Ida-Maria Sintorn
Professor vid Institutionen för informationsteknologi; Vi3; Bildanalys
- Telefon:
- 018-471 34 61
- E-post:
- ida.sintorn@it.uu.se
- Besöksadress:
- Hus 10, Regementsvägen 10
- Postadress:
- Box 337
751 05 UPPSALA
- Akademiska meriter:
- civ.ing., Docent
Kort presentation
Professor in Computerized image processing, at the Vi3: image analysis division, Department of Information Technology.
Nyckelord
- electron microscopy
- machine learning
- deep learning
- image processing
- maskininlärning
- artifical intelligence
- ai
Biografi
Ida-Maria shares her time between a position as Professor in Computerized image processing at the Vi3 division, Dept. IT, Uppsala University and as CTO at Vironova AB, a biotechnology company offering services and instruments for image based nano-sized particle characterization. She obtained her PhD in computerized image analysis in 2005 from the Centre for Image Analysis, Swedish University of Agricultural Science. She has since then gained industrial as well as academic experience in a variety of image analysis applications working as image analyst at the Mathematical and Information Sciences department of the Commonwealth Scientific and Industrial Research Organization (CSIRO) in Sydney, Australia, as Head of R&D at Vironova AB, and as researcher at both Uppsala University and the Swedish University of Agricultural Sciences.
Forskning
My main area of research and expertise is image analysis focused towards applications in drug development, cellular, virus and nano-sized particle analysis in fluorescence and electron microscopy images.
My theoretical interests are automated microscopy (multi-scale feed back loops steering acqusition), deep learning, feature descriptors (image registration and stiching) and texture analysis (filter banks and local binary patterns)

Publikationer
Senaste publikationer
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Ingår i Scientific Reports, 2026
- DOI för Investigating performance and key factors for real-world deployment of grain image classification using convolutional neural networks
- Ladda ner fulltext (pdf) av Investigating performance and key factors for real-world deployment of grain image classification using convolutional neural networks
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Roadmap on deep learning for microscopy
Ingår i JPhys Photonics, 2026
- DOI för Roadmap on deep learning for microscopy
- Ladda ner fulltext (pdf) av Roadmap on deep learning for microscopy
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Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
Ingår i Pattern Recognition, 2024
- DOI för Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
- Ladda ner fulltext (pdf) av Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
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Classification of rotation-invariant biomedical images using equivariant neural networks
Ingår i Scientific Reports, 2024
- DOI för Classification of rotation-invariant biomedical images using equivariant neural networks
- Ladda ner fulltext (pdf) av Classification of rotation-invariant biomedical images using equivariant neural networks
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Evaluating the utility of brightfield image data for mechanism of action prediction
Ingår i PloS Computational Biology, 2023
- DOI för Evaluating the utility of brightfield image data for mechanism of action prediction
- Ladda ner fulltext (pdf) av Evaluating the utility of brightfield image data for mechanism of action prediction
Alla publikationer
Artiklar i tidskrift
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Ingår i Scientific Reports, 2026
- DOI för Investigating performance and key factors for real-world deployment of grain image classification using convolutional neural networks
- Ladda ner fulltext (pdf) av Investigating performance and key factors for real-world deployment of grain image classification using convolutional neural networks
-
Roadmap on deep learning for microscopy
Ingår i JPhys Photonics, 2026
- DOI för Roadmap on deep learning for microscopy
- Ladda ner fulltext (pdf) av Roadmap on deep learning for microscopy
-
Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
Ingår i Pattern Recognition, 2024
- DOI för Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
- Ladda ner fulltext (pdf) av Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
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Classification of rotation-invariant biomedical images using equivariant neural networks
Ingår i Scientific Reports, 2024
- DOI för Classification of rotation-invariant biomedical images using equivariant neural networks
- Ladda ner fulltext (pdf) av Classification of rotation-invariant biomedical images using equivariant neural networks
-
Evaluating the utility of brightfield image data for mechanism of action prediction
Ingår i PloS Computational Biology, 2023
- DOI för Evaluating the utility of brightfield image data for mechanism of action prediction
- Ladda ner fulltext (pdf) av Evaluating the utility of brightfield image data for mechanism of action prediction
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Ingår i IEEE journal of biomedical and health informatics, s. 4079-4089, 2022
- DOI för SimSearch: A Human-in-The-Loop Learning Framework for Fast Detection of Regions of Interest in Microscopy Images
- Ladda ner fulltext (pdf) av SimSearch: A Human-in-The-Loop Learning Framework for Fast Detection of Regions of Interest in Microscopy Images
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Ingår i PLOS ONE, 2022
- DOI för Assessment of the percentage of full recombinant adeno-associated virus particles in a gene therapy drug using CryoTEM
- Ladda ner fulltext (pdf) av Assessment of the percentage of full recombinant adeno-associated virus particles in a gene therapy drug using CryoTEM
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TEM image restoration from fast image streams
Ingår i PLOS ONE, 2021
- DOI för TEM image restoration from fast image streams
- Ladda ner fulltext (pdf) av TEM image restoration from fast image streams
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Ingår i NeuroImage, s. 102735, 2021
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TEM virus images: Benchmark dataset and deep learning classification
Ingår i Computer Methods and Programs in Biomedicine, 2021
- DOI för TEM virus images: Benchmark dataset and deep learning classification
- Ladda ner fulltext (pdf) av TEM virus images: Benchmark dataset and deep learning classification
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Ingår i GigaScience, s. 1-14, 2021
- DOI för Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit
- Ladda ner fulltext (pdf) av Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit
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Ingår i International journal of imaging systems and technology (Print), s. 327-339, 2020
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Ingår i Communications Biology, 2019
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Facilitating Ultrastructural Pathology through Automated Imaging and Analysis
Ingår i Journal of Pathology Informatics, s. 38-39, 2019
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Reducing the U-Net size for practical scenarios: Virus recognition in electron microscopy images
Ingår i Computer Methods and Programs in Biomedicine, s. 31-39, 2019
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Image-Based Detection of Patient-Specific Drug-Induced Cell-Cycle Effects in Glioblastoma
Ingår i SLAS Discovery, s. 1030-1039, 2018
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Ingår i Pattern Recognition and Image Analysis, s. 261-272, 2018
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A short feature vector for image matching: The Log-Polar Magnitude feature descriptor
Ingår i PLOS ONE, 2017
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ProViz: a tool for explorative 3-D visualization and template matching in electron tomograms
Ingår i COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING-IMAGING AND VISUALIZATION, s. 446-454, 2017
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Mechanochemical Polarization of Contiguous Cell Walls Shapes Plant Pavement Cells
Ingår i Developmental Cell, s. 290-304, 2017
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Case-specific potentiation of glioblastoma drugs by pterostilbene
Ingår i Oncotarget, s. 73200-73215, 2016
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Ingår i Skeletal Radiology, s. 763-769, 2016
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Ingår i PLOS ONE, 2016
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On the influence of interpolation method on rotation invariance in texture recognition
Ingår i EURASIP Journal on Image and Video Processing, 2016
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BoneSplit - A 3D Texture Painting Tool for Interactive Bone Separation in CT Images
Ingår i Journal of WSCG, s. 157-166, 2015
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Ingår i RSC Advances, s. 16405-16413, 2015
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Movement on Uneven Surfaces Displays Characteristic Features of Hop Diffusion
Ingår i Biophysical Journal, 2013
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Evaluation of noise robustness for local binary pattern descriptors in texture classification
Ingår i EURASIP Journal on Image and Video Processing, 2013
- DOI för Evaluation of noise robustness for local binary pattern descriptors in texture classification
- Ladda ner fulltext (pdf) av Evaluation of noise robustness for local binary pattern descriptors in texture classification
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Improving the stochastic watershed
Ingår i Pattern Recognition Letters, s. 993-1000, 2013
- DOI för Improving the stochastic watershed
- Ladda ner fulltext (pdf) av Improving the stochastic watershed
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Segmentation of virus particle candidates in transmission electron microscopy images
Ingår i Journal of Microscopy, s. 140-147, 2012
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Gradient based intensity normalization
Ingår i Journal of Microscopy, s. 249-258, 2010
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Ingår i Computer Methods and Programs in Biomedicine, s. 95-102, 2004
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Weighted distance transforms for volume images digitized in elongated voxel grids
Ingår i Pattern Recognition Letters, s. 571-580, 2004
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Ingår i Journal of Microscopy, s. 67-76, 2004
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Tripeptide Interference with Human Immunodeficiency Virus Type 1 Morphogenesis
Ingår i Antimicrobial Agents and Chemotherapy, s. 3597-3605, 2002
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Artiklar, forskningsöversikt
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Deep Learning in Image Cytometry: A Review
Ingår i Cytometry Part A, s. 366-380, 2019
- DOI för Deep Learning in Image Cytometry: A Review
- Ladda ner fulltext (pdf) av Deep Learning in Image Cytometry: A Review
Dataset
Konferensbidrag
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Towards Better Guided Attention and Human Knowledge Insertion in Deep Convolutional Neural Networks
2022
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Is brightfield all you need for MoA prediction?
2022
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Ingår i Computer Vision, s. 465-475, 2019
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Towards automated multiscale Glomeruli detection and analysis in TEM by fusion of CNN and LBP maps
Ingår i 3rd NEUBIAS Conference, 2019
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Super-resolution Reconstruction of Transmission Electron Microscopy Images using Deep Learning
Ingår i 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), s. 548-551, 2019
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Minimal annotation training for segmentation of microscopy images
Ingår i Proc. 15th International Symposium on Biomedical Imaging, s. 387-390, 2018
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Ingår i Swedish Symposium on Deep Learning, 2018
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Denoising of Short Exposure Transmission Electron Microscopy Images using CNN
Ingår i Swedish Symposium on Image Analysis, 2018
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Denoising of short exposure transmission electron microscopy images for ultrastructural enhancement
Ingår i Proc. 15th International Symposium on Biomedical Imaging, s. 921-925, 2018
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Ingår i Swedish Symposium on Image Analysis, 2017
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Ingår i Swedish Symposium on Image Analysis, 2017
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Ingår i Image Analysis, s. 362-374, 2017
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Ingår i Medical Image Understanding and Analysis, s. 182-194, 2017
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Ingår i Image Analysis, s. 407-418, 2017
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Ingår i Advanced Concepts for Intelligent Vision Systems, s. 723-734, 2017
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Ingår i Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on, s. 386-390, 2016
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Comparison of Flow Cytometry and Image-Based Screening for Cell Cycle Analysis
Ingår i Image Analysis And Recognition (ICIAR 2016), s. 623-630, 2016
- DOI för Comparison of Flow Cytometry and Image-Based Screening for Cell Cycle Analysis
- Ladda ner fulltext (pdf) av Comparison of Flow Cytometry and Image-Based Screening for Cell Cycle Analysis
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High-resolution reconstruction by feature distance minimization from multiple views of an object
Ingår i Proc. 5th International Conference on Image Processing Theory, Tools and Applications, s. 29-34, 2015
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Automated Image Acquisition and Particle Size Distribution in the MiniTEM Instrument
2015
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A Simple and Efficient Feature Descriptor for Fast Matching
Ingår i WSCG, s. 135-142, 2015
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Virus recognition based on local texture
Ingår i Proceedings 22nd International Conference on Pattern Recognition (ICPR), 2014, s. 3227-3232, 2014
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Large-Scale Analysis of Cells and Tissue
2014
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miniTEM - a desk-top TEM for fast and easy image acquisition and analysis
2014
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Ingår i Proceedings, 2014
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MiniTEM - making ultra-structural pathology easier and accessible
2014
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The mini-TEM: high quality imaging and analysis of biological specimen
Ingår i Proceedings, 2014
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A Desk-Top Low voltage TEM for high quality imaging of biological specimen
Ingår i Proceedings, 2014
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Ingår i Proceedings, 2014
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A probabilistic template model for finding macromolecules in MET volume images
Ingår i Pattern Recognition and Image Analysis, s. 855-862, 2013
- DOI för A probabilistic template model for finding macromolecules in MET volume images
- Ladda ner fulltext (pdf) av A probabilistic template model for finding macromolecules in MET volume images
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Precise 3D Angle Measurements in CT Wrist Images
Ingår i Image Analysis and Processing – ICIAP 2013, s. 479-488, 2013
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Towards automated Virus Detection and Identification using TEM
Ingår i Proceedings, Part II, s. 397-398, 2013
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Factors influencing high quality low voltage TEM imaging of biological routinely stained specimen
Ingår i Proceedings, part I, s. 321-322, 2013
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Towards User-Guided Quantitative Evaluation of Wrist Fractures in CT Images
Ingår i Computer Vision and Graphics, s. 204-211, 2012
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Rigid registration for MET image exploration using CUDA
Ingår i Proceedings SSBA 2012, 2012
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Regional Zernike Moments for Texture Recognition
Ingår i Proceedings of the 21st International Conference on Pattern Recognition (ICPR), s. 1635-1638, 2012
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Registration Parameter Spaces for Molecular Electron Tomography Images
Ingår i Image Analysis and Processing – ICIAP 2011, s. 403-412, 2011
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Virus texture analysis using local binary patterns and radial density profiles
Ingår i Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications, s. 573-580, 2011
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Investigating measures for transfer function generation for visualization of MET biomedical data
Ingår i WSCG '2011, s. 113-120, 2011
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Refinement of Segmented Virus Particel Candidates in TEM Images
2011
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Towards Identification of Highly Pathogenic Viruses Based on Image Analysis and TEM
Ingår i TAMSEC 2010, s. 25-25, 2010
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Ingår i Proceedings of the 16th Scandinavian Conference on Image Analysis (SCIA), s. 169-178, 2009
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Ingår i Proc. 6th International Symposium on Image and Signal Processing and Analysis, s. 426-431, 2009
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Detecting Virus-like Particles Using Transmission Electron Microscopy
Ingår i Proceedings SSBA 2009, Symposium on Image Analysis, s. 13-16, 2009
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Medial grey-level based representation for proteins in volume images
Ingår i Pattern Recognition and Image Analysis, s. 421-428, 2005
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Shape based identification of proteins in volume images
Ingår i Image Analysis, s. 253-262, 2005
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Individual pore segmentation in 3D volumes of fibrous materials
Ingår i SSBA Symposium on Image Analysis 2005, 2005
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Using grey-level and shape information for decomposing proteins in 3D images
Ingår i IEEE International, s. 800-803, 2004
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Description, Segmentation and Classification of Human Cytomegalovirus Capsids
Ingår i Proceedings SSAB'02 Symposium on Image Analysis, s. 21-24, 2002
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Weighted distance transforms for images using elongated voxel grids
2002