Antti Niemi

Topology in soft and biological matter

Tubiana, Luca; Alexander, Gareth P.; Barbensi, Agnese; Buck, Dorothy et al.

Ingår i Physics reports, s. 1-137, 2024

• DOI för Topology in soft and biological matter
• Ladda ner fulltext (pdf) av Topology in soft and biological matter

Long-Time Dynamics of Selected Molecular-Motor Components Using a Physics-Based Coarse-Grained Approach

Liwo, Adam; Pyrka, Maciej; Czaplewski, Cezary; Peng, Xubiao et al.

Ingår i Biomolecules, 2023

• DOI för Long-Time Dynamics of Selected Molecular-Motor Components Using a Physics-Based Coarse-Grained Approach
• Ladda ner fulltext (pdf) av Long-Time Dynamics of Selected Molecular-Motor Components Using a Physics-Based Coarse-Grained Approach

From Feynman's ratchet to time crystalline molecular motors

Wang, Jianmei; Dai, Jin; Niemi, Antti; Peng, Xubiao

Ingår i Journal of Chemical Physics, 2023

• DOI för From Feynman's ratchet to time crystalline molecular motors
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Poincare index formula and analogy with the Kosterlitz-Thouless transition in a non-rotated cold atom Bose-Einstein condensate

Garaud, Julien; Niemi, Antti

Ingår i Journal of High Energy Physics (JHEP), 2022

• DOI för Poincare index formula and analogy with the Kosterlitz-Thouless transition in a non-rotated cold atom Bose-Einstein condensate
• Ladda ner fulltext (pdf) av Poincare index formula and analogy with the Kosterlitz-Thouless transition in a non-rotated cold atom Bose-Einstein condensate

Investigation of Phosphorylation-Induced Folding of an Intrinsically Disordered Protein by Coarse-Grained Molecular Dynamics

Sieradzan, Adam K.; Korneev, Anatolii; Begun, Alexander; Kachlishvili, Khatuna et al.

Ingår i Journal of Chemical Theory and Computation, s. 3203-3220, 2021

• DOI för Investigation of Phosphorylation-Induced Folding of an Intrinsically Disordered Protein by Coarse-Grained Molecular Dynamics

Long-Time Dynamics of Selected Molecular-Motor Components Using a Physics-Based Coarse-Grained Approach

Liwo, Adam; Pyrka, Maciej; Czaplewski, Cezary; Peng, Xubiao et al.

Ingår i Biomolecules, 2023

• DOI för Long-Time Dynamics of Selected Molecular-Motor Components Using a Physics-Based Coarse-Grained Approach
• Ladda ner fulltext (pdf) av Long-Time Dynamics of Selected Molecular-Motor Components Using a Physics-Based Coarse-Grained Approach

From Feynman's ratchet to time crystalline molecular motors

Wang, Jianmei; Dai, Jin; Niemi, Antti; Peng, Xubiao

Ingår i Journal of Chemical Physics, 2023

• DOI för From Feynman's ratchet to time crystalline molecular motors
• Ladda ner fulltext (pdf) av From Feynman's ratchet to time crystalline molecular motors

Poincare index formula and analogy with the Kosterlitz-Thouless transition in a non-rotated cold atom Bose-Einstein condensate

Garaud, Julien; Niemi, Antti

Ingår i Journal of High Energy Physics (JHEP), 2022

• DOI för Poincare index formula and analogy with the Kosterlitz-Thouless transition in a non-rotated cold atom Bose-Einstein condensate
• Ladda ner fulltext (pdf) av Poincare index formula and analogy with the Kosterlitz-Thouless transition in a non-rotated cold atom Bose-Einstein condensate

Investigation of Phosphorylation-Induced Folding of an Intrinsically Disordered Protein by Coarse-Grained Molecular Dynamics

Sieradzan, Adam K.; Korneev, Anatolii; Begun, Alexander; Kachlishvili, Khatuna et al.

Ingår i Journal of Chemical Theory and Computation, s. 3203-3220, 2021

• DOI för Investigation of Phosphorylation-Induced Folding of an Intrinsically Disordered Protein by Coarse-Grained Molecular Dynamics

Rotation by deformation and time-crystalline dynamics of cyclopropane molecule

Peng, Xubiao; Dai, Jin; Niemi, Antti

Ingår i New Journal of Physics, 2021

• DOI för Rotation by deformation and time-crystalline dynamics of cyclopropane molecule
• Ladda ner fulltext (pdf) av Rotation by deformation and time-crystalline dynamics of cyclopropane molecule

Vortex precession and exchange in a Bose-Einstein condensate

Garaud, Julien; Dai, Jin; Niemi, Antti J.

Ingår i Journal of High Energy Physics (JHEP), 2021

• DOI för Vortex precession and exchange in a Bose-Einstein condensate
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Intrinsic protein geometry with application to non-proline cis peptide planes

Hou, Yanzhen; Dai, Jin; He, Jianfeng; Niemi, Antti et al.

Ingår i Journal of Mathematical Chemistry, s. 263-279, 2019

• DOI för Intrinsic protein geometry with application to non-proline cis peptide planes

Can the geometry of all-atom protein trajectories be reconstructed from the knowledge of Cα time evolution?: A study of peptide plane O and side chain Cβ atoms

Liu, Jiaojiao; Dai, Jin; He, Jianfeng; Peng, Xubiao et al.

Ingår i Journal of Chemical Physics, 2019

• DOI för Can the geometry of all-atom protein trajectories be reconstructed from the knowledge of Cα time evolution?: A study of peptide plane O and side chain Cβ atoms

Truncated dynamics, ring molecules, and mechanical time crystals

Dai, Jin; Niemi, Antti J.; Peng, Xubiao; Wilczek, Frank

Ingår i Physical Review A: covering atomic, molecular, and optical physics and quantum information, 2019

• DOI för Truncated dynamics, ring molecules, and mechanical time crystals

Gauge theory: protein topology and dynamics

Begun, A.; Gerasimenyuk, N.; Korneev, A.; Molochkov, A. et al.

Ingår i Journal of Bioenergetics and Biomembranes, s. 500-501, 2018

Multiple scales and phases in discrete chains with application to folded proteins

Sinelnikova, Anna; Niemi, Antti; Nilsson, Johan; Ulybyshev, M.

Ingår i Physical review. E, 2018

• DOI för Multiple scales and phases in discrete chains with application to folded proteins

Refractive-Light-Transmission Technique Applied to Density-Driven Convective Mixing in Porous Media With Implications for Geological CO2 Storage

Rasmusson, Maria; Fagerlund, Fritjof; Rasmusson, Kristina; Tsang, Y. et al.

Ingår i Water resources research, s. 8760-8780, 2017

• DOI för Refractive-Light-Transmission Technique Applied to Density-Driven Convective Mixing in Porous Media With Implications for Geological CO2 Storage

Solution x-ray scattering and structure formation in protein dynamics

Nasedkin, Alexandr; Davidsson, Jan; Niemi, Antti J.; Peng, Xubiao

Ingår i Physical review. E, 2017

• DOI för Solution x-ray scattering and structure formation in protein dynamics

Relation between discrete Frenet frames and the bi- Hamiltonian structure of the discrete nonlinear Schrödinger equation

Ioannidou, Theodora; Niemi, A

Ingår i Physical Review D, 2017

• DOI för Relation between discrete Frenet frames and the bi- Hamiltonian structure of the discrete nonlinear Schrödinger equation

Multistage modeling of protein dynamics with monomeric Myc oncoprotein as an example

Liu, Jiaojiao; Dai, Jin; He, Jianfeng; Niemi, Antti J. et al.

Ingår i Physical review. E, 2017

• DOI för Multistage modeling of protein dynamics with monomeric Myc oncoprotein as an example

Are There Folding Pathways in the Functional Stages of Intrinsically Disordered Proteins?

Ilieva, N.; Liu, J.; Marinova, R.; Petkov, P. et al.

Ingår i AIP Conference Proceedings, 2016

• DOI för Are There Folding Pathways in the Functional Stages of Intrinsically Disordered Proteins?

Thermal unfolding of myoglobin in the Landau-Ginzburg-Wilson approach

Peng, Xubiao; Sieradzan, Adam; Niemi, Antti

Ingår i Physical Review E. Covering statistical, nonlinear, biological, and soft matter physics, 2016

• DOI för Thermal unfolding of myoglobin in the Landau-Ginzburg-Wilson approach

Poisson hierarchy of discrete strings

Ioannidou, Theodora; Niemi, Antti J.

Ingår i Physics Letters A, s. 333-336, 2016

• DOI för Poisson hierarchy of discrete strings

On Ramachandran angles, closed strings and knots in protein structure

Chen, Si; Niemi, Antti J

Ingår i Journal of Physics D, 2016

• DOI för On Ramachandran angles, closed strings and knots in protein structure

Conformational landscape of an amyloid intra-cellular domain and Landau-Ginzburg-Wilson paradigm in protein dynamics

Dai, Jin; Niemi, Antti J.; He, Jianfeng

Ingår i Journal of Chemical Physics, 2016

• DOI för Conformational landscape of an amyloid intra-cellular domain and Landau-Ginzburg-Wilson paradigm in protein dynamics

Chern-Simons Improved Hamiltonians for Strings in Three Space Dimensions

Gordeli, Ivan; Melnikov, Dmitry; Niemi, Antti; Sedrakyan, Ara

Ingår i PHYSICAL REVIEW D, 2016

• DOI för Chern-Simons Improved Hamiltonians for Strings in Three Space Dimensions

Bloch spin waves and emergent structure in protein folding with HIV envelope glycoprotein as an example

Dai, Jin; Niemi, Antti; He, Jianfeng; Sieradzan, Adam et al.

Ingår i Physical review E, 2016

• DOI för Bloch spin waves and emergent structure in protein folding with HIV envelope glycoprotein as an example

Clustering and percolation in protein loop structures

Peng, Xubiao; He, Jianfeng; Niemi, Antti J.

Ingår i BMC Structural Biology, 2015

• DOI för Clustering and percolation in protein loop structures
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Benchmark Computations of stresses in a spherical dome with shell finite elements

Niemi, Antti

2015

• DOI för Benchmark Computations of stresses in a spherical dome with shell finite elements

Phase diagram and the pseudogap state in a linear chiral homopolymer model

Sinelnikova, A.; Niemi, Antti J.; Ulybyshev, M.

Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2015

• DOI för Phase diagram and the pseudogap state in a linear chiral homopolymer model

Aspects of structural landscape of human islet amyloid polypeptide

He, Jianfeng; Dai, Jin; Li, Jing; Peng, Xubiao et al.

Ingår i Journal of Chemical Physics, 2015

• DOI för Aspects of structural landscape of human islet amyloid polypeptide

Origin of the Architecture of Biological Macromolecules - A Mean-Field Perspective

Liwo, Jozef A.; Sieradzan, Adam K.; He, Yi; Krupa, Pawel et al.

Ingår i Biophysical Journal, 2014

• DOI för Origin of the Architecture of Biological Macromolecules - A Mean-Field Perspective

A three dimensional visualisation approach to protein heavy-atom structure reconstruction

Peng, Xubiao; Chenani, Alireza; Hu, Shuangwei; Zhou, Yifan et al.

Ingår i BMC Structural Biology, s. 27, 2014

• DOI för A three dimensional visualisation approach to protein heavy-atom structure reconstruction
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Kinks, loops, and protein folding, with protein A as an example

Krokhotin, Andrey; Liwo, Adam; Maisuradze, Gia G.; Niemi, Antti J. et al.

Ingår i Journal of Chemical Physics, 2014

• DOI för Kinks, loops, and protein folding, with protein A as an example

Peierls-Nabarro barrier and protein loop propagation

Sieradzan, Adam K.; Niemi, Antti; Peng, Xubiao

Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2014

• DOI för Peierls-Nabarro barrier and protein loop propagation

Long range correlations and folding angle with applications to alpha-helical proteins

Krokhotin, Andrey; Nicolis, Stam; Niemi, Antti J.

Ingår i Journal of Chemical Physics, 2014

• DOI för Long range correlations and folding angle with applications to alpha-helical proteins

Gauge fields, strings, solitons, anomalies, and the speed of life

Niemi, Antti J.

Ingår i Theoretical and mathematical physics, s. 1235-1262, 2014

• DOI för Gauge fields, strings, solitons, anomalies, and the speed of life

Spinors, strings, integrable models, and decomposed Yang-Mills theory

Ioannidou, Theodora; Jiang, Ying; Niemi, Antti J.

Ingår i Physical Review D, 2014

• DOI för Spinors, strings, integrable models, and decomposed Yang-Mills theory

Leapfrogging vortex rings in the Landau-Lifshitz equation

Niemi, Antti J.; Sutcliffe, Paul

Ingår i Nonlinearity, s. 2095-2109, 2014

• DOI för Leapfrogging vortex rings in the Landau-Lifshitz equation

On the shape optimization of flapping wings and their performance analysis

Niemi, Antti; Ghommem, Mehdi; Collier, Nathan; Calo, Victor

Ingår i Aerospace Science and Technology, s. 274-292, 2014

• DOI för On the shape optimization of flapping wings and their performance analysis

Analysis of the discontinuous Petrov–Galerkin method with optimal test functions for the Reissner–Mindlin plate bending model

Niemi, Antti; Calo, Victor; Collier, Nathaniel

Ingår i Computers and Mathematics with Applications, 2014

• DOI för Analysis of the discontinuous Petrov–Galerkin method with optimal test functions for the Reissner–Mindlin plate bending model

Soliton driven relaxation dynamics and protein collapse in the villin headpiece

Krokhotin, Andrey; Lundgren, Martin; Niemi, Antti J.; Peng, Xubiao

Ingår i Journal of Physics, s. 325103, 2013

• DOI för Soliton driven relaxation dynamics and protein collapse in the villin headpiece

On the role of thermal backbone fluctuations in myoglobin ligand gate dynamics

Krokhotin, Andrey; Niemi, Antti J.; Peng, Xubiao

Ingår i Journal of Chemical Physics, s. 175101, 2013

• DOI för On the role of thermal backbone fluctuations in myoglobin ligand gate dynamics

Energy functions for stringlike continuous curves, discrete chains, and space-filling one dimensional structures

Hu, Shuangwei; Jiang, Ying; Niemi, Antti J.

Ingår i Physical Review D, s. 105011, 2013

• DOI för Energy functions for stringlike continuous curves, discrete chains, and space-filling one dimensional structures

A comparison of reduced coordinate sets for describing protein structure

Hinsen, Konrad; Hu, Shuangwei; Kneller, Gerald R.; Niemi, Antti J.

Ingår i Journal of Chemical Physics, s. 124115, 2013

• DOI för A comparison of reduced coordinate sets for describing protein structure

Topology and structural self-organization in folded proteins

Lundgren, Martin; Krokhotin, Andrey; Niemi, Antti J.

Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2013

• DOI för Topology and structural self-organization in folded proteins

Automatically stable discontinuous Petrov–Galerkin methods for stationary transport problems: Quasi-optimal test space norm

Niemi, Antti; Collier, Nathaniel; Calo, Victor

Ingår i Computers & Mathematics with Applications, 2013

• DOI för Automatically stable discontinuous Petrov–Galerkin methods for stationary transport problems: Quasi-optimal test space norm

Soliton concepts and protein structure

Krokhotin, Andrei; Niemi, Antti J.; Peng, Xubiao

Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2012

• DOI för Soliton concepts and protein structure

Solitons and collapse in the lambda-repressor protein

Krokhotin, Andrey; Lundgren, Martin; Niemi, Antti J.

Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2012

• DOI för Solitons and collapse in the lambda-repressor protein

Correlation between protein secondary structure, backbone bond angles, and side-chain orientations

Lundgren, Martin; Niemi, Antti J.

Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2012

• DOI för Correlation between protein secondary structure, backbone bond angles, and side-chain orientations

Coexistence of phases in a protein heterodimer

Krokhotin, Andrey; Liwo, Adam; Niemi, Antti J; Scheraga, Harold A

Ingår i Journal of Chemical Physics, 2012

• DOI för Coexistence of phases in a protein heterodimer

Protein loops, solitons and side-chain visualization with applications to the left-handed helix region

Lundgren, Martin; Niemi, Antti; Sha, Fan

Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2012

• DOI för Protein loops, solitons and side-chain visualization with applications to the left-handed helix region

Protein Regge Trajectories, Phase Coexistence and Loop Aetiology in Alzheimers Disease

Niemi, Antti; Krokhotin, Andrey

Ingår i Nature Precedings, 2011

• DOI för Protein Regge Trajectories, Phase Coexistence and Loop Aetiology in Alzheimers Disease

The protein dynamical transition is a pseudogap changeover

Niemi, Antti; Krokhotin, Andrei

2011

Elastic Energy and Phase Structure in a Continuous Spin Ising Chain with Applications to the Protein Folding Problem

Chernodub, M.N.; Lundgren, Martin; Niemi, Antti J.

Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2011

• DOI för Elastic Energy and Phase Structure in a Continuous Spin Ising Chain with Applications to the Protein Folding Problem

Towards quantitative classification of folded proteins in terms of elementary functions

Hu, Shuangwei; Krokhotin, Andrei; Niemi, Antti J.; Peng, Xubiao

Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2011

• DOI för Towards quantitative classification of folded proteins in terms of elementary functions

Elastic energy and phase structure in a continuous spin Ising chain with applications to chiral homopolymers

Chernodub, M. N.; Lundgren, Martin; Niemi, Antti J.

Ingår i Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 2011

• DOI för Elastic energy and phase structure in a continuous spin Ising chain with applications to chiral homopolymers

Discrete Nonlinear Schrodinger Equation and Polygonal Solitons with Applications to Collapsed Proteins

Molkenthin, Nora; Hu, Shuangwei; Niemi, Antti J.

Ingår i Physical Review Letters, 2011

• DOI för Discrete Nonlinear Schrodinger Equation and Polygonal Solitons with Applications to Collapsed Proteins

Discrete Frenet frame, inflection point solitons, and curve visualization with applications to folded proteins

Hu, Shuangwei; Lundgren, Martin; Niemi, Antti J.

Ingår i Physical Review E, 2011

• DOI för Discrete Frenet frame, inflection point solitons, and curve visualization with applications to folded proteins

On solutions to the "Faddeev-Niemi" equations

Niemi, Antti J.; Wereszczynski, Andrzej

Ingår i Journal of Mathematical Physics, 2011

• DOI för On solutions to the "Faddeev-Niemi" equations

Solitons and Physics of the Lysogenic to Lytic Transition in Enterobacteria Lambda Phage

Niemi, Antti; Krokhotin, Andrey

2011

On universal aspects of the left-handed helix region

Niemi, Antti; Lundgren, Martin

2011

Gauge field theory of chirally folded homopolymers with applications to folded proteins

Danielsson, Ulf H.; Lundgren, Martin; Niemi, Antti J.

Ingår i Physical Review E, 2010

• DOI för Gauge field theory of chirally folded homopolymers with applications to folded proteins

Topological solitons and folded proteins

Chernodub, Maxim; Hu, Shuangwei; Niemi, Antti J.

Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 2010

• DOI för Topological solitons and folded proteins

Four-dimensional Yang-Mills theory, gauge invariant mass and fluctuating three-branes

Niemi, Antti J.; Slizovskiy, Sergey

Ingår i Journal of physics. A, Mathematical and theoretical, s. 425402, 2010

• DOI för Four-dimensional Yang-Mills theory, gauge invariant mass and fluctuating three-branes

Baryon number violation and a new electroweak interaction

Chernodub, M. N.; Niemi, Antti J

Ingår i Physical Review D, 2009

• DOI för Baryon number violation and a new electroweak interaction

On spacetime rotation invariance, spin-charge separation and SU (2) Yang–Mills theory

Niemi, Antti J.; Slizovskiy, Sergey

Ingår i Journal of Physics A, s. 322001, 2009

• DOI för On spacetime rotation invariance, spin-charge separation and SU (2) Yang–Mills theory

Non-abelian supercurrents and de Sitter ground state in electroweak theory

Chernodub, M. N.; Faddeev, Ludvig; Niemi, Antti J.

Ingår i Journal of High Energy Physics (JHEP), 2008

Embedding Brans-Dicke gravity into electroweak theory

Chernodub, M. N.; Niemi, Antti J.

Ingår i Physical Review D, s. 127902, 2008

• DOI för Embedding Brans-Dicke gravity into electroweak theory

Spin-Charge Separation and the Pauli Electron

Chernodub, Maxim N.; Niemi, Antti J.

Ingår i JETP Letters, s. 353-357, 2007

• DOI för Spin-Charge Separation and the Pauli Electron

Spin-charge separation, conformal covariance and the SU(2) Yang–Mills theory

Faddeev, Ludvig D.; Niemi, Antti J.

Ingår i Nuclear Physics B, s. 38-65, 2007

• DOI för Spin-charge separation, conformal covariance and the SU(2) Yang–Mills theory

Could Spin-Charge Separation be the Source of Confinement?

Niemi, Antti

Ingår i AIP Conference Proceedings, s. 114-123, 2006

BRST extension of the Faddeev model

Hong, Soon-Tae; Niemi, Antti

Ingår i Physical Review D, s. 127701, 2005

Splitting the gluon?

Niemi, Antti; Walet, Niels

Ingår i Physical Review D, 2005

Three dimensional gravity from SU(2) Yang-Mills theory in two dimensions

Niemi, Antti

Ingår i Phys. Rev., 2004

Glueballs, closed fluxtubes and eta(1440)

Wiedner, Ulrich; Niemi, Antti; Faddeev, Ludvig

Ingår i Phys. Rev., 2004

Topological aspects of dual superconductors

Hong, Soon-Tae; Niemi, Antti

Ingår i Phys. Rev. B70, 2004

Dual Superconductors and SU(2) Yang-Mills

Niemi, Antti

Ingår i JHEP 0408, 2004

Chirality and fermion number in a knotted soliton background

Freyhult, Lisa; Niemi, Antti J.

Ingår i Physics Letters B, s. 121-124, 2003

• DOI för Chirality and fermion number in a knotted soliton background

Phases of bosonic strings and two dimensional gauge theories

Niemi, Antti

Ingår i Phys. Rev., s. 106004, 2003

Can renormalization group flow end in a big mess?

Morozov, Alexei; Niemi, Antti

Ingår i Nucl. Phys., s. 311-336, 2003

Asymptotically free Yang-Mills classical mechanics with self-linked orbits

Lubcke, M; Niemi, undefined; Torokoff, K.

Ingår i Phys. Lett., s. 176-180, 2003

Effective string theories and field theories in four dimensions

Nasir, S.; Niemi, A

Ingår i Modern Physics Letters A, s. 1445-1453, 2002

Shafranov's virial theorem and magnetic plasma confinement

Faddeev, Ludwig D.; Freyhult, Lisa; Niemi, Antti J.; Rajan, Peter

Ingår i Journal of Physics A, 2002

• DOI för Shafranov's virial theorem and magnetic plasma confinement

Electric-magnetic duality in infrared SU(2) Yang-Mills theory

Faddeev, L; Niemi, Antti

Ingår i Phys. Lett., s. 195-200, 2002

Hidden symmetry and knot solitons in a charged two-condensate Bose system

Babaev, Egor; Faddeev, L; Niemi, undefined

Ingår i Physical Review B, s. 100512, 2002

Hidden symmetry and duality in a charged two-condensate Bose system

Babaev, Egor; Faddeev, undefined; Niemi, Antti

Ingår i Phys. Rev., s. 100512, 2002

Twisted plasma column

Lubcke, M.; Nasir, S. M.; Niemi, A; Torokoff, K.

Ingår i Phys. Lett., s. 195-200, 2002

Decomposing the Yang-Mills field

Faddeev, L; Niemi, A

Ingår i PHYSICS LETTERS B, s. 90-93, 1999

Partially dual variables in SU(2) Yang-Mills theory

Faddeev, L; Niemi, A

Ingår i PHYSICAL REVIEW LETTERS, s. 1624-1627, 1999

Stable knot-like structures in classical field theory

Faddeev, L; Niemi, A

Ingår i NATURE, s. 58-61, 1997

Soliton driven relaxation dynamics and universality in protein collapse

Krokhotin, Andrey; Lundgren, Martin; Niemi, Antti J.

Topology in soft and biological matter

Tubiana, Luca; Alexander, Gareth P.; Barbensi, Agnese; Buck, Dorothy et al.

Ingår i Physics reports, s. 1-137, 2024

• DOI för Topology in soft and biological matter
• Ladda ner fulltext (pdf) av Topology in soft and biological matter

Gauge symmetries and structure of proteins

Molochkov, Alexander; Begun, Alexander; Niemi, Antti

Ingår i XIITH QUARK CONFINEMENT AND THE HADRON SPECTRUM, 2017

• DOI för Gauge symmetries and structure of proteins
• Ladda ner fulltext (pdf) av Gauge symmetries and structure of proteins

Solitons And Protein Folding: An In Silico Experiment

Ilieva, N.; Dai, J.; Sieradzan, A.; Niemi, Antti

Ingår i Application of Mathematics in Technical and Natural Sciences (AMiTaNS'15), 2015

• DOI för Solitons And Protein Folding: An In Silico Experiment

Are glueballs knotted closed strings?

Niemi, Antti

Ingår i Wako 2003, Color confinement and hadrons in quantum chromodynamics, 2003

Covalent bond symmetry breaking and protein secondary structure

Niemi, Antti; Lundgren, Martin

2011

On Relations Between Electroweak Hierarchy Problem, Fluctuating Three Branes And General Covariance

Niemi, Antti J.; Slizovskiy, Sergey

2010

• DOI för On Relations Between Electroweak Hierarchy Problem, Fluctuating Three Branes And General Covariance

Knots and Swelling in Protein Folding

Lundgren, Martin; Niemi, Antti J.

2009

• DOI för Knots and Swelling in Protein Folding

WHAT IS LIFE - Sub-cellular Physics of Live Matter

Niemi, Antti

2014