Infektionsmedicin

A core genome MLST scheme for Borrelia burgdorferi sensu lato improves insights into the evolutionary history of the species complex

Hepner, Sabrina; Jolley, Keith A.; Castillo-Ramirez, Santiago; Mourkas, Evangelos et al.

Ingår i Cell Reports Methods, s. 100935, 2025

• DOI för A core genome MLST scheme for Borrelia burgdorferi sensu lato improves insights into the evolutionary history of the species complex
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A systematic review of antibiotic drug shortages and the strategies employed for managing these shortages

Pandey, Avaneesh Kumar; Cohn, Jennifer; Nampoothiri, Vrinda; Gadde, Uttara et al.

Ingår i Clinical Microbiology and Infection, s. 345-353, 2025

• DOI för A systematic review of antibiotic drug shortages and the strategies employed for managing these shortages
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An integrative and translational PKPD modelling approach to explore the combined effect of polymyxin B and minocycline against Klebsiella pneumoniae

Zhao, Chenyan; van den Berg, Sanne; Wang, Zhigang; Olsson, Anna et al.

Ingår i International Journal of Antimicrobial Agents, 2025

• DOI för An integrative and translational PKPD modelling approach to explore the combined effect of polymyxin B and minocycline against Klebsiella pneumoniae
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Comprised access to antibiotics d the growing problem of availability and responsible use

Tängdén, Thomas; Charani, Esmita

Ingår i Clinical Microbiology and Infection, s. 331-332, 2025

• DOI för Comprised access to antibiotics d the growing problem of availability and responsible use

Enhancing glioblastoma therapy: unveiling synergistic anticancer effects of Onalespib - radiotherapy combination therapy

Uffenorde, Julia; Hariri, Mehran; Papalanis, Eleftherios; Staffas, Annika et al.

Ingår i Frontiers in Oncology, 2025

• DOI för Enhancing glioblastoma therapy: unveiling synergistic anticancer effects of Onalespib - radiotherapy combination therapy
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Genomic insights into extended-spectrum β-lactamase- and plasmid-borne AmpC-producing Escherichia coli transmission between humans and livestock in rural Cambodia

Elmarghani, Ebraheem D.; Pettersson, John H.-O.; Atterby, Clara; Hickman, Rachel A. et al.

Ingår i Journal of Medical Microbiology, 2025

• DOI för Genomic insights into extended-spectrum β-lactamase- and plasmid-borne AmpC-producing Escherichia coli transmission between humans and livestock in rural Cambodia
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Introducing new antibiotics for multidrug-resistant bacteria: obstacles and the way forward

Tängdén, Thomas; Carrara, Elena; Hellou, Mona Mustafa; Yahav, Dafna et al.

Ingår i Clinical Microbiology and Infection, s. 354-359, 2025

• DOI för Introducing new antibiotics for multidrug-resistant bacteria: obstacles and the way forward
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'Introducing new antibiotics for multidrug-resistant bacteria: obstacles and the way forward' - author's response

Tängdén, Thomas; Carrara, Elena; Hellou, Mona Mustafa; Yahav, Dafna et al.

Ingår i Clinical Microbiology and Infection, s. 871-872, 2025

• DOI för 'Introducing new antibiotics for multidrug-resistant bacteria: obstacles and the way forward' - author's response

Maximum lifespan and brain size in mammals are associated with gene family size expansion related to immune system functions

Kilili, Huseyin; Padilla-Morales, Benjamin; Castillo-Morales, Atahualpa; Monzón-Sandoval, Jimena et al.

Ingår i Scientific Reports, 2025

• DOI för Maximum lifespan and brain size in mammals are associated with gene family size expansion related to immune system functions
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Model-informed precision dosing of vancomycin in clinical practice: an intervention development study

Swartling, Maria; Hamberg, Anna-Karin; Furebring, Mia; Tängdén, Thomas et al.

Ingår i International Journal of Clinical Pharmacy, s. 178-186, 2025

• DOI för Model-informed precision dosing of vancomycin in clinical practice: an intervention development study
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Regulations, biosecurity measures, and impact of COVID-19: A comprehensive mixed method study in traditional wet and live animal markets in Bangladesh

Chowdhury, Sukanta; Das, Tushar Kumar; Chisty, Nurun Nahar; Biswas, Sajal Kanti et al.

Ingår i One Health, 2025

• DOI för Regulations, biosecurity measures, and impact of COVID-19: A comprehensive mixed method study in traditional wet and live animal markets in Bangladesh
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Repeated positron emission tomography tracing neutrophil elastase in a porcine intensive-care sepsis model

Wilske, Frida; Eriksson, Olof; Amini, Rose-Marie; Estrada, Sergio et al.

Ingår i Intensive Care Medicine Experimental, 2025

• DOI för Repeated positron emission tomography tracing neutrophil elastase in a porcine intensive-care sepsis model
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Three serotypes of dengue virus circulated in hospitalized adult patients in an endemic metropolitan city of Northern Vietnam

Nguyen-Tien, Thang; Ling, Jiaxin; Dao, Tung Duy; Bui, Anh Ngoc et al.

Ingår i Asian Pacific Journal of Tropical Medicine, 2025

• DOI för Three serotypes of dengue virus circulated in hospitalized adult patients in an endemic metropolitan city of Northern Vietnam

Utilizing gentamicin concentrations to estimate glomerular filtration rate in intensive care unit patients.

Smekal, Anna-Karin; Swartling, Maria; Nielsen, Elisabet I; Furebring, Mia et al.

Ingår i Scientific Reports, s. 17262, 2025

• DOI för Utilizing gentamicin concentrations to estimate glomerular filtration rate in intensive care unit patients.

A multicenter evaluation of a novel microfluidic rapid AST assay for Gram-negative bloodstream infections

Berinson, Benjamin; Davies, Emma; Torpner, Jessie; Flinkfeldt, Linnea et al.

Ingår i Journal of Clinical Microbiology, 2024

• DOI för A multicenter evaluation of a novel microfluidic rapid AST assay for Gram-negative bloodstream infections
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A Natural Language Processing Approach towards Harmonized Communication of Uncertainties Identified during the European Medicine Authorization Process

Verweij, Stefan; Haverhoek, Vincent; Bergman, Erik; Westman, Gabriel et al.

Ingår i Clinical Pharmacology and Therapeutics, s. 871-880, 2024

• DOI för A Natural Language Processing Approach towards Harmonized Communication of Uncertainties Identified during the European Medicine Authorization Process
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Antibiotic-induced microbiome disturbances in hematological patients undergoing hematopoietic stem cell transplantation: a prospective observational study

Montelin, Hanna; Hugerth, Luisa; Debelius, Justine; Melhus, Åsa et al.

2024

Bacteriuria and antibiotic use during the third wave of COVID-19 intensive care in Sweden

Karlsson, Philip A.; Bolin, Christian; Spång, Labolina; Frithiof, Robert et al.

Ingår i Infectious Diseases, s. 1-10, 2024

• DOI för Bacteriuria and antibiotic use during the third wave of COVID-19 intensive care in Sweden
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BK polyomavirus infection after kidney transplantation: Risk factors, viral transmission and immune response

Lorant, Camilla

2024

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Consensus Definitions of Cytomegalovirus (CMV) Infection and Disease in Transplant Patients Including Resistant and Refractory CMV for Use in Clinical Trials: 2024 Update From the Transplant Associated Virus Infections Forum

Ljungman, Per; Chemaly, Roy F.; Khawaya, Fareed; Alain, Sophie et al.

Ingår i Clinical Infectious Diseases, s. 787-794, 2024

• DOI för Consensus Definitions of Cytomegalovirus (CMV) Infection and Disease in Transplant Patients Including Resistant and Refractory CMV for Use in Clinical Trials: 2024 Update From the Transplant Associated Virus Infections Forum
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Diagnosis of external ventricular drainage related infections with real-time 16S PCR and third-generation 16S sequencing

Widen, Johan; Moren, Jakob; Mölling, Paula; Fagerström, Anna et al.

Ingår i Infectious Diseases, s. 521-530, 2024

• DOI för Diagnosis of external ventricular drainage related infections with real-time 16S PCR and third-generation 16S sequencing
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High-throughput phenotype-to-genotype testing of meningococcal carriage and disease isolates detects genetic determinants of disease-relevant phenotypic traits

Farzand, Robeena; Kimani, Mercy W.; Mourkas, Evangelos; Jama, Abdullahi et al.

Ingår i mBio, 2024

• DOI för High-throughput phenotype-to-genotype testing of meningococcal carriage and disease isolates detects genetic determinants of disease-relevant phenotypic traits
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Identification of novel and potent inhibitors of SARS-CoV-2 main protease from DNA-encoded chemical libraries

Akaberi, Dario; Pourghasemi, Monireh; Krambrich, Janina; Berger, Julia et al.

Ingår i Antimicrobial Agents and Chemotherapy, s. 1-18, 2024

• DOI för Identification of novel and potent inhibitors of SARS-CoV-2 main protease from DNA-encoded chemical libraries
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Impact of ceftibuten, ciprofloxacin, nitrofurantoin, pivmecillinam and trimethoprim-sulphamethoxazole on the intestinal microbiota and resistome: a randomized controlled trial with healthy adults

Montelin, Hanna; Debelius, Justine; Sewunet, Tsegaye; Nääs, Anja et al.

2024

Impact of porin deficiency on the synergistic potential of colistin in combination with β-lactam/β-lactamase inhibitors against ESBL- and carbapenemase-producing Klebsiella pneumoniae

Allander, Lisa; Vickberg, Karin; Fermér, Elin; Söderhäll, Thomas et al.

Ingår i Antimicrobial Agents and Chemotherapy, 2024

• DOI för Impact of porin deficiency on the synergistic potential of colistin in combination with β-lactam/β-lactamase inhibitors against ESBL- and carbapenemase-producing Klebsiella pneumoniae
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Influenza-associated invasive aspergillosis in patients admitted to the intensive care unit in Sweden: a prospective multicentre cohort study

Krifors, Anders; Blennow, Ola; Påhlman, Lisa I; Gille-Johnson, Patrik et al.

Ingår i Infectious Diseases, s. 110-115, 2024

• DOI för Influenza-associated invasive aspergillosis in patients admitted to the intensive care unit in Sweden: a prospective multicentre cohort study
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Invasive Candida infections: Treatment of the critically ill and patients with infective endocarditis

Kurland, Siri

2024

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Knowledge gaps related to HIV and condom use for preventing pregnancy: a cross-sectional study among migrants in Sweden

Tirado, Veronika; Orsini, Nicola; Strömdahl, Susanne; Hanson, Claudia et al.

Ingår i BMC Public Health, 2024

• DOI för Knowledge gaps related to HIV and condom use for preventing pregnancy: a cross-sectional study among migrants in Sweden
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Lung function at 1-year follow-up in patients with persistent dyspnea after mild COVID-19: comparisons with moderate and critical COVID-19

Kisiel, Marta A.; Neiderud, Carl-Johan; Ekbom, Emil; Westman, Gabriel et al.

Ingår i Upsala Journal of Medical Sciences, 2024

• DOI för Lung function at 1-year follow-up in patients with persistent dyspnea after mild COVID-19: comparisons with moderate and critical COVID-19
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Management of cytomegalovirus infections - Swedish recommendations 2023

Swartling, Lisa; Engman, Mona-Lisa; Eriksen, Jaran; Fischler, Bjoern et al.

Ingår i Infectious Diseases, s. 907-917, 2024

• DOI för Management of cytomegalovirus infections - Swedish recommendations 2023

Molecular characteristics, fitness, and virulence of high-risk and non-high-risk clones of carbapenemase-producing Klebsiella pneumoniae

Örmälä-Tiznado, Anni-Maria; Allander, Lisa; Maatallah, Makaoui; Kabir, Muhammad Humaun et al.

Ingår i Microbiology Spectrum, s. 1-14, 2024

• DOI för Molecular characteristics, fitness, and virulence of high-risk and non-high-risk clones of carbapenemase-producing Klebsiella pneumoniae
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Optimizing Signal Management in a Vaccine Adverse Event Reporting System: A Proof-of-Concept with COVID-19 Vaccines Using Signs, Symptoms, and Natural Language Processing

Dong, Guojun; Bate, Andrew; Haguinet, François; Westman, Gabriel et al.

Ingår i Drug Safety, s. 173-182, 2024

• DOI för Optimizing Signal Management in a Vaccine Adverse Event Reporting System: A Proof-of-Concept with COVID-19 Vaccines Using Signs, Symptoms, and Natural Language Processing
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Perceptions of Carriership of Extended-Spectrum Beta-Lactamase (ESBL)-Producing Bacteria: A Qualitative Study

Uggla, Karin; Razmi, Robin; Järhult, Josef D.; Lindberg, Maria

Ingår i Nursing Reports, s. 1819-1827, 2024

• DOI för Perceptions of Carriership of Extended-Spectrum Beta-Lactamase (ESBL)-Producing Bacteria: A Qualitative Study
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Prevalence and associated factors for poor mental health among young migrants in Sweden: a cross-sectional study

Causevic, Sara; Ekström, Anna Mia; Orsini, Nicola; Kagesten, Anna et al.

Ingår i Global Health Action, 2024

• DOI för Prevalence and associated factors for poor mental health among young migrants in Sweden: a cross-sectional study
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Proximity to humans is associated with antimicrobial-resistant enteric pathogens in wild bird microbiomes

Mourkas, Evangelos; Valdebenito, José O.; Marsh, Hannah; Hitchings, Matthew D. et al.

Ingår i Current Biology, s. 3955-39650000, 2024

• DOI för Proximity to humans is associated with antimicrobial-resistant enteric pathogens in wild bird microbiomes

Pulmonary embolism after SARS-CoV-2 vaccination

Zethelius, Björn; Attelind, Sofia; Westman, Gabriel; Ljung, Rickard et al.

Ingår i Vaccine: X, 2024

• DOI för Pulmonary embolism after SARS-CoV-2 vaccination
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Quantifying combined effects of colistin and ciprofloxacin against Escherichia coli in an in silico pharmacokinetic-pharmacodynamic model

Zhao, Chenyan; Kristoffersson, Anders N.; Khan, David D.; Lagerbäck, Pernilla et al.

Ingår i Scientific Reports, 2024

• DOI för Quantifying combined effects of colistin and ciprofloxacin against Escherichia coli in an in silico pharmacokinetic-pharmacodynamic model
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Response to comment on 'International consensus recommendations for the use of prolonged-infusion β-lactams endorsed by the American College of Clinical Pharmacy (ACCP), the British Society for Antimicrobial Chemotherapy (BSAC), the Cystic Fibrosis Foundation (CFF), the European Society of Clinical Microbiology and Infectious Diseases (ESCMID), the Infectious Diseases Society of American (IDSA), the Society of Critical Care Medicine (SCCM), and the Society of Infectious Diseases Pharmacists'

Hong, Lisa T.; Downes, Kevin J.; Fakhriravari, Alireza; Abdul-Mutakabbir, Jacinda C. et al.

Ingår i Pharmacotherapy, s. 208-209, 2024

• DOI för Response to comment on 'International consensus recommendations for the use of prolonged-infusion β-lactams endorsed by the American College of Clinical Pharmacy (ACCP), the British Society for Antimicrobial Chemotherapy (BSAC), the Cystic Fibrosis Foundation (CFF), the European Society of Clinical Microbiology and Infectious Diseases (ESCMID), the Infectious Diseases Society of American (IDSA), the Society of Critical Care Medicine (SCCM), and the Society of Infectious Diseases Pharmacists'

Sharing of cmeRABC alleles between C. coli and C. jejuni associated with extensive drug resistance in Campylobacter isolates from infants and poultry in the Peruvian Amazon

Cooper, Kerry K.; Mourkas, Evangelos; Schiaffino, Francesca; Parker, Craig T. et al.

Ingår i mBio, 2024

• DOI för Sharing of cmeRABC alleles between C. coli and C. jejuni associated with extensive drug resistance in Campylobacter isolates from infants and poultry in the Peruvian Amazon
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The 2024 political declaration on antimicrobial resistance needs bold targets

Tangcharoensathien, Viroj; Cars, Otto; Lekagul, Angkana

Ingår i BMJ. British Medical Journal, 2024

• DOI för The 2024 political declaration on antimicrobial resistance needs bold targets

The risk factors associated with post-transplantation BKPyV nephropathy and BKPyV DNAemia: a prospective study in kidney transplant recipients

Lorant, Camilla; Zigmantaviciute, Justina; Ali, Naima; Bonnevier, Ursa et al.

Ingår i BMC Infectious Diseases, 2024

• DOI för The risk factors associated with post-transplantation BKPyV nephropathy and BKPyV DNAemia: a prospective study in kidney transplant recipients
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Treatment, outcomes and characterization of pathogens in urinary tract infections caused by ESBL-producing Enterobacterales: a prospective multicentre study

Montelin, Hanna; Camporeale, Angela; Hallgren, Anna; Angelin, Martin et al.

Ingår i Journal of Antimicrobial Chemotherapy, s. 531-538, 2024

• DOI för Treatment, outcomes and characterization of pathogens in urinary tract infections caused by ESBL-producing Enterobacterales: a prospective multicentre study
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Tumor Predisposing Post-Zygotic Chromosomal Alterations in Bladder Cancer-Insights from Histologically Normal Urothelium

Stankowska, Wiktoria; Sarkisyan, Daniil; Bruhn-Olszewska, Bozena; Duzowska, Katarzyna et al.

Ingår i Cancers, 2024

• DOI för Tumor Predisposing Post-Zygotic Chromosomal Alterations in Bladder Cancer-Insights from Histologically Normal Urothelium
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Understanding veterinary drug shop workers' knowledge and practices to identify drivers of antibiotic use in Vietnamese livestock farms

Nohrborg, Sandra; Nguyen-Thi, Thinh; Xuan, Huyen Nguyen; Hai, Yen Luu Thi et al.

Ingår i Veterinary medicine and science, 2024

• DOI för Understanding veterinary drug shop workers' knowledge and practices to identify drivers of antibiotic use in Vietnamese livestock farms
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Understanding Vietnamese chicken farmers' knowledge and practices related to antimicrobial resistance using an item response theory approach

Nohrborg, Sandra; Nguyen-Thi, Thinh; Xuan, Huyen Nguyen; Lindahl, Johanna et al.

Ingår i Frontiers in Veterinary Science, 2024

• DOI för Understanding Vietnamese chicken farmers' knowledge and practices related to antimicrobial resistance using an item response theory approach
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Validation of a web-based self-administered test for cognitive assessment in a Swedish geriatric setting

Rystedt, Einar; Moren, Jakob; Lindbäck, Johan; Tedim Cruz, Vitor et al.

Ingår i PLOS ONE, 2024

• DOI för Validation of a web-based self-administered test for cognitive assessment in a Swedish geriatric setting
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Whole-Genome Sequencing of Invasive Neonatal Escherichia coli From Uppsala County, Sweden

Heydecke, Anna; Myrelid, Åsa; Normann, Erik; Gullsby, Karolina et al.

Ingår i Journal of Infectious Diseases, 2024

• DOI för Whole-Genome Sequencing of Invasive Neonatal Escherichia coli From Uppsala County, Sweden
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A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks

Naguib, Mahmoud; Eriksson, Per; Jax, Elinor; Wille, Michelle et al.

Ingår i Microbiology Spectrum, 2023

• DOI för A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks
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A full-document analysis of the semantic relation between European Public Assessment Reports and EMA guidelines using a BERT language model

Bergman, Erik; Pasmooij, Anna Maria Gerdina; Mol, Peter G. M.; Westman, Gabriel

Ingår i PLOS ONE, 2023

• DOI för A full-document analysis of the semantic relation between European Public Assessment Reports and EMA guidelines using a BERT language model
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A Rough Colony Morphology of Mycobacterium abscessus Is Associated With Cavitary Pulmonary Disease and Poor Clinical Outcome

Hedin, Wilhelm; Fröberg, Gabrielle; Fredman, Kalle; Chryssanthou, Erja et al.

Ingår i Journal of Infectious Diseases, s. 820-827, 2023

• DOI för A Rough Colony Morphology of Mycobacterium abscessus Is Associated With Cavitary Pulmonary Disease and Poor Clinical Outcome
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