Måns Ehrenberg

Dynamics of release factor recycling during translation termination in bacteria

Prabhakar, Arjun; Pavlov, Michael Y.; Zhang, Jingji; Indrisiunaite, Gabriele et al.

Ingår i Nucleic Acids Research, s. 5774-5790, 2023

• DOI för Dynamics of release factor recycling during translation termination in bacteria
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Uncovering translation roadblocks during the development of a synthetic tRNA

Prabhakar, Arjun; Krahn, Natalie; Zhang, Jingji; Vargas-Rodriguez, Oscar et al.

Ingår i Nucleic Acids Research, s. 10201-10211, 2022

• DOI för Uncovering translation roadblocks during the development of a synthetic tRNA
• Ladda ner fulltext (pdf) av Uncovering translation roadblocks during the development of a synthetic tRNA

N-6-Methyladenosines in mRNAs reduce the accuracy of codon reading by transfer RNAs and peptide release factors

Ieong, Ka-Weng; Indrisiunaite, Gabriele; Prabhakar, Arjun; Puglisi, Joseph D. et al.

Ingår i Nucleic Acids Research, s. 2684-2699, 2021

• DOI för N-6-Methyladenosines in mRNAs reduce the accuracy of codon reading by transfer RNAs and peptide release factors
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Estimation of peptide elongation times from ribosome profiling spectra

Pavlov, Michael; Ullman, Gustaf; Ignatova, Zoya; Ehrenberg, Måns

Ingår i Nucleic Acids Research, s. 5124-5142, 2021

• DOI för Estimation of peptide elongation times from ribosome profiling spectra
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The mechanism of error induction by the antibiotic viomycin provides insight into the fidelity mechanism of translation

Holm, Mikael; Mandava, Chandra Sekhar; Ehrenberg, Måns; Sanyal, Suparna

Ingår i eLIFE, 2019

• DOI för The mechanism of error induction by the antibiotic viomycin provides insight into the fidelity mechanism of translation
• Ladda ner fulltext (pdf) av The mechanism of error induction by the antibiotic viomycin provides insight into the fidelity mechanism of translation

Dynamics of release factor recycling during translation termination in bacteria

Prabhakar, Arjun; Pavlov, Michael Y.; Zhang, Jingji; Indrisiunaite, Gabriele et al.

Ingår i Nucleic Acids Research, s. 5774-5790, 2023

• DOI för Dynamics of release factor recycling during translation termination in bacteria
• Ladda ner fulltext (pdf) av Dynamics of release factor recycling during translation termination in bacteria

Uncovering translation roadblocks during the development of a synthetic tRNA

Prabhakar, Arjun; Krahn, Natalie; Zhang, Jingji; Vargas-Rodriguez, Oscar et al.

Ingår i Nucleic Acids Research, s. 10201-10211, 2022

• DOI för Uncovering translation roadblocks during the development of a synthetic tRNA
• Ladda ner fulltext (pdf) av Uncovering translation roadblocks during the development of a synthetic tRNA

N-6-Methyladenosines in mRNAs reduce the accuracy of codon reading by transfer RNAs and peptide release factors

Ieong, Ka-Weng; Indrisiunaite, Gabriele; Prabhakar, Arjun; Puglisi, Joseph D. et al.

Ingår i Nucleic Acids Research, s. 2684-2699, 2021

• DOI för N-6-Methyladenosines in mRNAs reduce the accuracy of codon reading by transfer RNAs and peptide release factors
• Ladda ner fulltext (pdf) av N-6-Methyladenosines in mRNAs reduce the accuracy of codon reading by transfer RNAs and peptide release factors

Estimation of peptide elongation times from ribosome profiling spectra

Pavlov, Michael; Ullman, Gustaf; Ignatova, Zoya; Ehrenberg, Måns

Ingår i Nucleic Acids Research, s. 5124-5142, 2021

• DOI för Estimation of peptide elongation times from ribosome profiling spectra
• Ladda ner fulltext (pdf) av Estimation of peptide elongation times from ribosome profiling spectra

The mechanism of error induction by the antibiotic viomycin provides insight into the fidelity mechanism of translation

Holm, Mikael; Mandava, Chandra Sekhar; Ehrenberg, Måns; Sanyal, Suparna

Ingår i eLIFE, 2019

• DOI för The mechanism of error induction by the antibiotic viomycin provides insight into the fidelity mechanism of translation
• Ladda ner fulltext (pdf) av The mechanism of error induction by the antibiotic viomycin provides insight into the fidelity mechanism of translation

The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy

Fu, Ziao; Indrisiunaite, Gabriele; Kaledhonkar, Sandip; Shah, Binita et al.

Ingår i Nature Communications, 2019

• DOI för The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy
• Ladda ner fulltext (pdf) av The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy

Reiterative Synthesis by the Ribosome and Recognition of the N-Terminal Formyl Group by Biosynthetic Machinery Contribute to Evolutionary Conservation of the Length of Antibiotic Microcin C Peptide Precursor

Zukher, Inna; Pavlov, Michael; Tsibulskaya, Darya; Kulikovsky, Alexey et al.

Ingår i mBio, 2019

• DOI för Reiterative Synthesis by the Ribosome and Recognition of the N-Terminal Formyl Group by Biosynthetic Machinery Contribute to Evolutionary Conservation of the Length of Antibiotic Microcin C Peptide Precursor
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Accuracy of genetic code translation and its orthogonal corruption by aminoglycosides and Mg2+ ions

Zhang, Jingji; Pavlov, Michael; Ehrenberg, Måns

Ingår i Nucleic Acids Research, s. 1362-1374, 2018

• DOI för Accuracy of genetic code translation and its orthogonal corruption by aminoglycosides and Mg2+ ions
• Ladda ner fulltext (pdf) av Accuracy of genetic code translation and its orthogonal corruption by aminoglycosides and Mg2+ ions

2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation

Choi, Junhong; Indrisiunaite, Gabriele; DeMirci, Hasan; Leong, Ka-Weng et al.

Ingår i Nature Structural & Molecular Biology, s. 208-216, 2018

• DOI för 2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation

Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-Tu(H84A)

Fislage, Marcus; Zhang, Jingji; Brown, Zuben Patrick; Mandava, Chandra Sekhar et al.

Ingår i Nucleic Acids Research, s. 5861-5874, 2018

• DOI för Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-Tu(H84A)
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The Structural Basis for Initiation Factor 2 Activation during Translation Initiation

Caban, Kelvin; Pavlov, Michael; Kaledhonkar, Sandip; Fu, Ziao et al.

Ingår i Biophysical Journal, 2018

How 2 '-O-Methylation in mRNA Disrupts tRNA Decoding during Translation Elongation

Choi, Junhong; Indrisiunaite, Gabriele; DeMirci, Hasan; Ieong, Ka-Weng et al.

Ingår i Biophysical Journal, 2018

Transcriptional accuracy modeling suggests two-step proofreading by RNA polymerase

Mellenius, Harriet; Ehrenberg, Måns

Ingår i Nucleic Acids Research, s. 11582-11593, 2017

• DOI för Transcriptional accuracy modeling suggests two-step proofreading by RNA polymerase
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A conformational switch in initiation factor 2 controls the fidelity of translation initiation in bacteria

Caban, Kelvin; Pavlov, Michael; Ehrenberg, Måns; Gonzalez, Ruben L.

Ingår i Nature Communications, 2017

• DOI för A conformational switch in initiation factor 2 controls the fidelity of translation initiation in bacteria
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Ribosomes are optimized for autocatalytic production

Reuveni, Shlomi; Ehrenberg, Måns; Paulsson, Johan

Ingår i Nature, s. 293-297, 2017

• DOI för Ribosomes are optimized for autocatalytic production

Two proofreading steps amplify the accuracy of genetic code translation

Ieong, Ka-Weng; Uzun, Ülkü; Selmer, Maria; Ehrenberg, Måns

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 13744-13749, 2016

• DOI för Two proofreading steps amplify the accuracy of genetic code translation

Complete kinetic mechanism for recycling of the bacterial ribosome

Borg, Anneli; Pavlov, Michael; Ehrenberg, Måns

Ingår i RNA, s. 10-21, 2016

• DOI för Complete kinetic mechanism for recycling of the bacterial ribosome

Key Intermediates in Ribosome Recycling Visualized by Time-Resolved Cryoelectron Microscopy

Fu, Ziao; Kaledhonkar, Sandip; Borg, Anneli; Sun, Ming et al.

Ingår i Structure, s. 2092-2101, 2016

• DOI för Key Intermediates in Ribosome Recycling Visualized by Time-Resolved Cryoelectron Microscopy

N-6-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics

Choi, Junhong; Ieong, Ka-Weng; Demirci, Hasan; Chen, Jin et al.

Ingår i Nature Structural & Molecular Biology, s. 110-+, 2016

• DOI för N-6-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics

Proofreading neutralizes potential error hotspots in genetic code translation by transfer RNAs

Zhang, Jingji; Ieong, Ka-Weng; Mellenius, Harriet; Ehrenberg, Måns

Ingår i RNA, s. 896-904, 2016

• DOI för Proofreading neutralizes potential error hotspots in genetic code translation by transfer RNAs
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Mechanism of fusidic acid inhibition of RRF- and EF-G-dependent splitting of the bacterial post-termination ribosome

Borg, Anneli; Pavlov, Michael; Ehrenberg, Måns

Ingår i Nucleic Acids Research, s. 3264-3275, 2016

• DOI för Mechanism of fusidic acid inhibition of RRF- and EF-G-dependent splitting of the bacterial post-termination ribosome
• Ladda ner fulltext (pdf) av Mechanism of fusidic acid inhibition of RRF- and EF-G-dependent splitting of the bacterial post-termination ribosome

Molecular mechanism of viomycin inhibition of peptide elongation in bacteria

Holm, Mikael; Borg, Anneli; Ehrenberg, Måns; Sanyal, Suparna

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 978-983, 2016

• DOI för Molecular mechanism of viomycin inhibition of peptide elongation in bacteria

On the pH Dependence of Class-1 RF-Dependent Termination of mRNA Translation

Indrisiunaite, Gabriele; Pavlov, Michael Y.; Heurgue-Hamard, Valerie; Ehrenberg, Måns

Ingår i Journal of Molecular Biology, s. 1848-1860, 2015

• DOI för On the pH Dependence of Class-1 RF-Dependent Termination of mRNA Translation
• Ladda ner fulltext (pdf) av On the pH Dependence of Class-1 RF-Dependent Termination of mRNA Translation

DNA Template Dependent Accuracy Variation of Nucleotide Selection in Transcription

Mellenius, Harriet; Ehrenberg, Måns

Ingår i PLOS ONE, 2015

• DOI för DNA Template Dependent Accuracy Variation of Nucleotide Selection in Transcription
• Ladda ner fulltext (pdf) av DNA Template Dependent Accuracy Variation of Nucleotide Selection in Transcription

Fusidic Acid Targets Elongation Factor G in Several Stages of Translocation on the Bacterial Ribosome

Borg, Anneli; Holm, Mikael; Shiroyama, Ikue; Hauryliuk, Vasili et al.

Ingår i Journal of Biological Chemistry, s. 3440-3454, 2015

• DOI för Fusidic Acid Targets Elongation Factor G in Several Stages of Translocation on the Bacterial Ribosome

Determinants of the Rate of mRNA Translocation in Bacterial Protein Synthesis

Borg, Anneli; Ehrenberg, Måns

Ingår i Journal of Molecular Biology, s. 1835-1847, 2015

• DOI för Determinants of the Rate of mRNA Translocation in Bacterial Protein Synthesis
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Accuracy of initial codon selection by aminoacyl-tRNAs on the mRNA-programmed bacterial ribosome

Zhang, Jingji; Ieong, Ka-Weng; Johansson, Magnus; Ehrenberg, Måns

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 9602-9607, 2015

• DOI för Accuracy of initial codon selection by aminoacyl-tRNAs on the mRNA-programmed bacterial ribosome
• Ladda ner fulltext (pdf) av Accuracy of initial codon selection by aminoacyl-tRNAs on the mRNA-programmed bacterial ribosome

Free RNA polymerase in Escherichia coli

Patrick, Michael; Dennis, Patrick P.; Ehrenberg, Måns; Bremer, Hans

Ingår i Biochimie, s. 80-91, 2015

• DOI för Free RNA polymerase in Escherichia coli

Peptide Formation by N-Methyl Amino Acids in Translation Is Hastened by Higher pH and tRNA^Pro

Wang, Jinfan; Kwiatkowski, Marek; Pavlov, Michael Yu; Ehrenberg, Måns et al.

Ingår i ACS Chemical Biology, s. 1303-1311, 2014

• DOI för Peptide Formation by N-Methyl Amino Acids in Translation Is Hastened by Higher pH and tRNA^Pro

Thermodynamic Modeling of Variations in the Rate of RNA Chain Elongation of E-coli rrn Operons

Fange, David; Mellenius, Harriet; Dennis, Patrick P.; Ehrenberg, Måns

Ingår i Biophysical Journal, s. 55-64, 2014

• DOI för Thermodynamic Modeling of Variations in the Rate of RNA Chain Elongation of E-coli rrn Operons

A tRNA body with high affinity for EF-Tu hastens ribosomal incorporation of unnatural amino acids

Ieong, Ka-Weng; Pavlov, Michael Y.; Kwiatkowski, Marek; Ehrenberg, Måns et al.

Ingår i RNA, s. 632-643, 2014

• DOI för A tRNA body with high affinity for EF-Tu hastens ribosomal incorporation of unnatural amino acids
• Ladda ner fulltext (pdf) av A tRNA body with high affinity for EF-Tu hastens ribosomal incorporation of unnatural amino acids

The Impact of Aminoglycosides on the Dynamics of Translation Elongation

Tsai, Albert; Uemura, Sotaro; Johansson, Magnus; Puglisi, Elisabetta Viani et al.

Ingår i Cell Reports, s. 497-508, 2013

• DOI för The Impact of Aminoglycosides on the Dynamics of Translation Elongation

Optimal control of gene expression for fast proteome adaptation to environmental change

Pavlov, Michael Y.; Ehrenberg, Måns

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 20527-20532, 2013

• DOI för Optimal control of gene expression for fast proteome adaptation to environmental change

Optimal Strategy for Rapid Proteome Re-Arrangements in Bacterial Populations

Ehrenberg, Måns; Pavlov, Michael Yu

Ingår i Biophysical Journal, 2013

• DOI för Optimal Strategy for Rapid Proteome Re-Arrangements in Bacterial Populations

Cryo-EM visualization of the ribosome in termination complex with apo-RF3 and RF1

Pallesen, Jesper; Hashem, Yaser; Korkmaz, Gürkan; Koripella, Ravi Kiran et al.

Ingår i eLife, 2013

• DOI för Cryo-EM visualization of the ribosome in termination complex with apo-RF3 and RF1
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Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection

Johansson, Magnus; Zhang, Jingji; Ehrenberg, Måns

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 131-136, 2012

• DOI för Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection

Inefficient delivery but fast peptide bond formation of unnatural l -aminoacyl-tRNAs in translation

Ieong, Ka-Weng; Pavlov, Michael Y.; Kwiatkowski, Marek; Forster, Anthony C. et al.

Ingår i Journal of the American Chemical Society, s. 17955-17962, 2012

• DOI för Inefficient delivery but fast peptide bond formation of unnatural l -aminoacyl-tRNAs in translation

Positive allosteric feedback regulation of the stringent response enzyme RelA by its product

Shyp, Viktoriya; Tankov, Stoyan; Ermakov, Andrey; Kudrin, Pavel et al.

Ingår i EMBO Reports, s. 835-839, 2012

• DOI för Positive allosteric feedback regulation of the stringent response enzyme RelA by its product

Activation of initiation factor 2 by ligands and mutations for rapid docking of ribosomal subunits

Pavlov, Michael Y.; Zorzet, Anna; Andersson, Dan I.; Ehrenberg, Måns

Ingår i EMBO Journal, s. 289-301, 2011

• DOI för Activation of initiation factor 2 by ligands and mutations for rapid docking of ribosomal subunits

pH-sensitivity of the ribosomal peptidyl transfer reaction dependent on the identity of the A-site aminoacyl-tRNA

Johansson, Magnus; Ieong, Ka-Weng; Trobro, Stefan; Strazewski, Peter et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 79-84, 2011

• DOI för pH-sensitivity of the ribosomal peptidyl transfer reaction dependent on the identity of the A-site aminoacyl-tRNA

Comment on "The mechanism for activation of GTP hydrolysis on the ribosome"

Liljas, Anders; Ehrenberg, Måns; Åqvist, Johan

Ingår i Science, s. 37, 2011

• DOI för Comment on "The mechanism for activation of GTP hydrolysis on the ribosome"

Identification of enzyme inhibitory mechanisms from steady-state kinetics

Fange, David; Lovmar, Martin; Pavlov, Michael Y.; Ehrenberg, Måns

Ingår i Biochimie, s. 1623-1629, 2011

• DOI för Identification of enzyme inhibitory mechanisms from steady-state kinetics

Thermodynamic Characterization of ppGpp Binding to EF-G or 1F2 and of Initiator tRNA Binding to Free 1F2 in the Presence of GDP, GTP, or ppGpp

Mitkevich, Vladimir A.; Ermakov, Andrey; Kulikova, Alexandra A.; Tankov, Stoyan et al.

Ingår i Journal of Molecular Biology, s. 838-846, 2010

• DOI för Thermodynamic Characterization of ppGpp Binding to EF-G or 1F2 and of Initiator tRNA Binding to Free 1F2 in the Presence of GDP, GTP, or ppGpp

Protein synthesis: Translocation in slow motion

Ehrenberg, Måns

Ingår i Nature, s. 325-326, 2010

• DOI för Protein synthesis: Translocation in slow motion

Error-prone initiation factor 2 mutations reduce the fitness cost of antibiotic resistance

Zorzet, Anna; Pavlov, Michael; Nilsson, Annika; Ehrenberg, Måns et al.

Ingår i Molecular Microbiology, s. 1299-1313, 2010

• DOI för Error-prone initiation factor 2 mutations reduce the fitness cost of antibiotic resistance
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Ribosomes lacking protein S20 are defective in mRNA binding and subunit association

Tobin, Christina; Mandava, Chandra Sekhar; Ehrenberg, Måns; Andersson, Dan I et al.

Ingår i Journal of Molecular Biology, s. 767-776, 2010

• DOI för Ribosomes lacking protein S20 are defective in mRNA binding and subunit association

Maximum rrn promoter activity in Escherichia coli at saturating concentrations of free RNA polymerase

Ehrenberg, Måns; Dennis, P P; Bremer, H

Ingår i Biochimie, s. 12-20, 2010

• DOI för Maximum rrn promoter activity in Escherichia coli at saturating concentrations of free RNA polymerase

tmRNA-SmpB complex mimics native aminoacyl-tRNAs in the A site of stalled ribosomes.

Cheng, Kimberley; Ivanova, Natalia; Scheres, Sjors H. W.; Pavlov, Michael Y. et al.

Ingår i Journal of Structural Biology, s. 342-348, 2010

• DOI för tmRNA-SmpB complex mimics native aminoacyl-tRNAs in the A site of stalled ribosomes.

Thermodynamics of GTP and GDP Binding to Bacterial Initiation Factor 2 Suggests Two Types of Structural Transitions

Hauryliuk, Vasili; Mitkevich, A; Draycheva, Albena; Tankov, Stoyan et al.

Ingår i Journal of Molecular Biology, s. 621-626, 2009

• DOI för Thermodynamics of GTP and GDP Binding to Bacterial Initiation Factor 2 Suggests Two Types of Structural Transitions

Varying rate of RNA chain elongation during rrn transcription in Escherichia coli.

Dennis, P P; Ehrenberg, Måns; Fange, David; Bremer, H

Ingår i Journal of Bacteriology, s. 3740-3746, 2009

• DOI för Varying rate of RNA chain elongation during rrn transcription in Escherichia coli.

Erythromycin resistance by L4/L22 mutations and resistance masking by drug efflux pump deficiency

Lovmar, Martin; Nilsson, Karin; Lukk, Eliisa; Vimberg, Vladimir et al.

Ingår i EMBO Journal, s. 736-744, 2009

• DOI för Erythromycin resistance by L4/L22 mutations and resistance masking by drug efflux pump deficiency

Slow peptide bond formation by proline and other N-alkylamino acids in translation

Pavlov, Michael Y; Watts, Richard E; Tan, Zhongping; Cornish, Virginia W et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 50-54, 2009

• DOI för Slow peptide bond formation by proline and other N-alkylamino acids in translation

Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis

Villa, Elizabeth; Sengupta, Jayati; Trabuco, Leonardo G.; LeBarron, Jamie et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 1063-1068, 2009

• DOI för Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis

Drug efflux pump deficiency and drug target resistance masking in growing bacteria

Fange, David; Nilsson, Karin; Tenson, Tanel; Ehrenberg, Måns

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 8215-8220, 2009

• DOI för Drug efflux pump deficiency and drug target resistance masking in growing bacteria

Cis-acting resistance peptides reveal dual ribosome inhibitory action of the macrolide josamycin

Lovmar, Martin; Vimberg, Vladimir; Lukk, Eliisa; Nilsson, Karin et al.

Ingår i Biochimie, s. 989-995, 2009

• DOI för Cis-acting resistance peptides reveal dual ribosome inhibitory action of the macrolide josamycin

The kinetics of ribosomal peptidyl transfer revisited

Johansson, Magnus; Bouakaz, Elli; Lovmar, Martin; Ehrenberg, Måns

Ingår i Molecular Cell, s. 589-598, 2008

• DOI för The kinetics of ribosomal peptidyl transfer revisited

Complementary roles of initiation factor 1 and ribosome recycling factor in 70S ribosome splitting

Pavlov, Michael Y; Antoun, Ayman; Lovmar, Martin; Ehrenberg, Måns

Ingår i EMBO Journal, s. 1706-1717, 2008

• DOI för Complementary roles of initiation factor 1 and ribosome recycling factor in 70S ribosome splitting

The pretranslocation ribosome is targeted by GTP-bound EF-G in partially activated form.

Hauryliuk, Vasili; Mitkevich, Vladimir A; Eliseeva, Natalia A; Petrushanko, Irina Yu et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 15678-83, 2008

• DOI för The pretranslocation ribosome is targeted by GTP-bound EF-G in partially activated form.

Co-factor dependent conformational switching of GTPases

Hauryliuk, Vasili; Hansson, Sebastian; Ehrenberg, Måns

Ingår i Biophysical Journal, s. 1704-1715, 2008

• DOI för Co-factor dependent conformational switching of GTPases

Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM

Li, Wen; Agirrezabala, Xabier; Lei, Jianlin; Bouakaz, Lamine et al.

Ingår i EMBO Journal, s. 3322-3331, 2008

• DOI för Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM

The bacterial toxin ReIE induces specific mRNA cleavage in the A site of the eukaryote ribosome

Andreev, Dmitri; Hauryliuk, Vasili; Terenin, Ilya; Dmitriev, Sergey et al.

Ingår i RNA, s. 233-239, 2008

• DOI för The bacterial toxin ReIE induces specific mRNA cleavage in the A site of the eukaryote ribosome

Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits

Gao, Ning; Zavialov, Andrey V.; Ehrenberg, Måns; Frank, Joachim

Ingår i Journal of Molecular Biology, s. 1345-1358, 2007

• DOI för Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits

Structure probing of tmRNA in distinct stages of trans-translation

Ivanova, Natalia; Lindell, Magnus; Pavlov, Michael; Holmberg Schiavone, Lovisa et al.

Ingår i RNA, s. 713-722, 2007

• DOI för Structure probing of tmRNA in distinct stages of trans-translation

RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors

Gao, Haixiao; Zhou, Zhihong; Rawat, Urmila; Huang, Chenhui et al.

Ingår i Cell, s. 929-941, 2007

• DOI för RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors

Bistable bacterial growth rate in response to antibiotics with low membrane permeability

Elf, Johan; Nilsson, Karin; Tenson, Tanel; Ehrenberg, Måns

Ingår i Physical Review Letters, 2006

• DOI för Bistable bacterial growth rate in response to antibiotics with low membrane permeability

How initiation factors tune the rate of initiation of protein synthesis in bacteria.

Antoun, Ayman; Pavlov, Michael Y; Lovmar, Martin; Ehrenberg, Måns

Ingår i EMBO Journal, s. 2539-50, 2006

• DOI för How initiation factors tune the rate of initiation of protein synthesis in bacteria.

Class-1 release factor eRF1 promotes GTP binding by class-2 release factor eRF3

Hauryliuk, Vasili; Zavialov, Andrey; Kisselev, Lev; Ehrenberg, Måns

Ingår i Biochimie, s. 747-757, 2006

• DOI för Class-1 release factor eRF1 promotes GTP binding by class-2 release factor eRF3

Trigger factor binding to ribosomes with nascent peptide chains of varying lengths and sequences

Raine, Amanda; Lovmar, Martin; Wikberg, Jarl; Ehrenberg, Måns

Ingår i Journal of Biological Chemistry, s. 28033-28038, 2006

• DOI för Trigger factor binding to ribosomes with nascent peptide chains of varying lengths and sequences

Rate, accuracy and cost of ribosomes in bacterial cells

Lovmar, Martin; Ehrenberg, Måns

Ingår i Biochimie, s. 951-961, 2006

• DOI för Rate, accuracy and cost of ribosomes in bacterial cells

How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis

Antoun, Ayman; Pavlov, Michael Y.; Lovmar, Martin; Ehrenberg, Måns

Ingår i Molecular Cell, s. 183-193, 2006

• DOI för How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis

The molecular mechanism of peptide-mediated erythromycin resistance.

Lovmar, Martin; Nilsson, Karin; Vimberg, Vladimir; Tenson, Tanel et al.

Ingår i J Biol Chem, s. 6742-50, 2006

Two-step selection of mRNAs in initiation of protein synthesis.

Hauryliuk, Vasili; Ehrenberg, Måns

Ingår i Mol Cell, s. 155-6, 2006

Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM.

Rawat, Urmila; Gao, Haixiao; Zavialov, Andrey; Gursky, Richard et al.

Ingår i J Mol Biol, s. 1144-53, 2006

What makes ribosome-mediated transcriptional attenuation sensitive to amino

Elf, Johan; Ehrenberg, Måns

Ingår i PloS Computational Biology, 2005

Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA.

Ivanova, Natalia; Pavlov, Michael Y; Bouakaz, Elli; Ehrenberg, Måns et al.

Ingår i Nucleic Acids Res, s. 3529-39, 2005

Splitting of the posttermination ribosome into subunits by the concerted action of RRF and EF-G.

Zavialov, Andrey V; Hauryliuk, Vasili V; Ehrenberg, Måns

Ingår i Mol Cell, s. 675-86, 2005

A Time-resolved Investigation of Ribosomal Subunit Association

Hennelly, Scott; Antoun, Ayman; Ehrenberg, Måns; Gualerzi, Claudio et al.

Ingår i Journal of Molecular Biology, s. 1243-1258, 2005

• DOI för A Time-resolved Investigation of Ribosomal Subunit Association

Guanine-nucleotide exchange on ribosome-bound elongation factor G initiates the translocation of tRNAs.

Zavialov, Andrey V; Hauryliuk, Vasili V; Ehrenberg, Måns

Ingår i J Biol, s. 9, 2005

Over expression of a tRNA(Leu) isoacceptor changes charging pattern of leucine tRNAs and reveals new codon reading.

Sörensen, Michael A; Elf, Johan; Bouakaz, Elli; Tenson, Tanel et al.

Ingår i J Mol Biol, s. 16-24, 2005

Selective charging of tRNA isoacceptors induced by amino-acid starvation.

Dittmar, Kimberly A; Sörensen, Michael A; Elf, Johan; Ehrenberg, Måns et al.

Ingår i EMBO Rep, s. 151-7, 2005

Ribosome bypassing at serine codons as a test of the model of selective transfer RNA charging.

Lindsley, Dale; Bonthuis, Paul; Gallant, Jonathan; Tofoleanu, Teodora et al.

Ingår i EMBO Rep, s. 147-50, 2005

Near-critical behavior of aminoacyl-tRNA pools in E. coli at rate-limiting supply of amino acids.

Elf, Johan; Ehrenberg, Måns

Ingår i Biophys J, s. 132-46, 2005

Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.

Gao, Ning; Zavialov, Andrey V; Li, Wen; Sengupta, Jayati et al.

Ingår i Mol Cell, s. 663-74, 2005

tmRNA-induced release of messenger RNA from stalled ribosomes.

Ivanova, Natalia; Pavlov, Michael Y; Ehrenberg, Måns

Ingår i J Mol Biol, s. 897-905, 2005

The cryo-EM structure of a translation initiation complex from Escherichia coli.

Allen, Gregory S; Zavialov, Andrey; Gursky, Richard; Ehrenberg, Måns et al.

Ingår i Cell, s. 703-12, 2005

The SAXS solution structure of RF1 differs from its crystal structure and is similar to its ribosome bound cryo-EM structure.

Vestergaard, Bente; Sanyal, Suparna; Roessle, Manfred; Mora, Liliana et al.

Ingår i Mol Cell, s. 929-38, 2005

Ribosome formation from subunits studied by stopped-flow and Rayleigh light scattering

Antoun, Ayman; Pavlov, Michael; Tenson, Tanel; Ehrenberg, Måns

Ingår i Biol Procedure Online, 2004

Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases

Elf, Johan; Ehrenberg, Måns

Ingår i Systems Biology, s. 230-236, 2004

Dynamics of EF-G interaction with the ribosome explored by classification of a heterogeneous cryo-EM dataset.

Gao, Haixiao; Valle, Mikel; Ehrenberg, Måns; Frank, Joachim

Ingår i J Struct Biol, s. 283-90, 2004

Simultaneous binding of trigger factor and signal recognition particle to the E. coli ribosome.

Raine, Amanda; Ivanova, Natalia; Wikberg, Jarl E S; Ehrenberg, Måns

Ingår i Biochimie, s. 495-500, 2004

Kinetics of macrolide action: the josamycin and erythromycin cases.

Lovmar, Martin; Tenson, Tanel; Ehrenberg, Måns

Ingår i J Biol Chem, s. 53506-15, 2004

Ribosome rescue by tmRNA requires truncated mRNAs.

Ivanova, Natalia; Pavlov, Michael Y; Felden, Brice; Ehrenberg, Måns

Ingår i J Mol Biol, s. 33-41, 2004

Pre-binding of small protein B to a stalled ribosome triggers trans-translation.

Hallier, Marc; Ivanova, Natalia; Rametti, Armelle; Pavlov, Michael et al.

Ingår i J Biol Chem, s. 25978-85, 2004

Targeting and insertion of heterologous membrane proteins in E. coli

Raine, A; Ullers, R; Pavlov, M; Luirink, J et al.

Ingår i Biochimie, s. 659-668, 2003

Interplay of signal recognition particle and trigger factor at L23 near the nascent chain exit site on the Escherichia coli ribosome

Ullers, R S; Houben, E N G; Raine, A; ten Hagen-Jongman, C M et al.

Ingår i J. Cell Biology, s. 679-684, 2003

Termination of translation: interplay of mRNA, rRNAs and release factors?

Kisselev, L; Ehrenberg, M; Frolova, L

Ingår i EMBO J., s. 175-182, 2003

Selective loss of charging of tRNA isoacceptors during amino acid limitation.

Elf, Johan; Tenson, Tanel; Ehrenberg, Måns

Ingår i Science, s. 1718-1722, 2003

The mechanism of action of macrolides, lincosamides and streptogramin B reveals the nascent peptide exit path in the ribosome.

Tenson, Tanel; Lovmar, Martin; Ehrenberg, Måns

Ingår i J Mol Biol, s. 1005-14, 2003

A new beginning of the end of translation

Ehrenberg, M; Tenson, T

Ingår i journal, s. 85-87, 2002

Substrate-Induced Formation of Ribosomal Decoding Center for Accurate and Rapid Genetic Code Translation

Pavlov, Michael; Ehrenberg, Måns

Ingår i Annual Review of Biophysics, s. 525-548, 2018

• DOI för Substrate-Induced Formation of Ribosomal Decoding Center for Accurate and Rapid Genetic Code Translation

A recent intermezzo at the Ribosome Club

Pavlov, Michael; Liljas, Anders; Ehrenberg, Måns

Ingår i Philosophical Transactions of the Royal Society of London. Biological Sciences, 2017

• DOI för A recent intermezzo at the Ribosome Club
• Ladda ner fulltext (pdf) av A recent intermezzo at the Ribosome Club

Medium-dependent control of the bacterial growth rate

Ehrenberg, Måns; Bremer, Hans; Dennis, Patrick P.

Ingår i Biochimie, s. 643-658, 2013

• DOI för Medium-dependent control of the bacterial growth rate

Rate and accuracy of bacterial protein synthesis revisited

Johansson, Magnus; Lovmar, Martin; Ehrenberg, Måns

Ingår i Current Opinion in Microbiology, s. 141-147, 2008

• DOI för Rate and accuracy of bacterial protein synthesis revisited

The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer.

Frank, Joachim; Sengupta, Jayati; Gao, Haixiao; Li, Wen et al.

Ingår i FEBS Lett, s. 959-62, 2005

Control of rRNA synthesis in Escherichia coli: a systems biology approach.

Dennis, Patrick P; Ehrenberg, Måns; Bremer, Hans

Ingår i Microbiol Mol Biol Rev, s. 639-68, 2004

A cryo-electron microscopic study of ribosome-bound termination factor RF2

Rawat, Urmila B.S.; Zavialov, Andrey; Sengupta, Jayati; Valle, Mikel et al.

Ingår i Nature, s. 87-90, 2003

Structural aspects of protein synthesis

Liljas, Anders; Ehrenberg, Måns

World Scientific, 2013

Large DNA Template Dependent Error Variation During Transcription

Mellenius, Harriet; Ehrenberg, Måns

Ingår i Biophysics and Structure to Counter Threats and Challenges, s. 39-57, Springer Netherlands, 2014

• DOI för Large DNA Template Dependent Error Variation During Transcription

Translation Termination, the Prion [Psi+], and Ribosomal Recycling

Ehrenberg, Måns; Hauryliuk, Vasili; Crist, Colin G; Nakamura, Yoshikazu

Ingår i Translational Control in Biology and Medicine, s. 173-196, Cold Spring Harbor Laboratory Press, 2007

Mesoscopic kinetics and its applications in protein synthesis

Elf, Johan; Paulsson, Johan; Berg, Otto; Ehrenberg, Måns

Ingår i Systems Biology, s. 95-118, Springer-Verlag GmbH, 2005

• DOI för Mesoscopic kinetics and its applications in protein synthesis

Rate and accuracy of ribosomal peptidyl transfer

Johansson, Magnus; Ieong, Ka-Weng; Pavlov, Michael Y.; Ehrenberg, Måns

Ingår i Ribosomes, s. 225-235, 2011

Initiation of bacterial protein synthesis with wild type and novel mutants of initiation factor

Pavlov, Michael Y.; Sanyal, Suparna; Ehrenberg, Måns

Ingår i Ribosomes, s. 129-141, 2011

A novel mechanism for activator-controlled initiation of DNA replication that resolves the auto-regulation sequestration paradox

Nilsson, Karin; Ehrenberg, Måns

Ingår i ASPECTS OF PHYSICAL BIOLOGY: BIOLOGICAL WATER, PROTEIN SOLUTIONS, TRANSPORT AND REPLICATION, s. 189-213, 2008

• DOI för A novel mechanism for activator-controlled initiation of DNA replication that resolves the auto-regulation sequestration paradox

N⁶-methyladenosines in mRNA have profound effects on the accuracy of codon reading by tRNAs and peptide release factors

Ieong, Ka-Weng; Indrisiunaite, Gabriele; Ehrenberg, Måns