i Proteomics Clinical Applications, s. 624-635, 2011

• DOI för High nuclear RBM3 expression is associated with an improved prognosis in colorectal cancer

Tumour-specific HMG-CoAR is an independent predictor of recurrence free survival in epithelial ovarian cancer

Brennan, Donal J.; Brändstedt, Jenny; Rexhepaj, Elton; Foley, Michael et al.

Ingår i BMC Cancer, s. 125, 2010

• DOI för Tumour-specific HMG-CoAR is an independent predictor of recurrence free survival in epithelial ovarian cancer

Expression of the RNA-binding protein RBM3 is associated with a favourable prognosis and cisplatin sensitivity in epithelial ovarian cancer

Ehlén, Åsa; Brennan, Donal J.; Nodin, Björn; O'Connor, Darran P. et al.

Ingår i Journal of Translational Medicine, s. 78, 2010

• DOI för Expression of the RNA-binding protein RBM3 is associated with a favourable prognosis and cisplatin sensitivity in epithelial ovarian cancer

Tissue-specific protein expression in human cells. tissues end organs

Gry, Markus; Oksvold, P; Pontén, Fredrik; Uhlén, Mathias

Ingår i Journal of Proteomics and Bioinformatics, s. 286-293, 2010

• DOI för Tissue-specific protein expression in human cells. tissues end organs

The impact of tissue fixatives on morphology and antibody-based protein profiling in tissues and cells

Paavilainen, Linda; Edvinsson, Åsa; Asplund, Anna; Hober, Sophia et al.

Ingår i Journal of Histochemistry and Cytochemistry, s. 237-246, 2010

• DOI för The impact of tissue fixatives on morphology and antibody-based protein profiling in tissues and cells

Molecular profiling using tissue microarrays as a tool to identify predictive biomarkers in laryngeal cancer treated with radiotherapy

Holgersson, Georg; Ekman, Simon; Reizenstein, Johan; Bergqvist, Michael et al.

Ingår i Cancer Genomics & Proteomics, s. 1-7, 2010

Immunohistochemical detection of tyrosine phosphatase SHP-1 predicts outcome after radical prostatectomy for localized prostate cancer

Tassidis, Helena; Brokken, Leon J. S.; Jirström, Karin; Ehrnström, Roy et al.

Ingår i International Journal of Cancer, s. 2296-2307, 2010

• DOI för Immunohistochemical detection of tyrosine phosphatase SHP-1 predicts outcome after radical prostatectomy for localized prostate cancer

Towards a knowledge-based Human Protein Atlas

Uhlén, Mathias; Oksvold, Per; Fagerberg, Linn; Lundberg, Emma et al.

Ingår i Nature Biotechnology, s. 1248-1250, 2010

• DOI för Towards a knowledge-based Human Protein Atlas

International network of cancer genome projects

Hudson, Thomas J.; Pontén, Fredrik; Yang, Huanming; International Cancer Genome Consortium, undefined

Ingår i Nature, s. 993-998, 2010

• DOI för International network of cancer genome projects

Toward Next Generation Plasma Profiling via Heat-induced Epitope Retrieval and Array-based Assays

Schwenk, Jochen M.; Igel, Ulrika; Neiman, Maja; Langen, Hanno et al.

Ingår i Molecular & Cellular Proteomics, s. 2497-2507, 2010

• DOI för Toward Next Generation Plasma Profiling via Heat-induced Epitope Retrieval and Array-based Assays

Topoisomerase I Amplification in Melanoma is Associated with More Advanced Tumours and Poor Prognosis

Ryan, Denise; Rafferty, Mairin; Hegarty, Shauna; O´Leary, Patrick et al.

Ingår i Pigment Cell and Melanoma Research, s. 542-553, 2010

• DOI för Topoisomerase I Amplification in Melanoma is Associated with More Advanced Tumours and Poor Prognosis

SOX10 expression in superficial spreading and nodular malignant melanomas

Agnarsdóttir, Margrét; Sooman, Linda; Bolander, Åsa; Strömberg, Sara et al.

Ingår i Melanoma research, s. 468-478, 2010

• DOI för SOX10 expression in superficial spreading and nodular malignant melanomas

Antibody-based proteomics for discovery and exploration of proteins expressed in pancreatic islets

Lindskog, Cecilia; Asplund, Anna; Engkvist, Margareta; Pontén, Fredrik et al.

Ingår i Discovery Medicine, s. 565-578, 2010

Correlations between RNA and protein expression profiles in 23 human cell lines

Gry, Marcus; Rimini, Rebecca; Strömberg, Sara; Asplund, Anna et al.

Ingår i BMC Genomics, s. 365, 2009

• DOI för Correlations between RNA and protein expression profiles in 23 human cell lines

ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth

Markljung, Ellen; Jiang, Lin; Jaffe, Jacob D.; Mikkelsen, Tarjei S. et al.

Ingår i PLoS biology, 2009

• DOI för ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth

A global view of protein expression in human cells, tissues, and organs

Pontén, Fredrik; Gry, Marcus; Fagerberg, Linn; Lundberg, Emma et al.

Ingår i Molecular Systems Biology, s. 337, 2009

• DOI för A global view of protein expression in human cells, tissues, and organs

Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles.

Rodriguez, Henry; Snyder, Mike; Uhlén, Mathias; Andrews, Phil et al.

Ingår i Journal of Proteome Research, s. 3689-3692, 2009

• DOI för Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles.

Nuclear expression of the RNA-binding protein RBM3 is associated with an improved clinical outcome in breast cancer

Jögi, Annika; Brennan, Donal J; Rydén, Lisa; Magnusson, Kristina et al.

Ingår i Modern Pathology, s. 1564-1574, 2009

• DOI för Nuclear expression of the RNA-binding protein RBM3 is associated with an improved clinical outcome in breast cancer

High expression of tumour-associated trypsin inhibitor correlates with liver metastasis and poor prognosis in colorectal cancer

Gaber, A.; Johansson, M.; Stenman, U-H.; Hotakainen, K. et al.

Ingår i British Journal of Cancer, s. 1540-1548, 2009

• DOI för High expression of tumour-associated trypsin inhibitor correlates with liver metastasis and poor prognosis in colorectal cancer

Selective expression of Syntaxin-7 protein in benign melanocytes and malignant melanoma

Strömberg, Sara; Agnarsdóttir, Margrét; Magnusson, Kristina; Rexhepaj, Elton et al.

Ingår i Journal of Proteome Research, s. 1639-1646, 2009

• DOI för Selective expression of Syntaxin-7 protein in benign melanocytes and malignant melanoma

Extensive expression of craniofacial related homeobox genes in canine mammary sarcomas

Wensman, Helena; Göransson, Hanna; Leuchowius, Karl-Johan; Strömberg, Sara et al.

Ingår i Breast Cancer Research and Treatment, s. 333-343, 2009

• DOI för Extensive expression of craniofacial related homeobox genes in canine mammary sarcomas

The prognostic significance of tryptophanyl-tRNA synthetase in colorectal cancer

Ghanipour, Arezo; Jirström, Karin; Pontén, Fredrik; Glimelius, Bengt et al.

Ingår i Cancer Epidemiology, Biomarkers and Prevention, s. 2949-2956, 2009

• DOI för The prognostic significance of tryptophanyl-tRNA synthetase in colorectal cancer

Pulmonary Autoimmunity as a Feature of Autoimmune Polyendocrine Syndrome Type 1 and Identification of KCNRG as a Bronchial Autoantigen

Alimohammadi, Mohammad; Dubois, Noemie; Sköldberg, Filip; Hallgren, Åsa et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 4396-4401, 2009

• DOI för Pulmonary Autoimmunity as a Feature of Autoimmune Polyendocrine Syndrome Type 1 and Identification of KCNRG as a Bronchial Autoantigen

Prognostic significance of stromal platelet-derived growth factor beta-receptor expression in human breast cancer

Paulsson, Janna; Sjöblom, Tobias; Micke, Patrick; Pontén, Fredrik et al.

Ingår i American Journal of Pathology, s. 334-341, 2009

• DOI för Prognostic significance of stromal platelet-derived growth factor beta-receptor expression in human breast cancer

Herbal melanin activates TLR4/NF-kappaB signaling pathway

Öberg, Fredrik; Haseeb, Adil; Ahnfelt, Matilda; Pontén, Fredrik et al.

Ingår i Phytomedicine, s. 477-84, 2009

• DOI för Herbal melanin activates TLR4/NF-kappaB signaling pathway

DLG3/SAP102 protein expression in malformations of cortical development: A study of human epileptic cortex by tissue microarray

Qu, Mingqi; Aronica, Eleonora; Boer, Karin; Fällmar, David et al.

Ingår i Epilepsy Research, s. 33-41, 2009

• DOI för DLG3/SAP102 protein expression in malformations of cortical development: A study of human epileptic cortex by tissue microarray

Intercalated discs: multiple proteins perform multiple functions in non-failing and failing human hearts

Estigoy, Colleen; Pontén, Fredrik; Odeberg, Jacob; Guilhaus, Michael et al.

Ingår i Biophysical Reviews, s. 43-49, 2009

• DOI för Intercalated discs: multiple proteins perform multiple functions in non-failing and failing human hearts

Prognostic impact of tumour-specific HMG-CoA reductase expression in primary breast cancer

Borgquist, Signe; Jögi, Annika; Pontén, Fredrik; Rydén, Lisa et al.

Ingår i Breast Cancer Research, 2008

• DOI för Prognostic impact of tumour-specific HMG-CoA reductase expression in primary breast cancer

Serological and immunohistochemical analysis of S100 and derivatives as markers for prognosis of newly operated malignant melanoma patients

Bolander, Åsa; Agnarsdóttir, Margrét; Wagenius, Gunnar; Strömberg, Sara et al.

Ingår i Melanoma research, s. 412-419, 2008

• DOI för Serological and immunohistochemical analysis of S100 and derivatives as markers for prognosis of newly operated malignant melanoma patients

A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

Pielberg, Gerli Rosengren; Golovko, Anna; Sundström, Elisabeth; Curik, Ino et al.

Ingår i Nature Genetics, s. 1004-1009, 2008

• DOI för A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

The correlation between cellular size and protein expression levels--normalization for global protein profiling

Lundberg, Emma; Gry, Marcus; Oksvold, Per; Kononen, Juha et al.

Ingår i Journal of proteomics, s. 448-460, 2008

• DOI för The correlation between cellular size and protein expression levels--normalization for global protein profiling

Evaluation of monospecific antibodies: a comparison study with commercial analogs using immunohistochemistry on tissue microarrays

Paavilainen, Linda; Wernérus, Henrik; Nilsson, Peter; Uhlén, Mathias et al.

Ingår i Applied immunohistochemistry & molecular morphology (Print), s. 493-502, 2008

• DOI för Evaluation of monospecific antibodies: a comparison study with commercial analogs using immunohistochemistry on tissue microarrays

HMG-CoA reductase expression in breast cancer is associated with a less aggressive phenotype and influenced by anthropometric factors

Borgquist, Signe; Djerbi, Soraya; Pontén, Fredrik; Anagnostaki, Lola et al.

Ingår i International Journal of Cancer, s. 1146-53, 2008

• DOI för HMG-CoA reductase expression in breast cancer is associated with a less aggressive phenotype and influenced by anthropometric factors

Expression profiling of microdissected cell populations selected from basal cells in normal epidermis and basal cell carcinoma

Asplund, Anna; Gry Björklund, M.; Sundquist, C.; Strömberg, Sara et al.

Ingår i British Journal of Dermatology, s. 527-38, 2008

• DOI för Expression profiling of microdissected cell populations selected from basal cells in normal epidermis and basal cell carcinoma

A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues

Björling, Erik; Lindskog, Cecilia; Oksvold, Per; Linné, Jerker et al.

Ingår i Molecular & Cellular Proteomics, s. 825-844, 2008

• DOI för A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues

The protein expression of TRP-1 and galectin-1 in cutaneous malignant melanomas

Bolander, Åsa; Agnarsdóttir, Margrét; Strömberg, Sara; Pontén, Fredrik et al.

Ingår i Cancer Genomics & Proteomics, s. 293-300, 2008

Toward a confocal subcellular atlas of the human proteome

Barbe, Laurent; Lundberg, Emma; Oksvold, Per; Stenius, Anna et al.

Ingår i Molecular & Cellular Proteomics, s. 499-508, 2008

• DOI för Toward a confocal subcellular atlas of the human proteome

The Human Protein Atlas: a tool for pathology

Pontén, Fredrik; Jirström, K.; Uhlen, M.

Ingår i Journal of Pathology, s. 387-93, 2008

• DOI för The Human Protein Atlas: a tool for pathology

Transcriptional profiling of melanocytes from patients with vitiligo vulgaris

Strömberg, Sara; Gry Björklund, Marcus; Asplund, Anna; Rimini, Rebecca et al.

Ingår i Pigment Cell and Melanoma Research, s. 162-171, 2008

• DOI för Transcriptional profiling of melanocytes from patients with vitiligo vulgaris

A high-throughput strategy for protein profiling in cell microarrays using automated image analysis

Strömberg, Sara; Gry Björklund, Marcus; Asplund, Caroline; Sköllermo, Anna et al.

Ingår i Proteomics, s. 2142-2150, 2007

• DOI för A high-throughput strategy for protein profiling in cell microarrays using automated image analysis

In Situ Identification of Genes Regulated Specifically in Fibroblasts of Human Basal Cell Carcinoma

Micke, Patrick; Kappert, Kai; Ohshima, Mitsuhiro; Sundquist, Christina et al.

Ingår i Journal of Investigative Dermatology, s. 1516-1523, 2007

• DOI för In Situ Identification of Genes Regulated Specifically in Fibroblasts of Human Basal Cell Carcinoma

Sox10 Has a Broad Expression Pattern in Gliomas and Enhances Platelet-Derived Growth Factor-B–Induced Gliomagenesis

Ferletta, Maria; Uhrbom, Lene; Olofsson, Tommie; Pontén, Fredrik et al.

Ingår i Molecular Cancer Research, s. 891-897, 2007

• DOI för Sox10 Has a Broad Expression Pattern in Gliomas and Enhances Platelet-Derived Growth Factor-B–Induced Gliomagenesis

The RBCC Gene RFP2 (Leu5) Encodes a Novel Transmembrane E3 Ubiquitin Ligase Involved in ERAD

Lerner, Mikael; Corcoran, Martin; Cepeda, Diana; Nielsen, Michael L. et al.

Ingår i Molecular Biology of the Cell, s. 1670-1682, 2007

• DOI för The RBCC Gene RFP2 (Leu5) Encodes a Novel Transmembrane E3 Ubiquitin Ligase Involved in ERAD

Systematically generated antibodies against human gene products: High throughput screening on sections from the rat nervous system

Mulder, J; Wernérus, H; Shi, T-J; Pontén, Fredrik et al.

Ingår i Neuroscience, s. 1689-1703, 2007

• DOI för Systematically generated antibodies against human gene products: High throughput screening on sections from the rat nervous system

Biobanking of fresh frozen tissue: RNA is stable in nonfixed surgical specimens.

Micke, Patrick; Ohshima, Mitsuhiro; Tahmasebpoor, Simin; Ren, Zhi-Ping et al.

Ingår i Lab Invest, s. 202-11, 2006

Analysis of protein expression in cell microarrays: A tool for antibody-based proteomics

Andersson, Ann-Catrin; Strömberg, Sara; Bäckvall, Helena; Kampf, Caroline et al.

Ingår i Journal of Histochemistry and Cytochemistry, s. 1413-1423, 2006

• DOI för Analysis of protein expression in cell microarrays: A tool for antibody-based proteomics

From gene expression analysis to tissue microarrays: a rational approach to identify therapeutic and diagnostic targets in lymphoid malignancies.

Ek, Sara; Andréasson, Ulrika; Hober, Sophia; Kampf, Caroline et al.

Ingår i Mol Cell Proteomics, s. 1072-81, 2006

Effect of herbal melanin on IL-8: a possible role of Toll-like receptor 4 (TLR4).

El-Obeid, Adila; Hassib, Adil; Pontén, Fredrik; Westermark, Bengt

Ingår i Biochem Biophys Res Commun, s. 1200-6, 2006

Towards a human proteome atlas: high-throughput generation of mono-specific antibodies for tissue profiling

Nilsson, Peter; Paavilainen, Linda; Larsson, Karin; Ödling, Jenny et al.

Ingår i Proteomics, s. 4327-4337, 2005

• DOI för Towards a human proteome atlas: high-throughput generation of mono-specific antibodies for tissue profiling

A human protein atlas for normal and cancer tissues based on antibody proteomics

Uhlen, Mathias; Bjorling, Erik; Agaton, Charlotta; Szigyarto, Cristina Al-Khalili et al.

Ingår i Molecular & Cellular Proteomics, s. 1920-1932, 2005

• DOI för A human protein atlas for normal and cancer tissues based on antibody proteomics

Laser-assisted cell microdissection using the PALM system.

Micke, Patrick; Östman, Arne; Lundeberg, Joakim; Ponten, Fredrik

Ingår i Methods Mol Biol, s. 151-66, 2005

Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays

Rada-Iglesias, Alvaro; Wallerman, Ola; Koch, Christoph; Ameur, Adam et al.

Ingår i Human Molecular Genetics, s. 3435-3447, 2005

• DOI för Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays

Genetic tumor archeology: microdissection and genetic heterogeneity in squamous and basal cell carcinoma.

Bäckvall, Helena; Asplund, Anna; Gustafsson, Anna; Sivertsson, Asa et al.

Ingår i Mutat Res, s. 65-79, 2005

Antibody-based proteomics for human tissue profiling.

Uhlen, Mathias; Ponten, Fredrik

Ingår i Mol Cell Proteomics, s. 384-93, 2005

A fluid cover medium provides superior morphology and preserves RNA integrity in tissue sections for laser microdissection and pressure catapulting

Micke, Patrick; Bjørnsen, Tone; Scheidl, Stefan; Strömberg, Sara et al.

Ingår i J Pathol, s. 130-8, 2004

The role of p53 codon 72 and human papilloma virus status of cutaneous squamous cell carcinoma in the Swedish population.

Gustafsson, Anna C; Ren, Zhi-Ping; Asplund, Anna; Pontén, Fredrik et al.

Ingår i Acta Derm Venereol, s. 439-44, 2004

Antibody-based tissue profiling as a tool for clinical proteomics

Kampf, Caroline; Andersson, Ann-Catrin; Wester, Kenneth; Björling, Erik et al.

Ingår i Clinical Proteomics, s. 285-299, 2004

Zinc-based fixative improves preservation of genomic DNA and proteins in histoprocessing of human tissues.

Wester, Kenneth; Asplund, Anna; Bäckvall, Helena; Micke, Patrick et al.

Ingår i Lab Invest, s. 889-99, 2003

Enhanced epidermal ultraviolet responses in chronically sun-exposed skinare dependent on previous sun exposure.

Wassberg, C; Backvall, H; Diffey, B; Ponten, F et al.

Ingår i Acta Derm Venereol, s. 254, 2003

Similar UV responses are seen in a skin organ culture as in human skin in vivo

Bäckvall, Helena; Wassberg, Cecilia; Berne, Berit; Pontén, Fredrik

Ingår i Experimental dermatology, s. 349-356, 2002

• DOI för Similar UV responses are seen in a skin organ culture as in human skin in vivo

Rapid increase in diagnosis of cutaneous melanoma in situ in Sweden 1968-1992

Thörn, Magnus; Pontén, Fredrik; Johansson, Anna-Maria; Bergström, Reinhold

Ingår i Cancer Detect Prev, s. 430-437, 1998

Reconstruction of the two-dimensional distribution of p53 positive staining patches in sun-exposed morphologically normal skin

Ren, Z-P; Pontén, F; Nistér, M; Pontén, J

Ingår i Int J Oncol, s. 111-115, 1997

Elevated levels of the human endogenous retrovirus ERV3 in human sebaceous glands

Andersson, Ann-Catrin; Merza, Malik; Venables, Patrick JW; Pontén, Fredrik et al.

Ingår i Journal of Investigative Dermatology, s. 125-128, 1996

• DOI för Elevated levels of the human endogenous retrovirus ERV3 in human sebaceous glands

Two distinct p53 immunohistochemical patterns in human squamous-cell skin cancer, precursors and normal epidermis

Ren, Z-P; Pontén, F; Nistér, M; Pontén, J

Ingår i Int J Cancer, s. 174-179, 1996

Transcriptomics resources of human tissues and organs

Uhlen, Mathias; Hallstrom, Bjorn M.; Lindskog Bergström, Cecilia; Mardinoglu, Adil et al.

Ingår i Molecular Systems Biology, 2016

• DOI för Transcriptomics resources of human tissues and organs
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Garbage in, garbage out: A critical evaluation of strategies used for validation of immunohistochemical biomarkers

O'Hurley, Gillian; Sjöstedt, Evelina; Rahman, Arman; Li, Bo et al.

Ingår i Molecular Oncology, s. 783-798, 2014

• DOI för Garbage in, garbage out: A critical evaluation of strategies used for validation of immunohistochemical biomarkers

Heart Research Advances Using Database Search Engines, Human Protein Atlas and the Sydney Heart Bank

Li, Amy; Estigoy, Colleen; Raftery, Mark; Cameron, Darryl et al.

Ingår i Heart, Lung and Circulation, s. 819-826, 2013

• DOI för Heart Research Advances Using Database Search Engines, Human Protein Atlas and the Sydney Heart Bank

The interactome of LIM domain proteins: The contributions of LIM domain proteins to heart failure and heart development

Li, Amy; Pontén, Fredrik; dos Remedios, Cristobal G.

Ingår i Proteomics, s. 203-225, 2012

• DOI för The interactome of LIM domain proteins: The contributions of LIM domain proteins to heart failure and heart development

Antibodies for profiling the human proteome: The Human Protein Atlas as a resource for cancer research

Asplund, Anna; Edqvist, Per-Henrik D; Schwenk, Jochen M; Pontén, Fredrik

Ingår i Proteomics, s. 2067-2077, 2012

• DOI för Antibodies for profiling the human proteome: The Human Protein Atlas as a resource for cancer research

The Human Protein Atlas as a proteomic resource for biomarker discovery

Pontén, Fredrik; Schwenk, J. M.; Asplund, Anna; Edqvist, Per-Henrik D.

Ingår i Journal of Internal Medicine, s. 428-446, 2011

• DOI för The Human Protein Atlas as a proteomic resource for biomarker discovery

Antibody-based proteomics: fast-tracking molecular diagnostics in oncology

Brennan, Donal J.; O'Connor, Darran P.; Rexhepaj, Elton; Pontén, Fredrik et al.

Ingår i Nature Reviews. Cancer, s. 605-617, 2010

• DOI för Antibody-based proteomics: fast-tracking molecular diagnostics in oncology

Profiling protein expression and interactions: proximity ligation as a tool for personalized medicine

Blokzijl, Andries; Friedman, Mikaela; Pontén, Fredrik; Landegren, Ulf

Ingår i Journal of Internal Medicine, s. 232-245, 2010

• DOI för Profiling protein expression and interactions: proximity ligation as a tool for personalized medicine

Approaching clinical proteomics: current state and future fields of application in cellular proteomics

Apweiler, Rolf; Aslanidis, Charalampos; Deufel, Thomas; Gerstner, Andreas et al.

Ingår i Cytometry. Part A : the journal of the International Society for Analytical Cytology, s. 816-832, 2009

• DOI för Approaching clinical proteomics: current state and future fields of application in cellular proteomics

Approaching clinical proteomics: current state and future fields of application in fluid proteomics

Apweiler, Rolf; Aslanidis, Charalampos; Deufel, Thomas; Gerstner, Andreas et al.

Ingår i Clinical Chemistry and Laboratory Medicine, s. 724-744, 2009

• DOI för Approaching clinical proteomics: current state and future fields of application in fluid proteomics

A genecentric Human Protein Atlas for expression profiles based on antibodies

Berglund, Lisa; Björling, Erik; Oksvold, Per; Fagerberg, Linn et al.

Ingår i Molecular & Cellular Proteomics, s. 2019-2027, 2008

• DOI för A genecentric Human Protein Atlas for expression profiles based on antibodies

Antibody Validation for Estrogen Receptor Beta

Birgersson, Madeleine; Katona, Borbala; Lindskog, Cecilia; Pontén, Fredrik et al.

Ingår i Estrogen Receptors. Methods in Molecular Biology, s. 1-23, Springer Nature, 2022

• DOI för Antibody Validation for Estrogen Receptor Beta

Prognostic significance of SATB1 expression in metastatic colorectal cancer: A Nordic prospective cohort study.

Siesing, Christina; Sorbye, Halfdan; Dragomir, Anca; Pfeiffer, Per et al.

Ingår i ASCO 2018 Gastrointestinal Cancers Symposium, s. 707-707, 2018

• DOI för Prognostic significance of SATB1 expression in metastatic colorectal cancer: A Nordic prospective cohort study.

Expression of podocalyxin-like protein and epidermal growth factor receptor in metastatic colorectal cancer: Prognostic impact and relationship with response to cetuximab.

Larsson, Anna; Karnevi, Emelie; Nodin, Bjorn; Sorbye, Halfdan et al.

2018

Automated Analysis of Human Protein Atlas Immunofluorescence Images

Newberg, Justin Y; Li, Jieyue; Rao, Arvind; Pontén, Fredrik et al.

Ingår i 2009 IEEE International Symposium on Biomedical Imaging, s. 1023-1026, 2009

• DOI för Automated Analysis of Human Protein Atlas Immunofluorescence Images

Angiogenesis as a risk factor for young women with breast cancer

Magnusson, Kristina; Fredholm, Hanna; Georganaki, Maria; Uhlén, Mathias et al.

Extending the immune phenotypes of lung cancer: Oasis in the desert

Backman, Max; La Fleur, Linnea; Kurppa, Pinja; Djureinovic, Dijana et al.

Prognostic whole-genome and transcriptome signatures in colorectal cancers

Nunes, Luís; Li, Fuqiang; Wu, Meizhen; Luo, Tian et al.