Pascal Milesi

Recurrent hybridization and gene flow shaped Norway and Siberian spruce evolutionary history over multiple glacial cycles

Zhou, Qiujie; Karunarathne, Piyal; Andersson-Li, Lili; Chen, Chen et al.

Ingår i Molecular Ecology, 2024

• DOI för Recurrent hybridization and gene flow shaped Norway and Siberian spruce evolutionary history over multiple glacial cycles
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Hybridization mediated range expansion and climate change resilience in two keystone tree species of boreal forests

Karunarathne, Piyal; Zhou, Qiujie; Lascoux, Martin; Milesi, Pascal

Ingår i Global Change Biology, 2024

• DOI för Hybridization mediated range expansion and climate change resilience in two keystone tree species of boreal forests
• Ladda ner fulltext (pdf) av Hybridization mediated range expansion and climate change resilience in two keystone tree species of boreal forests

Resilience of genetic diversity in forest trees over the Quaternary

Milesi, Pascal; Kastally, Chedly; Dauphin, Benjamin; Cervantes, Sandra et al.

Ingår i Nature Communications, 2024

• DOI för Resilience of genetic diversity in forest trees over the Quaternary
• Ladda ner fulltext (pdf) av Resilience of genetic diversity in forest trees over the Quaternary

A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: ‘rCNV’, a versatile r package for paralogue and CNV detection

Karunarathne, Piyal; Zhou, Qiujie; Schliep, Klaus; Milesi, Pascal

Ingår i Molecular Ecology Resources, s. 1772-1789, 2023

• DOI för A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: ‘rCNV’, a versatile r package for paralogue and CNV detection
• Ladda ner fulltext (pdf) av A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: ‘rCNV’, a versatile r package for paralogue and CNV detection

Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes

Milesi, Pascal; Claret, Jean-Loup; Unal, Sandra; Weill, Mylène et al.

Ingår i Parasites & Vectors, 2022

• DOI för Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes
• Ladda ner fulltext (pdf) av Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes

BioRssay: an R package for analyses of bioassays and probit graphs

Karunarathne, Piyal; Pocquet, Nicolas; Labbe, Pierrick; Milesi, Pascal

Ingår i Parasites & Vectors, 2022

• DOI för BioRssay: an R package for analyses of bioassays and probit graphs
• Ladda ner fulltext (pdf) av BioRssay: an R package for analyses of bioassays and probit graphs

Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees

Milesi, Pascal; Berlin, Mats; Chen, Jun; Orsucci, Marion et al.

Ingår i Evolutionary Applications, s. 1946-1959, 2019

• DOI för Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees
• Ladda ner fulltext (pdf) av Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees

The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation

Milesi, Pascal; Assogba, Benoit S.; Atyame, Celestine M.; Pocquet, Nicolas et al.

Ingår i Molecular Ecology, s. 493-507, 2018

• DOI för The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation
• Ladda ner fulltext (pdf) av The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation

Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management

Söderquist, Linus; Joffard, Nina; Scofield, Douglas; Milesi, Pascal et al.

Ingår i Ecography, 2025

• DOI för Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management
• Ladda ner fulltext (pdf) av Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management

When numbers matter: Rethinking the role of gene duplication on short evolutionary timescales

Lindstedt, Freja; Zhou, Qiujie; Milesi, Pascal

Ingår i American Journal of Botany, 2025

• DOI för When numbers matter: Rethinking the role of gene duplication on short evolutionary timescales
• Ladda ner fulltext (pdf) av When numbers matter: Rethinking the role of gene duplication on short evolutionary timescales

The genetic architecture of repeated local adaptation to climate in distantly related plants

Whiting, James R.; Booker, Tom R.; Rougeux, Clement; Lind, Brandon M. et al.

Ingår i Nature Ecology & Evolution, 2024

• DOI för The genetic architecture of repeated local adaptation to climate in distantly related plants
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Despite structural identity, ace-1 heterogenous duplication resistance alleles are quite diverse in Anopheles mosquitoes

Claret, Jean-Loup; Di-Liegro, Marion; Namias, Alice; Assogba, Benoit et al.

Ingår i Heredity, s. 179-191, 2024

• DOI för Despite structural identity, ace-1 heterogenous duplication resistance alleles are quite diverse in Anopheles mosquitoes
• Ladda ner fulltext (pdf) av Despite structural identity, ace-1 heterogenous duplication resistance alleles are quite diverse in Anopheles mosquitoes

Recurrent hybridization and gene flow shaped Norway and Siberian spruce evolutionary history over multiple glacial cycles

Zhou, Qiujie; Karunarathne, Piyal; Andersson-Li, Lili; Chen, Chen et al.

Ingår i Molecular Ecology, 2024

• DOI för Recurrent hybridization and gene flow shaped Norway and Siberian spruce evolutionary history over multiple glacial cycles
• Ladda ner fulltext (pdf) av Recurrent hybridization and gene flow shaped Norway and Siberian spruce evolutionary history over multiple glacial cycles

Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management

Söderquist, Linus; Joffard, Nina; Scofield, Douglas; Milesi, Pascal et al.

Ingår i Ecography, 2025

• DOI för Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management
• Ladda ner fulltext (pdf) av Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management

When numbers matter: Rethinking the role of gene duplication on short evolutionary timescales

Lindstedt, Freja; Zhou, Qiujie; Milesi, Pascal

Ingår i American Journal of Botany, 2025

• DOI för When numbers matter: Rethinking the role of gene duplication on short evolutionary timescales
• Ladda ner fulltext (pdf) av When numbers matter: Rethinking the role of gene duplication on short evolutionary timescales

The genetic architecture of repeated local adaptation to climate in distantly related plants

Whiting, James R.; Booker, Tom R.; Rougeux, Clement; Lind, Brandon M. et al.

Ingår i Nature Ecology & Evolution, 2024

• DOI för The genetic architecture of repeated local adaptation to climate in distantly related plants
• Ladda ner fulltext (pdf) av The genetic architecture of repeated local adaptation to climate in distantly related plants

Despite structural identity, ace-1 heterogenous duplication resistance alleles are quite diverse in Anopheles mosquitoes

Claret, Jean-Loup; Di-Liegro, Marion; Namias, Alice; Assogba, Benoit et al.

Ingår i Heredity, s. 179-191, 2024

• DOI för Despite structural identity, ace-1 heterogenous duplication resistance alleles are quite diverse in Anopheles mosquitoes
• Ladda ner fulltext (pdf) av Despite structural identity, ace-1 heterogenous duplication resistance alleles are quite diverse in Anopheles mosquitoes

Recurrent hybridization and gene flow shaped Norway and Siberian spruce evolutionary history over multiple glacial cycles

Zhou, Qiujie; Karunarathne, Piyal; Andersson-Li, Lili; Chen, Chen et al.

Ingår i Molecular Ecology, 2024

• DOI för Recurrent hybridization and gene flow shaped Norway and Siberian spruce evolutionary history over multiple glacial cycles
• Ladda ner fulltext (pdf) av Recurrent hybridization and gene flow shaped Norway and Siberian spruce evolutionary history over multiple glacial cycles

Hybridization mediated range expansion and climate change resilience in two keystone tree species of boreal forests

Karunarathne, Piyal; Zhou, Qiujie; Lascoux, Martin; Milesi, Pascal

Ingår i Global Change Biology, 2024

• DOI för Hybridization mediated range expansion and climate change resilience in two keystone tree species of boreal forests
• Ladda ner fulltext (pdf) av Hybridization mediated range expansion and climate change resilience in two keystone tree species of boreal forests

Resilience of genetic diversity in forest trees over the Quaternary

Milesi, Pascal; Kastally, Chedly; Dauphin, Benjamin; Cervantes, Sandra et al.

Ingår i Nature Communications, 2024

• DOI för Resilience of genetic diversity in forest trees over the Quaternary
• Ladda ner fulltext (pdf) av Resilience of genetic diversity in forest trees over the Quaternary

Complex Polyploids: Origins, Genomic Composition, and Role of Introgressed Alleles

Leal, J Luis; Milesi, Pascal; Hodková, Eva; Zhou, Qiujie et al.

Ingår i Systematic Biology, s. 392-418, 2024

• DOI för Complex Polyploids: Origins, Genomic Composition, and Role of Introgressed Alleles
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A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: ‘rCNV’, a versatile r package for paralogue and CNV detection

Karunarathne, Piyal; Zhou, Qiujie; Schliep, Klaus; Milesi, Pascal

Ingår i Molecular Ecology Resources, s. 1772-1789, 2023

• DOI för A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: ‘rCNV’, a versatile r package for paralogue and CNV detection
• Ladda ner fulltext (pdf) av A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: ‘rCNV’, a versatile r package for paralogue and CNV detection

Diversity and enrichment of breeding material for resilience in European forests

Olsson, Sanna; Dauphin, Benjamin; Jorge, Veronique; Grivet, Delphine et al.

Ingår i Forest Ecology and Management, 2023

• DOI för Diversity and enrichment of breeding material for resilience in European forests
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Between but Not Within-Species Variation in the Distribution of Fitness Effects

James, Jennifer; Kastally, Chedly; Budde, Katharina B.; Gonzalez-Martinez, Santiago C. et al.

Ingår i Molecular biology and evolution, 2023

• DOI för Between but Not Within-Species Variation in the Distribution of Fitness Effects
• Ladda ner fulltext (pdf) av Between but Not Within-Species Variation in the Distribution of Fitness Effects

Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences

Leal, Luis J.; Milesi, Pascal; Salojarvi, Jarkko; Lascoux, Martin

Ingår i Systematic Biology, s. 372-390, 2023

• DOI för Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences
• Ladda ner fulltext (pdf) av Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences

Divergent selection predating the Last Glacial Maximum mainly acted on macro‐phenotypes in Norway spruce

Tiret, Mathieu; Olsson, Lars; Grahn, Thomas; Karlsson, Bo et al.

Ingår i Evolutionary Applications, s. 163-172, 2023

• DOI för Divergent selection predating the Last Glacial Maximum mainly acted on macro‐phenotypes in Norway spruce
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Genomics and adaptation in forest ecosystems

Neophytou, Charalambos; Heer, Katrin; Milesi, Pascal; Peter, Martina et al.

Ingår i Tree Genetics & Genomes, 2022

• DOI för Genomics and adaptation in forest ecosystems
• Ladda ner fulltext (pdf) av Genomics and adaptation in forest ecosystems

The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe

Cornille, Amandine; Tiret, Mathieu; Salcedo, Adriana; Huang, Huirun R. et al.

Ingår i AoB Plants, 2022

• DOI för The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe
• Ladda ner fulltext (pdf) av The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe

Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes

Milesi, Pascal; Claret, Jean-Loup; Unal, Sandra; Weill, Mylène et al.

Ingår i Parasites & Vectors, 2022

• DOI för Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes
• Ladda ner fulltext (pdf) av Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes

BioRssay: an R package for analyses of bioassays and probit graphs

Karunarathne, Piyal; Pocquet, Nicolas; Labbe, Pierrick; Milesi, Pascal

Ingår i Parasites & Vectors, 2022

• DOI för BioRssay: an R package for analyses of bioassays and probit graphs
• Ladda ner fulltext (pdf) av BioRssay: an R package for analyses of bioassays and probit graphs

Teasing apart the joint effect of demography and natural selection in the birth of a contact zone

Li, Lili; Milesi, Pascal; Tiret, Mathieu; Chen, Jun et al.

Ingår i New Phytologist, s. 1976-1987, 2022

• DOI för Teasing apart the joint effect of demography and natural selection in the birth of a contact zone
• Ladda ner fulltext (pdf) av Teasing apart the joint effect of demography and natural selection in the birth of a contact zone

Norway spruce postglacial recolonization of Fennoscandia

Nota, Kevin; Klaminder, Jonatan; Milesi, Pascal; Bindler, Richard et al.

Ingår i Nature Communications, 2022

• DOI för Norway spruce postglacial recolonization of Fennoscandia
• Ladda ner fulltext (pdf) av Norway spruce postglacial recolonization of Fennoscandia

How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus

Zhang, Zebin; Kryvokhyzha, Dmytro; Orsucci, Marion; Glemin, Sylvain et al.

Ingår i New Phytologist, s. 2344-2357, 2022

• DOI för How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus
• Ladda ner fulltext (pdf) av How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus

Killing two enemies with one stone?: Genomics of resistance to two sympatric pathogens in Norway spruce

Capador‐Barreto, Hernán D.; Bernhardsson, Carolina; Milesi, Pascal; Vos, Ingrid et al.

Ingår i Molecular Ecology, s. 4433-4447, 2021

• DOI för Killing two enemies with one stone?: Genomics of resistance to two sympatric pathogens in Norway spruce
• Ladda ner fulltext (pdf) av Killing two enemies with one stone?: Genomics of resistance to two sympatric pathogens in Norway spruce

The GenTree Leaf Collection: Inter- and intraspecific leaf variation in seven forest tree species in Europe

Benavides, Raquel; Carvalho, Barbara; Bastias, Cristina C.; Lopez-Quiroga, David et al.

Ingår i Global Ecology and Biogeography, s. 590-597, 2021

• DOI för The GenTree Leaf Collection: Inter- and intraspecific leaf variation in seven forest tree species in Europe
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Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis

Chen, Zhi-Qiang; Zan, Yanjun; Milesi, Pascal; Zhou, Linghua et al.

Ingår i Genome Biology, 2021

• DOI för Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis
• Ladda ner fulltext (pdf) av Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis

The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species

Opgenoorth, Lars; Benjamin, Dauphin; Benavides, Raquel; Heer, Katrin et al.

Ingår i GigaScience, 2021

• DOI för The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species
• Ladda ner fulltext (pdf) av The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species

Shift in ecological strategy helps marginal populations of shepherd's purse (Capsella bursa-pastoris) to overcome a high genetic load

Orsucci, Marion; Milesi, Pascal; Hansen, Johanna; Girodolle, Johanna et al.

Ingår i Proceedings of the Royal Society of London. Biological Sciences, 2020

• DOI för Shift in ecological strategy helps marginal populations of shepherd's purse (Capsella bursa-pastoris) to overcome a high genetic load
• Ladda ner fulltext (pdf) av Shift in ecological strategy helps marginal populations of shepherd's purse (Capsella bursa-pastoris) to overcome a high genetic load

High genetic diversity but no geographical structure of Aedes albopictus populations in Réunion Island

Latreille, Anne C.; Milesi, Pascal; Magalon, Hélène; Mavingui, Patrick et al.

Ingår i Parasites & Vectors, 2019

• DOI för High genetic diversity but no geographical structure of Aedes albopictus populations in Réunion Island
• Ladda ner fulltext (pdf) av High genetic diversity but no geographical structure of Aedes albopictus populations in Réunion Island

Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees

Milesi, Pascal; Berlin, Mats; Chen, Jun; Orsucci, Marion et al.

Ingår i Evolutionary Applications, s. 1946-1959, 2019

• DOI för Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees
• Ladda ner fulltext (pdf) av Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees

Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce

Chen, Jun; Li, Lili; Milesi, Pascal; Jansson, Gunnar et al.

Ingår i Evolutionary Applications, s. 1539-1551, 2019

• DOI för Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce
• Ladda ner fulltext (pdf) av Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce

Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris)

Kryvokhyzha, Dmytro; Milesi, Pascal; Duan, Tianlin; Orsucci, Marion et al.

Ingår i PLOS Genetics, 2019

• DOI för Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris)
• Ladda ner fulltext (pdf) av Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris)

The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation

Milesi, Pascal; Assogba, Benoit S.; Atyame, Celestine M.; Pocquet, Nicolas et al.

Ingår i Molecular Ecology, s. 493-507, 2018

• DOI för The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation
• Ladda ner fulltext (pdf) av The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation

Recent introductions, ancient recolonization events and local adaptation: a first fine-scale mapping of the population genetic structure of Norway spruce across Sweden

Li, Lili; Milesi, Pascal; Chen, Jun; Baison, John et al.

Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management

Söderquist, Linus; Joffard, Nina; Scofield, Douglas; Milesi, Pascal et al.

Conserved Evolutionary Response to Whole Genome Duplication in Angiosperms Revealed Using High Resolution Gene Expression Profiling

Leal, J. Luis; Hodková, Eva; Billhardt, Anja; Eklund, Magnus et al.

rCNV2: A composite-likelihood ratio method for robust detection of CNVs from SNPs data

Zhou, Qiujie; Lindstedt, Freja; Karunarathne, Piyal; Milesi, Pascal

Gene copy number variations are untaped key players in adaptation along environmental gradient

Zhou, Qiujie; Lascoux, Martin; Milesi, Pascal