Linnea Smeds
Bioinformatician at Department of Ecology and Genetics; Evolutionary Biology
- Telephone:
- +46 18 471 64 17
- E-mail:
- Linnea.Smeds@ebc.uu.se
- Visiting address:
- Evolutionsbiologiskt Centrum
Norbyvägen 18D
752 36 UPPSALA - Postal address:
- Evolutionsbiologiskt centrum
Norbyvägen 18D
752 36 UPPSALA
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Short presentation
This text is not available in English, therefore the Swedish version is shown.
I am a bioinformatician and a PhD student in the Ellegren lab group and mainly work with wolf genomics. My current work involves comparing the recently established and highly inbred Scandinavian wolf population with wolves from Finland and Russia.
Publications
Selection of publications
- The evolutionary history of grey wolf Y chromosomes (2019)
- Direct estimate of the rate of germline mutation in a bird (2016)
- High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree (2016)
- Evolutionary analysis of the female-specific avian W chromosome (2015)
- Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes (2014)
Recent publications
- Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration (2024)
- Conservation genomics in inbred Scandinavian wolves using bioinformatic methods (2024)
- From high masked to high realized genetic load in inbred Scandinavian wolves (2023)
- Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis) (2021)
- Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations (2021)
All publications
Articles
- Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration (2024)
- From high masked to high realized genetic load in inbred Scandinavian wolves (2023)
- Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis) (2021)
- Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations (2021)
- The evolutionary history of grey wolf Y chromosomes (2019)
- Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome (2018)
- Genome sequencing and conservation genomics in the Scandinavian wolverine population (2018)
- Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes (2018)
- Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds (2017)
- PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers (2016)
- Direct estimate of the rate of germline mutation in a bird (2016)
- High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree (2016)
- Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers (2015)
- Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait (2015)
- A Transcriptome Derived Female-Specific Marker from the Invasive Western Mosquitofish (Gambusia affinis) (2015)
- Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences (2015)
- Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data (2015)
- Evolutionary analysis of the female-specific avian W chromosome (2015)
- The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds (2015)
- Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria (2014)
- Whole-genome analyses resolve early branches in the tree of life of modern birds (2014)
- A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution (2014)
- Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes (2014)
- Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data (2013)
- The genomic landscape of species divergence in Ficedula flycatchers (2012)
- ConDeTri (2011)
- The genome of a songbird (2010)
Books
