Infection Medicine

A Natural Language Processing Approach towards Harmonized Communication of Uncertainties Identified during the European Medicine Authorization Process

Verweij, Stefan; Haverhoek, Vincent; Bergman, Erik; Westman, Gabriel et al.

Part of Clinical Pharmacology and Therapeutics, p. 871-880, 2024

• DOI for A Natural Language Processing Approach towards Harmonized Communication of Uncertainties Identified during the European Medicine Authorization Process
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Antibiotic-induced microbiome disturbances in hematological patients undergoing hematopoietic stem cell transplantation: a prospective observational study

Montelin, Hanna; Hugerth, Luisa; Debelius, Justine; Melhus, Åsa et al.

2024

Bacteriuria and antibiotic use during the third wave of COVID-19 intensive care in Sweden

Karlsson, Philip A.; Bolin, Christian; Spång, Labolina; Frithiof, Robert et al.

Part of Infectious Diseases, p. 1-10, 2024

• DOI for Bacteriuria and antibiotic use during the third wave of COVID-19 intensive care in Sweden
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BK polyomavirus infection after kidney transplantation: Risk factors, viral transmission and immune response

Lorant, Camilla

2024

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Consensus Definitions of Cytomegalovirus (CMV) Infection and Disease in Transplant Patients Including Resistant and Refractory CMV for Use in Clinical Trials: 2024 Update From the Transplant Associated Virus Infections Forum

Ljungman, Per; Chemaly, Roy F.; Khawaya, Fareed; Alain, Sophie et al.

Part of Clinical Infectious Diseases, p. 787-794, 2024

• DOI for Consensus Definitions of Cytomegalovirus (CMV) Infection and Disease in Transplant Patients Including Resistant and Refractory CMV for Use in Clinical Trials: 2024 Update From the Transplant Associated Virus Infections Forum
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Diagnosis of external ventricular drainage related infections with real-time 16S PCR and third-generation 16S sequencing

Widen, Johan; Moren, Jakob; Mölling, Paula; Fagerström, Anna et al.

Part of Infectious Diseases, p. 521-530, 2024

• DOI for Diagnosis of external ventricular drainage related infections with real-time 16S PCR and third-generation 16S sequencing
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High-throughput phenotype-to-genotype testing of meningococcal carriage and disease isolates detects genetic determinants of disease-relevant phenotypic traits

Farzand, Robeena; Kimani, Mercy W.; Mourkas, Evangelos; Jama, Abdullahi et al.

Part of mBio, 2024

• DOI for High-throughput phenotype-to-genotype testing of meningococcal carriage and disease isolates detects genetic determinants of disease-relevant phenotypic traits
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Identification of novel and potent inhibitors of SARS-CoV-2 main protease from DNA-encoded chemical libraries

Akaberi, Dario; Pourghasemi Lati, Monireh; Krambrich, Janina; Berger, Julia et al.

Part of Antimicrobial Agents and Chemotherapy, p. 1-18, 2024

• DOI for Identification of novel and potent inhibitors of SARS-CoV-2 main protease from DNA-encoded chemical libraries
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Impact of ceftibuten, ciprofloxacin, nitrofurantoin, pivmecillinam and trimethoprim-sulphamethoxazole on the intestinal microbiota and resistome: a randomized controlled trial with healthy adults

Montelin, Hanna; Debelius, Justine; Sewunet, Tsegaye; Nääs, Anja et al.

2024

Influenza-associated invasive aspergillosis in patients admitted to the intensive care unit in Sweden: a prospective multicentre cohort study

Krifors, Anders; Blennow, Ola; Påhlman, Lisa I; Gille-Johnson, Patrik et al.

Part of Infectious Diseases, p. 110-115, 2024

• DOI for Influenza-associated invasive aspergillosis in patients admitted to the intensive care unit in Sweden: a prospective multicentre cohort study
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Invasive Candida infections: Treatment of the critically ill and patients with infective endocarditis

Kurland, Siri

2024

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Knowledge gaps related to HIV and condom use for preventing pregnancy: a cross-sectional study among migrants in Sweden

Tirado, Veronika; Orsini, Nicola; Strömdahl, Susanne; Hanson, Claudia et al.

Part of BMC Public Health, 2024

• DOI for Knowledge gaps related to HIV and condom use for preventing pregnancy: a cross-sectional study among migrants in Sweden
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Lung function at 1-year follow-up in patients with persistent dyspnea after mild COVID-19: comparisons with moderate and critical COVID-19

Kisiel, Marta A.; Neiderud, Carl-Johan; Ekbom, Emil; Westman, Gabriel et al.

Part of Upsala Journal of Medical Sciences, 2024

• DOI for Lung function at 1-year follow-up in patients with persistent dyspnea after mild COVID-19: comparisons with moderate and critical COVID-19
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Management of cytomegalovirus infections - Swedish recommendations 2023

Swartling, Lisa; Engman, Mona-Lisa; Eriksen, Jaran; Fischler, Bjoern et al.

Part of Infectious Diseases, p. 907-917, 2024

• DOI for Management of cytomegalovirus infections - Swedish recommendations 2023

Model-informed precision dosing of vancomycin in clinical practice: an intervention development study.

Swartling, Maria; Hamberg, Anna-Karin; Furebring, Mia; Tängdén, Thomas et al.

Part of International Journal of Clinical Pharmacy, 2024

• DOI for Model-informed precision dosing of vancomycin in clinical practice: an intervention development study.

Molecular characteristics, fitness, and virulence of high-risk and non-high-risk clones of carbapenemase-producing Klebsiella pneumoniae

Örmälä-Tiznado, Anni-Maria; Allander, Lisa; Maatallah, Makaoui; Kabir, Muhammad Humaun et al.

Part of Microbiology Spectrum, p. 1-14, 2024

• DOI for Molecular characteristics, fitness, and virulence of high-risk and non-high-risk clones of carbapenemase-producing Klebsiella pneumoniae
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Optimizing Signal Management in a Vaccine Adverse Event Reporting System: A Proof-of-Concept with COVID-19 Vaccines Using Signs, Symptoms, and Natural Language Processing

Dong, Guojun; Bate, Andrew; Haguinet, François; Westman, Gabriel et al.

Part of Drug Safety, p. 173-182, 2024

• DOI for Optimizing Signal Management in a Vaccine Adverse Event Reporting System: A Proof-of-Concept with COVID-19 Vaccines Using Signs, Symptoms, and Natural Language Processing
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Perceptions of Carriership of Extended-Spectrum Beta-Lactamase (ESBL)-Producing Bacteria: A Qualitative Study

Uggla, Karin; Razmi, Robin; Järhult, Josef D.; Lindberg, Maria

Part of Nursing Reports, p. 1819-1827, 2024

• DOI for Perceptions of Carriership of Extended-Spectrum Beta-Lactamase (ESBL)-Producing Bacteria: A Qualitative Study
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Prevalence and associated factors for poor mental health among young migrants in Sweden: a cross-sectional study

Causevic, Sara; Ekström, Anna Mia; Orsini, Nicola; Kagesten, Anna et al.

Part of Global Health Action, 2024

• DOI for Prevalence and associated factors for poor mental health among young migrants in Sweden: a cross-sectional study
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Proximity to humans is associated with antimicrobial-resistant enteric pathogens in wild bird microbiomes

Mourkas, Evangelos; Valdebenito, José O.; Marsh, Hannah; Hitchings, Matthew D. et al.

Part of Current Biology, p. 3955-39650000, 2024

• DOI for Proximity to humans is associated with antimicrobial-resistant enteric pathogens in wild bird microbiomes

Pulmonary embolism after SARS-CoV-2 vaccination

Zethelius, Björn; Attelind, Sofia; Westman, Gabriel; Ljung, Rickard et al.

Part of Vaccine: X, 2024

• DOI for Pulmonary embolism after SARS-CoV-2 vaccination
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Quantifying combined effects of colistin and ciprofloxacin against Escherichia coli in an in silico pharmacokinetic-pharmacodynamic model

Zhao, Chenyan; Kristoffersson, Anders N.; Khan, David D.; Lagerbäck, Pernilla et al.

Part of Scientific Reports, 2024

• DOI for Quantifying combined effects of colistin and ciprofloxacin against Escherichia coli in an in silico pharmacokinetic-pharmacodynamic model
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Response to comment on 'International consensus recommendations for the use of prolonged-infusion β-lactams endorsed by the American College of Clinical Pharmacy (ACCP), the British Society for Antimicrobial Chemotherapy (BSAC), the Cystic Fibrosis Foundation (CFF), the European Society of Clinical Microbiology and Infectious Diseases (ESCMID), the Infectious Diseases Society of American (IDSA), the Society of Critical Care Medicine (SCCM), and the Society of Infectious Diseases Pharmacists'

Hong, Lisa T.; Downes, Kevin J.; Fakhriravari, Alireza; Abdul-Mutakabbir, Jacinda C. et al.

Part of Pharmacotherapy, p. 208-209, 2024

• DOI for Response to comment on 'International consensus recommendations for the use of prolonged-infusion β-lactams endorsed by the American College of Clinical Pharmacy (ACCP), the British Society for Antimicrobial Chemotherapy (BSAC), the Cystic Fibrosis Foundation (CFF), the European Society of Clinical Microbiology and Infectious Diseases (ESCMID), the Infectious Diseases Society of American (IDSA), the Society of Critical Care Medicine (SCCM), and the Society of Infectious Diseases Pharmacists'

The 2024 political declaration on antimicrobial resistance needs bold targets

Tangcharoensathien, Viroj; Cars, Otto; Lekagul, Angkana

Part of BMJ. British Medical Journal, 2024

• DOI for The 2024 political declaration on antimicrobial resistance needs bold targets

The risk factors associated with post-transplantation BKPyV nephropathy and BKPyV DNAemia: a prospective study in kidney transplant recipients

Lorant, Camilla; Zigmantaviciute, Justina; Ali, Naima; Bonnevier, Ursa et al.

Part of BMC Infectious Diseases, 2024

• DOI for The risk factors associated with post-transplantation BKPyV nephropathy and BKPyV DNAemia: a prospective study in kidney transplant recipients
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Treatment, outcomes and characterization of pathogens in urinary tract infections caused by ESBL-producing Enterobacterales: a prospective multicentre study

Montelin, Hanna; Camporeale, Angela; Hallgren, Anna; Angelin, Martin et al.

Part of Journal of Antimicrobial Chemotherapy, p. 531-538, 2024

• DOI for Treatment, outcomes and characterization of pathogens in urinary tract infections caused by ESBL-producing Enterobacterales: a prospective multicentre study
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Tumor Predisposing Post-Zygotic Chromosomal Alterations in Bladder Cancer-Insights from Histologically Normal Urothelium

Stankowska, Wiktoria; Sarkisyan, Daniil; Bruhn-Olszewska, Bozena; Duzowska, Katarzyna et al.

Part of Cancers, 2024

• DOI for Tumor Predisposing Post-Zygotic Chromosomal Alterations in Bladder Cancer-Insights from Histologically Normal Urothelium
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Understanding veterinary drug shop workers' knowledge and practices to identify drivers of antibiotic use in Vietnamese livestock farms

Nohrborg, Sandra; Nguyen-Thi, Thinh; Xuan, Huyen Nguyen; Hai, Yen Luu Thi et al.

Part of Veterinary medicine and science, 2024

• DOI for Understanding veterinary drug shop workers' knowledge and practices to identify drivers of antibiotic use in Vietnamese livestock farms
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Understanding Vietnamese chicken farmers' knowledge and practices related to antimicrobial resistance using an item response theory approach

Nohrborg, Sandra; Nguyen-Thi, Thinh; Xuan, Huyen Nguyen; Lindahl, Johanna et al.

Part of Frontiers in Veterinary Science, 2024

• DOI for Understanding Vietnamese chicken farmers' knowledge and practices related to antimicrobial resistance using an item response theory approach
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Validation of a web-based self-administered test for cognitive assessment in a Swedish geriatric setting

Rystedt, Einar; Moren, Jakob; Lindbäck, Johan; Tedim Cruz, Vitor et al.

Part of PLOS ONE, 2024

• DOI for Validation of a web-based self-administered test for cognitive assessment in a Swedish geriatric setting
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A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks

Naguib, Mahmoud; Eriksson, Per; Jax, Elinor; Wille, Michelle et al.

Part of Microbiology Spectrum, 2023

• DOI for A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks
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A full-document analysis of the semantic relation between European Public Assessment Reports and EMA guidelines using a BERT language model

Bergman, Erik; Pasmooij, Anna Maria Gerdina; Mol, Peter G. M.; Westman, Gabriel

Part of PLOS ONE, 2023

• DOI for A full-document analysis of the semantic relation between European Public Assessment Reports and EMA guidelines using a BERT language model
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A Rough Colony Morphology of Mycobacterium abscessus Is Associated With Cavitary Pulmonary Disease and Poor Clinical Outcome

Hedin, Wilhelm; Fröberg, Gabrielle; Fredman, Kalle; Chryssanthou, Erja et al.

Part of Journal of Infectious Diseases, p. 820-827, 2023

• DOI for A Rough Colony Morphology of Mycobacterium abscessus Is Associated With Cavitary Pulmonary Disease and Poor Clinical Outcome
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Absenteeism Costs Due to COVID-19 and Their Predictors in Non-Hospitalized Patients in Sweden: A Poisson Regression Analysis

Kisiel, Marta; Lee, Seika; Janols, Helena; Faramarzi, Ahmad

Part of International Journal of Environmental Research and Public Health, 2023

• DOI for Absenteeism Costs Due to COVID-19 and Their Predictors in Non-Hospitalized Patients in Sweden: A Poisson Regression Analysis
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Activity of polymyxin B combinations against genetically well-characterised Klebsiella pneumoniae producing NDM-1 and OXA-48-like carbapenemases

Olsson, Anna; Allander, Lisa; Shams, Ayda; Al-Farsi, Hissa et al.

Part of International Journal of Antimicrobial Agents, 2023

• DOI for Activity of polymyxin B combinations against genetically well-characterised Klebsiella pneumoniae producing NDM-1 and OXA-48-like carbapenemases
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Age-specific and sex-specific risks for HCC in African-born persons with chronic hepatitis B without cirrhosis

Kamal, Habiba; Ingre, Michael; Stål, Per; Westman, Gabriel et al.

Part of Hepatology Communications, 2023

• DOI for Age-specific and sex-specific risks for HCC in African-born persons with chronic hepatitis B without cirrhosis
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Agreement between reported questionnaire data and medical records on diagnosis and COVID-19 symptoms at onset

Kisiel, Marta A.; Kock, Claes; Sultan, Josef; Janols, Helena et al.

Part of European Clinical Respiratory Journal, 2023

• DOI for Agreement between reported questionnaire data and medical records on diagnosis and COVID-19 symptoms at onset
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An experimental porcine model of invasive candidiasis

Krifors, Anders; Lignell, Anders; Lipcsey, Miklós; Sjölin, Jan et al.

Part of Intensive Care Medicine Experimental, 2023

• DOI for An experimental porcine model of invasive candidiasis
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An oseltamivir-resistant avian H1N1 influenza A virus can transmit from mallards to chickens similarly to a wild-type strain: implications for the risk of resistance transmission to humans

Skog, Erik; Nykvist, Marie; Naguib, Mahmoud M.; Wille, Michelle et al.

Part of Journal of General Virology, 2023

• DOI for An oseltamivir-resistant avian H1N1 influenza A virus can transmit from mallards to chickens similarly to a wild-type strain: implications for the risk of resistance transmission to humans
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Anakinra or tocilizumab in patients admitted to hospital with severe covid-19 at high risk of deterioration (IMMCoVA): A randomized, controlled, open-label trial

Sundén-Cullberg, Jonas; Chen, Puran; Häbel, Henrike; Skorup, Paul et al.

Part of PLOS ONE, 2023

• DOI for Anakinra or tocilizumab in patients admitted to hospital with severe covid-19 at high risk of deterioration (IMMCoVA): A randomized, controlled, open-label trial
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Antibiotic use during coronavirus disease 2019 intensive care unit shape multidrug resistance bacteriuria: A Swedish longitudinal prospective study

Karlsson, Philip A.; Pärssinen, Julia; Danielsson, Erik A.; Fatsis-Kavalopoulos, Nikos et al.

Part of Frontiers in Medicine, 2023

• DOI for Antibiotic use during coronavirus disease 2019 intensive care unit shape multidrug resistance bacteriuria: A Swedish longitudinal prospective study
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Assessing compatibility and viral fitness between poultry-adapted H9N2 and wild bird-derived neuraminidases

Wasberg, Anishia; Rodrigues Faria, Ines; Bergholm, Julia; Petric, Philipp P. et al.

Part of Scientific Reports, 2023

• DOI for Assessing compatibility and viral fitness between poultry-adapted H9N2 and wild bird-derived neuraminidases
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Candidatus Rickettsia Vini DNA in Ticks Collected from Nest Burrows of the European Sand Martin (Riparia riparia) in Sweden

Wilhelmsson, Peter; Lindgren, Per-Eric; Fransson, Thord; Grandi, Giulio et al.

Part of Vector Borne and Zoonotic Diseases, p. 378-383, 2023

• DOI for Candidatus Rickettsia Vini DNA in Ticks Collected from Nest Burrows of the European Sand Martin (Riparia riparia) in Sweden

Clustering Analysis Identified Three Long COVID Phenotypes and Their Association with General Health Status and Working Ability

Kisiel, Marta A.; Lee, Seika; Malmquist, Sara; Rykatkin, Oliver et al.

Part of Journal of Clinical Medicine, 2023

• DOI for Clustering Analysis Identified Three Long COVID Phenotypes and Their Association with General Health Status and Working Ability
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Combination therapy of tyrosine kinase inhibitor sorafenib with the HSP90 inhibitor onalespib as a novel treatment regimen for thyroid cancer

Lundgren Mortensen, Anja Charlotte; Berglund, Hanna; Hariri, Mehran; Papalanis, Eleftherios et al.

Part of Scientific Reports, 2023

• DOI for Combination therapy of tyrosine kinase inhibitor sorafenib with the HSP90 inhibitor onalespib as a novel treatment regimen for thyroid cancer
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Early decreased respiratory chain capacity in resuscitated experimental sepsis is a major contributor to lactate production

von Seth, Magnus; Hillered, Lars; Otterbeck, Alexander; Hanslin, Katja et al.

Part of Shock, p. 461-468, 2023

• DOI for Early decreased respiratory chain capacity in resuscitated experimental sepsis is a major contributor to lactate production

Early Staphylococcal Periprosthetic Joint Infection (PJI) Treated with Debridement, Antibiotics, and Implant Retention (DAIR): Inferior Outcomes in Patients with Staphylococci Resistant to Rifampicin

Eriksson, Hannah K.; Lazarinis, Stergios; Järhult, Josef D.; Hailer, Nils

Part of Antibiotics, 2023

• DOI for Early Staphylococcal Periprosthetic Joint Infection (PJI) Treated with Debridement, Antibiotics, and Implant Retention (DAIR): Inferior Outcomes in Patients with Staphylococci Resistant to Rifampicin
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Enhanced bacterial clearance in early secondary sepsis in a porcine intensive care model.

Wilske, Frida; Skorup, Paul; Hanslin, Katja; Janols, Helena et al.

Part of Scientific Reports, 2023

• DOI for Enhanced bacterial clearance in early secondary sepsis in a porcine intensive care model.
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Exploring the epidemiology of mcr genes, genetic context and plasmids in Enterobacteriaceae originating from pigs and humans on farms in Thailand

Leangapichart, Thongpan; Stosic, Milan S; Hickman, Rachel A.; Lunha, Kamonwan et al.

Part of Journal of Antimicrobial Chemotherapy, p. 1395-1405, 2023

• DOI for Exploring the epidemiology of mcr genes, genetic context and plasmids in Enterobacteriaceae originating from pigs and humans on farms in Thailand
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Expression of influenza A virus glycan receptor candidates in mallard, chicken, and tufted duck

Nilsson, Jonas; Eriksson, Per; Naguib, Mahmoud; Jax, Elinor et al.

Part of Glycobiology, 2023

• DOI for Expression of influenza A virus glycan receptor candidates in mallard, chicken, and tufted duck
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