Andrei Demkiv
Postdoctoral position at Department of Cell and Molecular Biology; Computational Biology and Bioinformatics
- Visiting address:
- Husargatan 3
752 37 Uppsala - Postal address:
- Box 596
751 24 UPPSALA
Publications
Recent publications
Redefining the Limits of Functional Continuity in the Early Evolution of P-Loop NTPases
Part of Molecular biology and evolution, 2025
- DOI for Redefining the Limits of Functional Continuity in the Early Evolution of P-Loop NTPases
- Download full text (pdf) of Redefining the Limits of Functional Continuity in the Early Evolution of P-Loop NTPases
Part of JACS Au, p. 3519-3536, 2024
- DOI for Catalytic Redundancies and Conformational Plasticity Drives Selectivity and Promiscuity in Quorum Quenching Lactonases
- Download full text (pdf) of Catalytic Redundancies and Conformational Plasticity Drives Selectivity and Promiscuity in Quorum Quenching Lactonases
Computational Modelling of Protein Dynamics, Specificity and Evolution
2024
Q-RepEx: A Python pipeline to increase the sampling of empirical valence bond simulations
Part of Journal of Molecular Graphics and Modelling, 2023
- DOI for Q-RepEx: A Python pipeline to increase the sampling of empirical valence bond simulations
- Download full text (pdf) of Q-RepEx: A Python pipeline to increase the sampling of empirical valence bond simulations
Exploiting enzyme evolution for computational protein design
Part of TIBS -Trends in Biochemical Sciences. Regular ed., p. 375-389, 2022
- DOI for Exploiting enzyme evolution for computational protein design
- Download full text (pdf) of Exploiting enzyme evolution for computational protein design
All publications
Articles in journal
Redefining the Limits of Functional Continuity in the Early Evolution of P-Loop NTPases
Part of Molecular biology and evolution, 2025
- DOI for Redefining the Limits of Functional Continuity in the Early Evolution of P-Loop NTPases
- Download full text (pdf) of Redefining the Limits of Functional Continuity in the Early Evolution of P-Loop NTPases
Part of JACS Au, p. 3519-3536, 2024
- DOI for Catalytic Redundancies and Conformational Plasticity Drives Selectivity and Promiscuity in Quorum Quenching Lactonases
- Download full text (pdf) of Catalytic Redundancies and Conformational Plasticity Drives Selectivity and Promiscuity in Quorum Quenching Lactonases
Q-RepEx: A Python pipeline to increase the sampling of empirical valence bond simulations
Part of Journal of Molecular Graphics and Modelling, 2023
- DOI for Q-RepEx: A Python pipeline to increase the sampling of empirical valence bond simulations
- Download full text (pdf) of Q-RepEx: A Python pipeline to increase the sampling of empirical valence bond simulations
Articles, review/survey
Exploiting enzyme evolution for computational protein design
Part of TIBS -Trends in Biochemical Sciences. Regular ed., p. 375-389, 2022
- DOI for Exploiting enzyme evolution for computational protein design
- Download full text (pdf) of Exploiting enzyme evolution for computational protein design