Linnea Smeds

The evolutionary history of grey wolf Y chromosomes

Smeds, Linnea; Kojola, Ilpo; Ellegren, Hans

Part of Molecular Ecology, p. 2173-2191, 2019

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High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree

Smeds, Linnéa; Mugal, Carina F; Qvarnström, Anna; Ellegren, Hans

Part of PLOS Genetics, 2016

• DOI for High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree
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Direct estimate of the rate of germline mutation in a bird

Smeds, Linnea; Qvarnström, Anna; Ellegren, Hans

Part of Genome Research, p. 1211-1218, 2016

• DOI for Direct estimate of the rate of germline mutation in a bird
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Evolutionary analysis of the female-specific avian W chromosome

Smeds, Linnea; Warmuth, Vera; Bolivar, Paulina; Uebbing, Severin et al.

Part of Nature Communications, 2015

• DOI for Evolutionary analysis of the female-specific avian W chromosome
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Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes

Smeds, Linnea; Kawakami, Takeshi; Burri, Reto; Bolivar, Paulina et al.

Part of Nature Communications, p. 5448, 2014

• DOI for Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes

Comparing Genetic N_e Reconstructions Over Time With Long-Time Wolf Monitoring Data in Two Populations

Perez-Sorribes, Laia; Villar-Yanez, Pau; Smeds, Linnea; Mergeay, Joachim

Part of Evolutionary Applications, 2024

• DOI for Comparing Genetic N_e Reconstructions Over Time With Long-Time Wolf Monitoring Data in Two Populations
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Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration

Smeds, Linnea; Huson, Lars S. A.; Ellegren, Hans

Part of Evolutionary Applications, 2024

• DOI for Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration
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Conservation genomics in inbred Scandinavian wolves using bioinformatic methods

Smeds, Linnéa

2024

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From high masked to high realized genetic load in inbred Scandinavian wolves

Smeds, Linnéa; Ellegren, Hans

Part of Molecular Ecology, p. 1567-1580, 2023

• DOI for From high masked to high realized genetic load in inbred Scandinavian wolves
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Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations

Smeds, Linnea; Aspi, Jouni; Berglund, Jonas; Kojola, Ilpo et al.

Part of Evolutionary Applications, p. 721-734, 2021

• DOI for Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations
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Comparing Genetic N_e Reconstructions Over Time With Long-Time Wolf Monitoring Data in Two Populations

Perez-Sorribes, Laia; Villar-Yanez, Pau; Smeds, Linnea; Mergeay, Joachim

Part of Evolutionary Applications, 2024

• DOI for Comparing Genetic N_e Reconstructions Over Time With Long-Time Wolf Monitoring Data in Two Populations
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Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration

Smeds, Linnea; Huson, Lars S. A.; Ellegren, Hans

Part of Evolutionary Applications, 2024

• DOI for Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration
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From high masked to high realized genetic load in inbred Scandinavian wolves

Smeds, Linnéa; Ellegren, Hans

Part of Molecular Ecology, p. 1567-1580, 2023

• DOI for From high masked to high realized genetic load in inbred Scandinavian wolves
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Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations

Smeds, Linnea; Aspi, Jouni; Berglund, Jonas; Kojola, Ilpo et al.

Part of Evolutionary Applications, p. 721-734, 2021

• DOI for Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations
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Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis)

Nadachowska-Brzyska, Krystyna; Dutoit, Ludovic; Smeds, Linnea; Kardos, Martin et al.

Part of Molecular Ecology, p. 3965-3973, 2021

• DOI for Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis)
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The evolutionary history of grey wolf Y chromosomes

Smeds, Linnea; Kojola, Ilpo; Ellegren, Hans

Part of Molecular Ecology, p. 2173-2191, 2019

• DOI for The evolutionary history of grey wolf Y chromosomes
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Genome sequencing and conservation genomics in the Scandinavian wolverine population

Ekblom, Robert; Brechlin, Birte; Persson, Jens; Smeds, Linnea et al.

Part of Conservation Biology, p. 1301-1312, 2018

• DOI for Genome sequencing and conservation genomics in the Scandinavian wolverine population
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Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes

Suh, Alexander; Smeds, Linnea; Ellegren, Hans

Part of Molecular Ecology, p. 99-111, 2018

• DOI for Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes
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Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome

Dutoit, Ludovic; Mugal, Carina; Bolivar, Paulina; Wang, Mi et al.

Part of Molecular Ecology, p. 3572-3581, 2018

• DOI for Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome
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Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds

Kawakami, Takeshi; Mugal, Carina; Suh, Alexander; Nater, Alexander et al.

Part of Molecular Ecology, p. 4158-4172, 2017

• DOI for Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds
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High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree

Smeds, Linnéa; Mugal, Carina F; Qvarnström, Anna; Ellegren, Hans

Part of PLOS Genetics, 2016

• DOI for High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree
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Direct estimate of the rate of germline mutation in a bird

Smeds, Linnea; Qvarnström, Anna; Ellegren, Hans

Part of Genome Research, p. 1211-1218, 2016

• DOI for Direct estimate of the rate of germline mutation in a bird
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Evolutionary analysis of the female-specific avian W chromosome

Smeds, Linnea; Warmuth, Vera; Bolivar, Paulina; Uebbing, Severin et al.

Part of Nature Communications, 2015

• DOI for Evolutionary analysis of the female-specific avian W chromosome
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Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait

Husby, Arild; Kawakami, Takeshi; Ronnegard, Lars; Smeds, Linnea et al.

Part of Proceedings of the Royal Society of London. Biological Sciences, 2015

• DOI for Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait
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A Transcriptome Derived Female-Specific Marker from the Invasive Western Mosquitofish (Gambusia affinis)

Lamatsch, Dunja K.; Adolfsson, Sofia; Senior, Alistair M.; Christiansen, Guntram et al.

Part of PLOS ONE, 2015

• DOI for A Transcriptome Derived Female-Specific Marker from the Invasive Western Mosquitofish (Gambusia affinis)
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Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences

Nadachowska-Brzyska, Krystyna; Li, Cai; Smeds, Linnea; Zhang, Guojie et al.

Part of Current Biology, p. 1375-1380, 2015

• DOI for Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences
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The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds

Suh, Alexander; Smeds, Linnea; Ellegren, Hans

Part of PLoS biology, 2015

• DOI for The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
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Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data

Nater, Alexander; Burri, Reto; Kawakami, Takeshi; Smeds, Linnea et al.

Part of Systematic Biology, p. 1000-1017, 2015

• DOI for Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers

Burri, Reto; Nater, Alexander; Kawakami, Takeshi; Mugal, Carina F. et al.

Part of Genome Research, p. 1656-1665, 2015

• DOI for Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
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Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria

Ekblom, Robert; Smeds, Linnea; Ellegren, Hans

Part of BMC Genomics, p. 467, 2014

• DOI for Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria
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Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes

Smeds, Linnea; Kawakami, Takeshi; Burri, Reto; Bolivar, Paulina et al.

Part of Nature Communications, p. 5448, 2014

• DOI for Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes

Whole-genome analyses resolve early branches in the tree of life of modern birds

Jarvis, Erich D.; Mirarab, Siavash; Aberer, Andre J.; Li, Bo et al.

Part of Science, p. 1320-1331, 2014

• DOI for Whole-genome analyses resolve early branches in the tree of life of modern birds

Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data

Nadachowska-Brzyska, Krystyna; Burri, Reto; Olason, Pall; Kawakami, Takeshi et al.

Part of PLOS Genetics, 2013

• DOI for Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data
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The genomic landscape of species divergence in Ficedula flycatchers

Ellegren, Hans; Smeds, Linnea; Burri, Reto; Ólason, Páll I. et al.

Part of Nature, p. 756-760, 2012

• DOI for The genomic landscape of species divergence in Ficedula flycatchers

ConDeTri: A content dependent read trimmer for Illumina data

Smeds, Linnea; Künstner, Axel

Part of PLOS ONE, 2011

• DOI for ConDeTri: A content dependent read trimmer for Illumina data
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The genome of a songbird

Warren, Wesley C; Clayton, David F; Ellegren, Hans; Arnold, Arthur P et al.

Part of Nature, p. 757-762, 2010

• DOI for The genome of a songbird

PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers

Nadachowska-Brzyska, Krystyna; Burri, Reto; Smeds, Linnea; Ellegren, Hans

Part of Molecular Ecology, p. 1058-1072, 2016

• DOI for PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers
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A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution

Kawakami, Takeshi; Smeds, Linnea; Backstrom, Niclas; Husby, Arild et al.

Part of Molecular Ecology, p. 4035-4058, 2014

• DOI for A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
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Conservation genomics in inbred Scandinavian wolves using bioinformatic methods

Smeds, Linnéa

2024

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