Ida-Maria Sintorn
Professor at Department of Information Technology; Vi3; Image Analysis
- Telephone:
- +46 18 471 34 61
- E-mail:
- ida.sintorn@it.uu.se
- Visiting address:
- Hus 10, Regementsvägen 10
- Postal address:
- Box 524
751 20 UPPSALA
Vice-dean for collaboration at Disciplinary Domain of Science and Technology
- E-mail:
- ida.sintorn@it.uu.se
Download contact information for Ida-Maria Sintorn at Disciplinary Domain of Science and Technology
- Academic merits:
- Docent
Keywords
- electron microscopy
- machine learning
- deep learning
- image processing
- maskininlärning
- artifical intelligence
- ai

Publications
Recent publications
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Roadmap on deep learning for microscopy
Part of JPhys Photonics, 2026
- DOI for Roadmap on deep learning for microscopy
- Download full text (pdf) of Roadmap on deep learning for microscopy
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Part of Scientific Reports, 2026
- DOI for Investigating performance and key factors for real-world deployment of grain image classification using convolutional neural networks
- Download full text (pdf) of Investigating performance and key factors for real-world deployment of grain image classification using convolutional neural networks
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Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
Part of Pattern Recognition, 2024
- DOI for Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
- Download full text (pdf) of Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
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Classification of rotation-invariant biomedical images using equivariant neural networks
Part of Scientific Reports, 2024
- DOI for Classification of rotation-invariant biomedical images using equivariant neural networks
- Download full text (pdf) of Classification of rotation-invariant biomedical images using equivariant neural networks
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Evaluating the utility of brightfield image data for mechanism of action prediction
Part of PloS Computational Biology, 2023
- DOI for Evaluating the utility of brightfield image data for mechanism of action prediction
- Download full text (pdf) of Evaluating the utility of brightfield image data for mechanism of action prediction
All publications
Articles in journal
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Roadmap on deep learning for microscopy
Part of JPhys Photonics, 2026
- DOI for Roadmap on deep learning for microscopy
- Download full text (pdf) of Roadmap on deep learning for microscopy
-
Part of Scientific Reports, 2026
- DOI for Investigating performance and key factors for real-world deployment of grain image classification using convolutional neural networks
- Download full text (pdf) of Investigating performance and key factors for real-world deployment of grain image classification using convolutional neural networks
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Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
Part of Pattern Recognition, 2024
- DOI for Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
- Download full text (pdf) of Efficient High-Resolution Template Matching with Vector Quantized Nearest Neighbour Fields
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Classification of rotation-invariant biomedical images using equivariant neural networks
Part of Scientific Reports, 2024
- DOI for Classification of rotation-invariant biomedical images using equivariant neural networks
- Download full text (pdf) of Classification of rotation-invariant biomedical images using equivariant neural networks
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Evaluating the utility of brightfield image data for mechanism of action prediction
Part of PloS Computational Biology, 2023
- DOI for Evaluating the utility of brightfield image data for mechanism of action prediction
- Download full text (pdf) of Evaluating the utility of brightfield image data for mechanism of action prediction
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Part of IEEE journal of biomedical and health informatics, p. 4079-4089, 2022
- DOI for SimSearch: A Human-in-The-Loop Learning Framework for Fast Detection of Regions of Interest in Microscopy Images
- Download full text (pdf) of SimSearch: A Human-in-The-Loop Learning Framework for Fast Detection of Regions of Interest in Microscopy Images
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Part of PLOS ONE, 2022
- DOI for Assessment of the percentage of full recombinant adeno-associated virus particles in a gene therapy drug using CryoTEM
- Download full text (pdf) of Assessment of the percentage of full recombinant adeno-associated virus particles in a gene therapy drug using CryoTEM
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TEM image restoration from fast image streams
Part of PLOS ONE, 2021
- DOI for TEM image restoration from fast image streams
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Part of NeuroImage, p. 102735, 2021
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TEM virus images: Benchmark dataset and deep learning classification
Part of Computer Methods and Programs in Biomedicine, 2021
- DOI for TEM virus images: Benchmark dataset and deep learning classification
- Download full text (pdf) of TEM virus images: Benchmark dataset and deep learning classification
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Part of GigaScience, p. 1-14, 2021
- DOI for Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit
- Download full text (pdf) of Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit
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Part of International journal of imaging systems and technology (Print), p. 327-339, 2020
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Part of Communications Biology, 2019
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Facilitating Ultrastructural Pathology through Automated Imaging and Analysis
Part of Journal of Pathology Informatics, p. 38-39, 2019
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Reducing the U-Net size for practical scenarios: Virus recognition in electron microscopy images
Part of Computer Methods and Programs in Biomedicine, p. 31-39, 2019
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Image-Based Detection of Patient-Specific Drug-Induced Cell-Cycle Effects in Glioblastoma
Part of SLAS Discovery, p. 1030-1039, 2018
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Part of Pattern Recognition and Image Analysis, p. 261-272, 2018
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A short feature vector for image matching: The Log-Polar Magnitude feature descriptor
Part of PLOS ONE, 2017
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ProViz: a tool for explorative 3-D visualization and template matching in electron tomograms
Part of COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING-IMAGING AND VISUALIZATION, p. 446-454, 2017
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Mechanochemical Polarization of Contiguous Cell Walls Shapes Plant Pavement Cells
Part of Developmental Cell, p. 290-304, 2017
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Case-specific potentiation of glioblastoma drugs by pterostilbene
Part of Oncotarget, p. 73200-73215, 2016
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Part of Skeletal Radiology, p. 763-769, 2016
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Part of PLOS ONE, 2016
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On the influence of interpolation method on rotation invariance in texture recognition
Part of EURASIP Journal on Image and Video Processing, 2016
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BoneSplit - A 3D Texture Painting Tool for Interactive Bone Separation in CT Images
Part of Journal of WSCG, p. 157-166, 2015
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Part of RSC Advances, p. 16405-16413, 2015
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Movement on Uneven Surfaces Displays Characteristic Features of Hop Diffusion
Part of Biophysical Journal, 2013
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Evaluation of noise robustness for local binary pattern descriptors in texture classification
Part of EURASIP Journal on Image and Video Processing, 2013
- DOI for Evaluation of noise robustness for local binary pattern descriptors in texture classification
- Download full text (pdf) of Evaluation of noise robustness for local binary pattern descriptors in texture classification
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Improving the stochastic watershed
Part of Pattern Recognition Letters, p. 993-1000, 2013
- DOI for Improving the stochastic watershed
- Download full text (pdf) of Improving the stochastic watershed
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Segmentation of virus particle candidates in transmission electron microscopy images
Part of Journal of Microscopy, p. 140-147, 2012
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Gradient based intensity normalization
Part of Journal of Microscopy, p. 249-258, 2010
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Part of Computer Methods and Programs in Biomedicine, p. 95-102, 2004
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Weighted distance transforms for volume images digitized in elongated voxel grids
Part of Pattern Recognition Letters, p. 571-580, 2004
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Part of Journal of Microscopy, p. 67-76, 2004
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Tripeptide Interference with Human Immunodeficiency Virus Type 1 Morphogenesis
Part of Antimicrobial Agents and Chemotherapy, p. 3597-3605, 2002
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Articles, review/survey
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Deep Learning in Image Cytometry: A Review
Part of Cytometry Part A, p. 366-380, 2019
- DOI for Deep Learning in Image Cytometry: A Review
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Conference papers
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Towards Better Guided Attention and Human Knowledge Insertion in Deep Convolutional Neural Networks
2022
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Is brightfield all you need for MoA prediction?
2022
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Part of Computer Vision, p. 465-475, 2019
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Towards automated multiscale Glomeruli detection and analysis in TEM by fusion of CNN and LBP maps
Part of 3rd NEUBIAS Conference, 2019
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Super-resolution Reconstruction of Transmission Electron Microscopy Images using Deep Learning
Part of 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), p. 548-551, 2019
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Minimal annotation training for segmentation of microscopy images
Part of Proc. 15th International Symposium on Biomedical Imaging, p. 387-390, 2018
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Part of Swedish Symposium on Deep Learning, 2018
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Denoising of Short Exposure Transmission Electron Microscopy Images using CNN
Part of Swedish Symposium on Image Analysis, 2018
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Denoising of short exposure transmission electron microscopy images for ultrastructural enhancement
Part of Proc. 15th International Symposium on Biomedical Imaging, p. 921-925, 2018
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Part of Swedish Symposium on Image Analysis, 2017
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Part of Swedish Symposium on Image Analysis, 2017
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Part of Image Analysis, p. 362-374, 2017
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Part of Medical Image Understanding and Analysis, p. 182-194, 2017
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Part of Image Analysis, p. 407-418, 2017
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Part of Advanced Concepts for Intelligent Vision Systems, p. 723-734, 2017
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Part of Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on, p. 386-390, 2016
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Comparison of Flow Cytometry and Image-Based Screening for Cell Cycle Analysis
Part of Image Analysis And Recognition (ICIAR 2016), p. 623-630, 2016
- DOI for Comparison of Flow Cytometry and Image-Based Screening for Cell Cycle Analysis
- Download full text (pdf) of Comparison of Flow Cytometry and Image-Based Screening for Cell Cycle Analysis
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High-resolution reconstruction by feature distance minimization from multiple views of an object
Part of Proc. 5th International Conference on Image Processing Theory, Tools and Applications, p. 29-34, 2015
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Automated Image Acquisition and Particle Size Distribution in the MiniTEM Instrument
2015
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A Simple and Efficient Feature Descriptor for Fast Matching
Part of WSCG, p. 135-142, 2015
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Virus recognition based on local texture
Part of Proceedings 22nd International Conference on Pattern Recognition (ICPR), 2014, p. 3227-3232, 2014
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Large-Scale Analysis of Cells and Tissue
2014
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miniTEM - a desk-top TEM for fast and easy image acquisition and analysis
2014
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Part of Proceedings, 2014
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MiniTEM - making ultra-structural pathology easier and accessible
2014
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The mini-TEM: high quality imaging and analysis of biological specimen
Part of Proceedings, 2014
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A Desk-Top Low voltage TEM for high quality imaging of biological specimen
Part of Proceedings, 2014
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Part of Proceedings, 2014
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A probabilistic template model for finding macromolecules in MET volume images
Part of Pattern Recognition and Image Analysis, p. 855-862, 2013
- DOI for A probabilistic template model for finding macromolecules in MET volume images
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Precise 3D Angle Measurements in CT Wrist Images
Part of Image Analysis and Processing – ICIAP 2013, p. 479-488, 2013
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Towards automated Virus Detection and Identification using TEM
Part of Proceedings, Part II, p. 397-398, 2013
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Factors influencing high quality low voltage TEM imaging of biological routinely stained specimen
Part of Proceedings, part I, p. 321-322, 2013
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Towards User-Guided Quantitative Evaluation of Wrist Fractures in CT Images
Part of Computer Vision and Graphics, p. 204-211, 2012
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Rigid registration for MET image exploration using CUDA
Part of Proceedings SSBA 2012, 2012
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Regional Zernike Moments for Texture Recognition
Part of Proceedings of the 21st International Conference on Pattern Recognition (ICPR), p. 1635-1638, 2012
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Registration Parameter Spaces for Molecular Electron Tomography Images
Part of Image Analysis and Processing – ICIAP 2011, p. 403-412, 2011
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Virus texture analysis using local binary patterns and radial density profiles
Part of Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications, p. 573-580, 2011
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Investigating measures for transfer function generation for visualization of MET biomedical data
Part of WSCG '2011, p. 113-120, 2011
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Refinement of Segmented Virus Particel Candidates in TEM Images
2011
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Towards Identification of Highly Pathogenic Viruses Based on Image Analysis and TEM
Part of TAMSEC 2010, p. 25-25, 2010
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Part of Proceedings of the 16th Scandinavian Conference on Image Analysis (SCIA), p. 169-178, 2009
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Part of Proc. 6th International Symposium on Image and Signal Processing and Analysis, p. 426-431, 2009
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Detecting Virus-like Particles Using Transmission Electron Microscopy
Part of Proceedings SSBA 2009, Symposium on Image Analysis, p. 13-16, 2009
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Medial grey-level based representation for proteins in volume images
Part of Pattern Recognition and Image Analysis, p. 421-428, 2005
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Shape based identification of proteins in volume images
Part of Image Analysis, p. 253-262, 2005
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Individual pore segmentation in 3D volumes of fibrous materials
Part of SSBA Symposium on Image Analysis 2005, 2005
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Using grey-level and shape information for decomposing proteins in 3D images
Part of IEEE International, p. 800-803, 2004
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Description, Segmentation and Classification of Human Cytomegalovirus Capsids
Part of Proceedings SSAB'02 Symposium on Image Analysis, p. 21-24, 2002
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Weighted distance transforms for images using elongated voxel grids
2002