Jens Carlsson

Virtual Fragment Screening for DNA Repair Inhibitors in Vast Chemical Space

Luttens, Andreas; Vo, Duc Duy; Scaletti, Emma; Wiita, Elisée et al.

Ingår i Nature Communications, 2025

• DOI för Virtual Fragment Screening for DNA Repair Inhibitors in Vast Chemical Space
• Ladda ner fulltext (pdf) av Virtual Fragment Screening for DNA Repair Inhibitors in Vast Chemical Space

Structure-based discovery of positive allosteric modulators of the A₁ adenosine receptor

Nguyen, Anh T. N.; Panel, Nicolas; Vo, Duc Duy; Thai, Bui San et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2025

• DOI för Structure-based discovery of positive allosteric modulators of the A₁ adenosine receptor
• Ladda ner fulltext (pdf) av Structure-based discovery of positive allosteric modulators of the A₁ adenosine receptor

AlphaFold accelerated discovery of psychotropic agonists targeting the trace amine-associated receptor 1

Díaz-Holguin, Alejandro; Saarinen, Marcus; Vo, Duc Duy; Sturchio, Andrea et al.

Ingår i Science Advances, 2024

• DOI för AlphaFold accelerated discovery of psychotropic agonists targeting the trace amine-associated receptor 1
• Ladda ner fulltext (pdf) av AlphaFold accelerated discovery of psychotropic agonists targeting the trace amine-associated receptor 1

Design of Drug Efficacy Guided by Free Energy Simulations of the β₂-Adrenoceptor

Panel, Nicolas; Vo, Duc Duy; Kahlous, Nour Aldin; Hübner, Harald et al.

Ingår i Angewandte Chemie International Edition, 2023

• DOI för Design of Drug Efficacy Guided by Free Energy Simulations of the β₂-Adrenoceptor
• Ladda ner fulltext (pdf) av Design of Drug Efficacy Guided by Free Energy Simulations of the β₂-Adrenoceptor

Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses

Luttens, Andreas; Gullberg, Hjalmar; Abdurakhmanov, Eldar; Vo, Duy Duc et al.

Ingår i Journal of the American Chemical Society, s. 2905-2920, 2022

• DOI för Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses
• Ladda ner fulltext (pdf) av Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses

A practical guide to large-scale docking

Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun et al.

Ingår i Nature Protocols, s. 4799-4832, 2021

• DOI för A practical guide to large-scale docking

Structure-Guided Design of G-Protein-Coupled Receptor Polypharmacology

Kampen, Stefanie; Vo, Duc Duy; Zhang, Xiaoqun; Panel, Nicolas et al.

Ingår i Angewandte Chemie International Edition, s. 18022-18030, 2021

• DOI för Structure-Guided Design of G-Protein-Coupled Receptor Polypharmacology
• Ladda ner fulltext (pdf) av Structure-Guided Design of G-Protein-Coupled Receptor Polypharmacology

Ligand design by targeting a binding site water

Matricon, Pierre; Suresh, R. Rama; Gao, Zhan-Guo; Panel, Nicolas et al.

Ingår i Chemical Science, s. 960-968, 2021

• DOI för Ligand design by targeting a binding site water

Positive allosteric mechanisms of adenosine A(1) receptor-mediated analgesia

Draper-Joyce, Christopher J.; Bhola, Rebecca; Wang, Jinan; Bhattarai, Apurba et al.

Ingår i Nature, s. 571-576, 2021

• DOI för Positive allosteric mechanisms of adenosine A(1) receptor-mediated analgesia

Structure-Based Virtual Screening for Ligands of G Protein-Coupled Receptors: What Can Molecular Docking Do for You?

Ballante, Flavio; Kooistra, Albert J.; Kampen, Stefanie; de Graaf, Chris et al.

Ingår i Pharmacological Reviews, s. 527-565, 2021

• DOI för Structure-Based Virtual Screening for Ligands of G Protein-Coupled Receptors: What Can Molecular Docking Do for You?
• Ladda ner fulltext (pdf) av Structure-Based Virtual Screening for Ligands of G Protein-Coupled Receptors: What Can Molecular Docking Do for You?

Improving AlphaFold2 Performance in Virtual Screens Targeting GPCRs by Enhancing Binding-Site Conformational Sampling

Mitjavila-Domenech, Nuria; Díaz, Alejandro; Hu, Huabin; Kahlous, Nour Aldin et al.

Ingår i Journal of Chemical Information and Modeling, s. 6045-6056, 2026

• DOI för Improving AlphaFold2 Performance in Virtual Screens Targeting GPCRs by Enhancing Binding-Site Conformational Sampling
• Ladda ner fulltext (pdf) av Improving AlphaFold2 Performance in Virtual Screens Targeting GPCRs by Enhancing Binding-Site Conformational Sampling

Molecular mechanisms of native ligand selectivity in catecholamine G protein-coupled receptors

Kahlous, Nour Aldin; Rinne, Maiju K.; Zhang, Xin; Li, Yanying et al.

Ingår i Nature Communications, 2026

• DOI för Molecular mechanisms of native ligand selectivity in catecholamine G protein-coupled receptors
• Ladda ner fulltext (pdf) av Molecular mechanisms of native ligand selectivity in catecholamine G protein-coupled receptors

Docking of virtual libraries identifies small-molecule agonists of neurotensin receptors with analgesic activity

Panel, Nicolas; Vo, Duy Duc; Hübner, Harald; Deluigi, Mattia et al.

Ingår i Nature Communications, 2026

• DOI för Docking of virtual libraries identifies small-molecule agonists of neurotensin receptors with analgesic activity
• Ladda ner fulltext (pdf) av Docking of virtual libraries identifies small-molecule agonists of neurotensin receptors with analgesic activity

Peptide ligand discovery of G protein-coupled receptors

Hermes, Julius; Matic, Marin; Yeung, Ho Yan; Jiang, Qianru et al.

Ingår i Nature Reviews Methods Primers, 2026

• DOI för Peptide ligand discovery of G protein-coupled receptors

Structural basis for uracil removal from DNA by human SMUG1

Ludascher, Julian M.; Hutchinson, Emma Scaletti; Vila-Julia, Guillem; Jemth, Ann-Sofie et al.

Ingår i Nature Communications, 2026

• DOI för Structural basis for uracil removal from DNA by human SMUG1
• Ladda ner fulltext (pdf) av Structural basis for uracil removal from DNA by human SMUG1

Improving AlphaFold2 Performance in Virtual Screens Targeting GPCRs by Enhancing Binding-Site Conformational Sampling

Mitjavila-Domenech, Nuria; Díaz, Alejandro; Hu, Huabin; Kahlous, Nour Aldin et al.

Ingår i Journal of Chemical Information and Modeling, s. 6045-6056, 2026

• DOI för Improving AlphaFold2 Performance in Virtual Screens Targeting GPCRs by Enhancing Binding-Site Conformational Sampling
• Ladda ner fulltext (pdf) av Improving AlphaFold2 Performance in Virtual Screens Targeting GPCRs by Enhancing Binding-Site Conformational Sampling

Molecular mechanisms of native ligand selectivity in catecholamine G protein-coupled receptors

Kahlous, Nour Aldin; Rinne, Maiju K.; Zhang, Xin; Li, Yanying et al.

Ingår i Nature Communications, 2026

• DOI för Molecular mechanisms of native ligand selectivity in catecholamine G protein-coupled receptors
• Ladda ner fulltext (pdf) av Molecular mechanisms of native ligand selectivity in catecholamine G protein-coupled receptors

Docking of virtual libraries identifies small-molecule agonists of neurotensin receptors with analgesic activity

Panel, Nicolas; Vo, Duy Duc; Hübner, Harald; Deluigi, Mattia et al.

Ingår i Nature Communications, 2026

• DOI för Docking of virtual libraries identifies small-molecule agonists of neurotensin receptors with analgesic activity
• Ladda ner fulltext (pdf) av Docking of virtual libraries identifies small-molecule agonists of neurotensin receptors with analgesic activity

Structural basis for uracil removal from DNA by human SMUG1

Ludascher, Julian M.; Hutchinson, Emma Scaletti; Vila-Julia, Guillem; Jemth, Ann-Sofie et al.

Ingår i Nature Communications, 2026

• DOI för Structural basis for uracil removal from DNA by human SMUG1
• Ladda ner fulltext (pdf) av Structural basis for uracil removal from DNA by human SMUG1

Computational design of constitutively active mutants of Dopamine D2 receptor inspired by ligand-independent activation mechanisms

Chen, Yue; Saarinen, Marcus; Naraine, Akshay; Carlsson, Jens et al.

Ingår i BMC Biology, 2026

• DOI för Computational design of constitutively active mutants of Dopamine D2 receptor inspired by ligand-independent activation mechanisms
• Ladda ner fulltext (pdf) av Computational design of constitutively active mutants of Dopamine D2 receptor inspired by ligand-independent activation mechanisms

Rapid Traversal of Ultralarge Chemical Space using Machine Learning Guided Docking Screens

Luttens, Andreas; Cabeza de Vaca, Israel; Sparring, Leonard; Brea, José et al.

Ingår i Nature Computational Science, s. 301-312, 2025

• DOI för Rapid Traversal of Ultralarge Chemical Space using Machine Learning Guided Docking Screens
• Ladda ner fulltext (pdf) av Rapid Traversal of Ultralarge Chemical Space using Machine Learning Guided Docking Screens

GRK-biased adrenergic agonists for the treatment of type 2 diabetes and obesity

Motso, Aikaterini; Pelcman, Benjamin; Kalinovich, Anastasia; Kahlous, Nour Aldin et al.

Ingår i Cell, 2025

• DOI för GRK-biased adrenergic agonists for the treatment of type 2 diabetes and obesity
• Ladda ner fulltext (pdf) av GRK-biased adrenergic agonists for the treatment of type 2 diabetes and obesity

Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139

Cabeza de Vaca, Israel; Trapkov, Boris; Shen, Ling; Vo, Duy Duc et al.

Ingår i Nature Communications, 2025

• DOI för Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139
• Ladda ner fulltext (pdf) av Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139

Identification of a Lipid-Exposed Extrahelical Binding Site for Positive Allosteric Modulators of the Dopamine D₂ Receptor

Lim, Herman D.; Bartuzi, Damian; Keen, Alastair C.; Rauffenbart, Caroline et al.

Ingår i ACS Chemical Neuroscience, s. 2295-2311, 2025

• DOI för Identification of a Lipid-Exposed Extrahelical Binding Site for Positive Allosteric Modulators of the Dopamine D₂ Receptor
• Ladda ner fulltext (pdf) av Identification of a Lipid-Exposed Extrahelical Binding Site for Positive Allosteric Modulators of the Dopamine D₂ Receptor

Virtual Fragment Screening for DNA Repair Inhibitors in Vast Chemical Space

Luttens, Andreas; Vo, Duc Duy; Scaletti, Emma; Wiita, Elisée et al.

Ingår i Nature Communications, 2025

• DOI för Virtual Fragment Screening for DNA Repair Inhibitors in Vast Chemical Space
• Ladda ner fulltext (pdf) av Virtual Fragment Screening for DNA Repair Inhibitors in Vast Chemical Space

Structure-based discovery of positive allosteric modulators of the A₁ adenosine receptor

Nguyen, Anh T. N.; Panel, Nicolas; Vo, Duc Duy; Thai, Bui San et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2025

• DOI för Structure-based discovery of positive allosteric modulators of the A₁ adenosine receptor
• Ladda ner fulltext (pdf) av Structure-based discovery of positive allosteric modulators of the A₁ adenosine receptor

Development of an In Situ G Protein-Coupled Receptor Fragment Molecule Screening Approach with High-Resolution Magic Angle Spinning Nuclear Magnetic Resonance

Petracco, Enzo; Ferre, Guillaume; Kabelka, Ivo; Ballante, Flavio et al.

Ingår i ACS Chemical Biology, s. 401-411, 2025

• DOI för Development of an In Situ G Protein-Coupled Receptor Fragment Molecule Screening Approach with High-Resolution Magic Angle Spinning Nuclear Magnetic Resonance

AlphaFold accelerated discovery of psychotropic agonists targeting the trace amine-associated receptor 1

Díaz-Holguin, Alejandro; Saarinen, Marcus; Vo, Duc Duy; Sturchio, Andrea et al.

Ingår i Science Advances, 2024

• DOI för AlphaFold accelerated discovery of psychotropic agonists targeting the trace amine-associated receptor 1
• Ladda ner fulltext (pdf) av AlphaFold accelerated discovery of psychotropic agonists targeting the trace amine-associated receptor 1

Structure-based virtual screening of vast chemical space as a starting point for drug discovery

Carlsson, Jens; Luttens, Andreas

Ingår i Current opinion in structural biology, 2024

• DOI för Structure-based virtual screening of vast chemical space as a starting point for drug discovery
• Ladda ner fulltext (pdf) av Structure-based virtual screening of vast chemical space as a starting point for drug discovery

2-Aryladenine Derivatives as a Potent Scaffold for Adenosine Receptor Antagonists: The 6-Morpholino Derivatives

Areias, Filipe; Correia, Carla; Rocha, Ashly; Teixeira, Sofia et al.

Ingår i Molecules, 2024

• DOI för 2-Aryladenine Derivatives as a Potent Scaffold for Adenosine Receptor Antagonists: The 6-Morpholino Derivatives
• Ladda ner fulltext (pdf) av 2-Aryladenine Derivatives as a Potent Scaffold for Adenosine Receptor Antagonists: The 6-Morpholino Derivatives

Design of Drug Efficacy Guided by Free Energy Simulations of the β₂-Adrenoceptor

Panel, Nicolas; Vo, Duc Duy; Kahlous, Nour Aldin; Hübner, Harald et al.

Ingår i Angewandte Chemie International Edition, 2023

• DOI för Design of Drug Efficacy Guided by Free Energy Simulations of the β₂-Adrenoceptor
• Ladda ner fulltext (pdf) av Design of Drug Efficacy Guided by Free Energy Simulations of the β₂-Adrenoceptor

Establishing mammalian GLUT kinetics and lipid composition influences in a reconstituted-liposome system

Suades, Albert; Qureshi, Aziz; McComas, Sarah E.; Coincon, Mathieu et al.

Ingår i Nature Communications, 2023

• DOI för Establishing mammalian GLUT kinetics and lipid composition influences in a reconstituted-liposome system
• Ladda ner fulltext (pdf) av Establishing mammalian GLUT kinetics and lipid composition influences in a reconstituted-liposome system

Structure-based virtual screening discovers potent and selective adenosine A1 receptor antagonists

Matricon, Pierre; Nguyen, Anh T. N.; Vo, Duc Duy; Baltos, Jo-Anne et al.

Ingår i European Journal of Medicinal Chemistry, 2023

• DOI för Structure-based virtual screening discovers potent and selective adenosine A1 receptor antagonists
• Ladda ner fulltext (pdf) av Structure-based virtual screening discovers potent and selective adenosine A1 receptor antagonists

Development and Characterization of Novel Selective, Non-Basic Dopamine D-2 Receptor Antagonists for the Treatment of Schizophrenia

Stepnicki, Piotr; Wosko, Sylwia; Bartyzel, Agata; Zieba, Agata et al.

Ingår i Molecules, 2023

• DOI för Development and Characterization of Novel Selective, Non-Basic Dopamine D-2 Receptor Antagonists for the Treatment of Schizophrenia
• Ladda ner fulltext (pdf) av Development and Characterization of Novel Selective, Non-Basic Dopamine D-2 Receptor Antagonists for the Treatment of Schizophrenia

Structure-Based Discovery of Negative Allosteric Modulators of the Metabotropic Glutamate Receptor 5

Kampen, Stefanie; Rodriguez, David; Jorgensen, Morten; Kruszyk-Kujawa, Monika et al.

Ingår i ACS Chemical Biology, s. 2744-2752, 2022

• DOI för Structure-Based Discovery of Negative Allosteric Modulators of the Metabotropic Glutamate Receptor 5
• Ladda ner fulltext (pdf) av Structure-Based Discovery of Negative Allosteric Modulators of the Metabotropic Glutamate Receptor 5

Importance of Binding Site Hydration and Flexibility Revealed When Optimizing a Macrocyclic Inhibitor of the Keap1-Nrf2 Protein-Protein Interaction

Begnini, Fabio; Geschwindner, Stefan; Johansson, Patrik; Wissler, Lisa et al.

Ingår i Journal of Medicinal Chemistry, s. 3473-3517, 2022

• DOI för Importance of Binding Site Hydration and Flexibility Revealed When Optimizing a Macrocyclic Inhibitor of the Keap1-Nrf2 Protein-Protein Interaction
• Ladda ner fulltext (pdf) av Importance of Binding Site Hydration and Flexibility Revealed When Optimizing a Macrocyclic Inhibitor of the Keap1-Nrf2 Protein-Protein Interaction

Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses

Luttens, Andreas; Gullberg, Hjalmar; Abdurakhmanov, Eldar; Vo, Duy Duc et al.

Ingår i Journal of the American Chemical Society, s. 2905-2920, 2022

• DOI för Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses
• Ladda ner fulltext (pdf) av Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses

The mGlu₅ Receptor Protomer-Mediated Dopamine D₂ Receptor Trans-Inhibition Is Dependent on the Adenosine A_2A Receptor Protomer: Implications for Parkinson's Disease

Romero-Fernandez, Wilber; Taura, Jaume J.; Crans, Rene A. J.; Lopez-Cano, Marc et al.

Ingår i Molecular Neurobiology, s. 5955-5969, 2022

• DOI för The mGlu₅ Receptor Protomer-Mediated Dopamine D₂ Receptor Trans-Inhibition Is Dependent on the Adenosine A_2A Receptor Protomer: Implications for Parkinson's Disease
• Ladda ner fulltext (pdf) av The mGlu₅ Receptor Protomer-Mediated Dopamine D₂ Receptor Trans-Inhibition Is Dependent on the Adenosine A_2A Receptor Protomer: Implications for Parkinson's Disease

Identification of ligand-specific G protein-coupled receptor states and prediction of downstream efficacy via data-driven modeling

Fleetwood, Oliver; Carlsson, Jens; Delemotte, Lucie

Ingår i eLIFE, 2021

• DOI för Identification of ligand-specific G protein-coupled receptor states and prediction of downstream efficacy via data-driven modeling
• Ladda ner fulltext (pdf) av Identification of ligand-specific G protein-coupled receptor states and prediction of downstream efficacy via data-driven modeling

A practical guide to large-scale docking

Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun et al.

Ingår i Nature Protocols, s. 4799-4832, 2021

• DOI för A practical guide to large-scale docking

Can molecular dynamics simulations improve the structural accuracy and virtual screening performance of GPCR models?

Kapla, Jon; Rodriguez Espigares, Ismael; Ballante, Flavio; Selent, Jana et al.

Ingår i PloS Computational Biology, 2021

• DOI för Can molecular dynamics simulations improve the structural accuracy and virtual screening performance of GPCR models?
• Ladda ner fulltext (pdf) av Can molecular dynamics simulations improve the structural accuracy and virtual screening performance of GPCR models?

Structure-Guided Design of G-Protein-Coupled Receptor Polypharmacology

Kampen, Stefanie; Vo, Duc Duy; Zhang, Xiaoqun; Panel, Nicolas et al.

Ingår i Angewandte Chemie International Edition, s. 18022-18030, 2021

• DOI för Structure-Guided Design of G-Protein-Coupled Receptor Polypharmacology
• Ladda ner fulltext (pdf) av Structure-Guided Design of G-Protein-Coupled Receptor Polypharmacology

Ligand design by targeting a binding site water

Matricon, Pierre; Suresh, R. Rama; Gao, Zhan-Guo; Panel, Nicolas et al.

Ingår i Chemical Science, s. 960-968, 2021

• DOI för Ligand design by targeting a binding site water

Fragment-based design of selective GPCR ligands guided by free energy simulations

Matricon, Pierre; Vo, Duc Duy; Gao, Zhan-Guo; Kihlberg, Jan et al.

Ingår i Chemical Communications, s. 12305-12308, 2021

• DOI för Fragment-based design of selective GPCR ligands guided by free energy simulations
• Ladda ner fulltext (pdf) av Fragment-based design of selective GPCR ligands guided by free energy simulations

Positive allosteric mechanisms of adenosine A(1) receptor-mediated analgesia

Draper-Joyce, Christopher J.; Bhola, Rebecca; Wang, Jinan; Bhattarai, Apurba et al.

Ingår i Nature, s. 571-576, 2021

• DOI för Positive allosteric mechanisms of adenosine A(1) receptor-mediated analgesia

Energy Landscapes Reveal Agonist Control of G Protein-Coupled Receptor Activation via Microswitches

Fleetwood, Oliver; Matricon, Pierre; Carlsson, Jens; Delemotte, Lucie

Ingår i Biochemistry, s. 880-891, 2020

• DOI för Energy Landscapes Reveal Agonist Control of G Protein-Coupled Receptor Activation via Microswitches
• Ladda ner fulltext (pdf) av Energy Landscapes Reveal Agonist Control of G Protein-Coupled Receptor Activation via Microswitches

Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity

Jaiteh, Mariama; Rodríguez-Espigares, Ismael; Selent, Jana; Carlsson, Jens

Ingår i PloS Computational Biology, 2020

• DOI för Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity
• Ladda ner fulltext (pdf) av Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity

The European Research Network on Signal Transduction (ERNEST): Toward a Multidimensional Holistic Understanding of G Protein-Coupled Receptor Signaling

Sommer, Martha E.; Selent, Jana; Carlsson, Jens; De Graaf, Chris et al.

Ingår i ACS Pharmacology & Translational Science, s. 361-370, 2020

• DOI för The European Research Network on Signal Transduction (ERNEST): Toward a Multidimensional Holistic Understanding of G Protein-Coupled Receptor Signaling
• Ladda ner fulltext (pdf) av The European Research Network on Signal Transduction (ERNEST): Toward a Multidimensional Holistic Understanding of G Protein-Coupled Receptor Signaling

Docking Finds GPCR Ligands in Dark Chemical Matter

Ballante, Flavio; Rudling, Axel; Zeifman, Alexey; Luttens, Andreas et al.

Ingår i Journal of Medicinal Chemistry, s. 613-620, 2020

• DOI för Docking Finds GPCR Ligands in Dark Chemical Matter

GPCRmd uncovers the dynamics of the 3D-GPCRome

Rodriguez-Espigares, Ismael; Torrens-Fontanals, Mariona; Tiemann, Johanna K. S.; Aranda-Garcia, David et al.

Ingår i Nature Methods, s. 777-787, 2020

• DOI för GPCRmd uncovers the dynamics of the 3D-GPCRome

A conserved molecular switch in Class F receptors regulates receptor activation and pathway selection

Wright, Shane C.; Kozielewicz, Pawel; Kowalski-Jahn, Maria; Petersen, Julian et al.

Ingår i Nature Communications, 2019

• DOI för A conserved molecular switch in Class F receptors regulates receptor activation and pathway selection
• Ladda ner fulltext (pdf) av A conserved molecular switch in Class F receptors regulates receptor activation and pathway selection

Structural Characterization of Agonist Binding to Protease-Activated Receptor 2 through Mutagenesis and Computational Modeling

Kennedy, Amanda; Ballante, Flavio; Johansson, Johan; Milligan, Graeme et al.

Ingår i ACS Pharmacology & Translational Science, s. 119-133, 2018

• DOI för Structural Characterization of Agonist Binding to Protease-Activated Receptor 2 through Mutagenesis and Computational Modeling
• Ladda ner fulltext (pdf) av Structural Characterization of Agonist Binding to Protease-Activated Receptor 2 through Mutagenesis and Computational Modeling

Structure-based screening for GPCR ligands from fragment and lead-like chemical space

Carlsson, Jens

Ingår i Abstracts of Papers of the American Chemical Society, 2018

Scavenging of superoxide by a membrane-bound superoxide oxidase

Lundgren, Camilla A. K.; Sjostrand, Dan; Biner, Olivier; Bennett, Matthew et al.

Ingår i Nature Chemical Biology, s. 788-793, 2018

• DOI för Scavenging of superoxide by a membrane-bound superoxide oxidase

Mapping the Interface of a GPCR Dimer: A Structural Model of the A(2A) Adenosine and D-2 Dopamine Receptor Heteromer

Borroto-Escuela, Dasiel O.; Rodriguez, David; Romero Fernandez, Wilber; Kapla, Jon et al.

Ingår i Frontiers in Pharmacology, 2018

• DOI för Mapping the Interface of a GPCR Dimer: A Structural Model of the A(2A) Adenosine and D-2 Dopamine Receptor Heteromer
• Ladda ner fulltext (pdf) av Mapping the Interface of a GPCR Dimer: A Structural Model of the A(2A) Adenosine and D-2 Dopamine Receptor Heteromer

Docking Screens for Dual Inhibitors of Disparate Drug Targets for Parkinson's Disease

Jaiteh, Mariama; Zeifman, Alexey; Saarinen, Marcus; Svenningsson, Per et al.

Ingår i Journal of Medicinal Chemistry, s. 5269-5278, 2018

• DOI för Docking Screens for Dual Inhibitors of Disparate Drug Targets for Parkinson's Disease

Structure-guided discovery of adenosine receptor ligands

Carlsson, Jens

Ingår i Purinergic Signalling Purinergic Signalling, 2018

• DOI för Structure-guided discovery of adenosine receptor ligands

FZD(5) is a G alpha(q)-coupled receptor that exhibits the functional hallmarks of prototypical GPCRs

Wright, Shane C.; Canizal, Maria Consuelo Alonso; Benkel, Tobias; Simon, Katharina et al.

Ingår i Science Signaling, 2018

• DOI för FZD(5) is a G alpha(q)-coupled receptor that exhibits the functional hallmarks of prototypical GPCRs

Disruption of A2AR-D2R Heteroreceptor Complexes After A2AR Transmembrane 5 Peptide Administration Enhances Cocaine Self-Administration in Rats

Borroto-Escuela, Dasiel O.; Wydra, Karolina; Li, Xiang; Rodriguez, David et al.

Ingår i Molecular Neurobiology, s. 7038-7048, 2018

• DOI för Disruption of A2AR-D2R Heteroreceptor Complexes After A2AR Transmembrane 5 Peptide Administration Enhances Cocaine Self-Administration in Rats
• Ladda ner fulltext (pdf) av Disruption of A2AR-D2R Heteroreceptor Complexes After A2AR Transmembrane 5 Peptide Administration Enhances Cocaine Self-Administration in Rats

Prediction of Ordered Water Molecules in Protein Binding Sites from Molecular Dynamics Simulations: The Impact of Ligand Binding on Hydration Networks

Rudling, Axel; Orro, Adolfo; Carlsson, Jens

Ingår i Journal of Chemical Information and Modeling, s. 350-361, 2018

• DOI för Prediction of Ordered Water Molecules in Protein Binding Sites from Molecular Dynamics Simulations: The Impact of Ligand Binding on Hydration Networks

Structure-Guided Screening for Functionally Selective D-2 Dopamine Receptor Ligands from a Virtual Chemical Library

Mannel, Barbara; Jaiteh, Mariama; Zeifman, Alexey; Randakova, Alena et al.

Ingår i ACS Chemical Biology, s. 2652-2661, 2017

• DOI för Structure-Guided Screening for Functionally Selective D-2 Dopamine Receptor Ligands from a Virtual Chemical Library

Ligand Discovery for a Peptide-Binding GPCR by Structure-Based Screening of Fragment- and Lead-Like Chemical Libraries

Ranganathan, Anirudh; Heine, Philipp; Rudling, Axel; Pluckthun, Andreas et al.

Ingår i ACS Chemical Biology, s. 735-745, 2017

• DOI för Ligand Discovery for a Peptide-Binding GPCR by Structure-Based Screening of Fragment- and Lead-Like Chemical Libraries

Agonist-induced dimer dissociation as a macromolecular step in G protein-coupled receptor signaling

Petersen, Julian; Wright, Shane C.; Rodriguez, David; Matricon, Pierre et al.

Ingår i Nature Communications, 2017

• DOI för Agonist-induced dimer dissociation as a macromolecular step in G protein-coupled receptor signaling
• Ladda ner fulltext (pdf) av Agonist-induced dimer dissociation as a macromolecular step in G protein-coupled receptor signaling

Fragment optimization for GPCRs by molecular dynamics free energy calculations: Probing druggable subpockets of the A(2A) adenosine receptor binding site

Matricon, Pierre; Ranganathan, Anirudh; Warnick, Eugene; Gao, Zhan-Guo et al.

Ingår i Scientific Reports, 2017

• DOI för Fragment optimization for GPCRs by molecular dynamics free energy calculations: Probing druggable subpockets of the A(2A) adenosine receptor binding site
• Ladda ner fulltext (pdf) av Fragment optimization for GPCRs by molecular dynamics free energy calculations: Probing druggable subpockets of the A(2A) adenosine receptor binding site

The tyrosine Y250(2.39) in Frizzled 4 defines a conserved motif important for structural integrity of the receptor and recruitment of Disheveled

Strakova, Katerina; Matricon, Pierre; Yokota, Chika; Arthofer, Elisa et al.

Ingår i Cellular Signalling, s. 85-96, 2017

• DOI för The tyrosine Y250(2.39) in Frizzled 4 defines a conserved motif important for structural integrity of the receptor and recruitment of Disheveled

Fragment-Based Discovery and Optimization of Enzyme Inhibitors by Docking of Commercial Chemical Space

Rudling, Axel; Gustafsson, Robert; Almlof, Ingrid; Homan, Evert et al.

Ingår i Journal of Medicinal Chemistry, s. 8160-8169, 2017

• DOI för Fragment-Based Discovery and Optimization of Enzyme Inhibitors by Docking of Commercial Chemical Space

Structure-Based Screening of Uncharted Chemical Space for Atypical Adenosine Receptor Agonists

Rodriguez, David; Chakraborty, Saibal; Warnick, Eugene; Crane, Steven et al.

Ingår i ACS Chemical Biology, s. 2763-2772, 2016

• DOI för Structure-Based Screening of Uncharted Chemical Space for Atypical Adenosine Receptor Agonists

Fragment-Based Discovery of Subtype-Selective Adenosine Receptor Ligands from Homology Models

Ranganathan, Anirudh; Stoddart, Leigh A.; Hill, Stephen J.; Carlsson, Jens

Ingår i Journal of Medicinal Chemistry, s. 9578-9590, 2015

• DOI för Fragment-Based Discovery of Subtype-Selective Adenosine Receptor Ligands from Homology Models

Discovery of trace amine-associated receptor 1 ligands by molecular docking screening against a homology model

Lam, V. M.; Rodriguez, D.; Zhang, T.; Koh, E. J. et al.

Ingår i MedChemComm, s. 2216-2223, 2015

• DOI för Discovery of trace amine-associated receptor 1 ligands by molecular docking screening against a homology model

Absolute hydration entropies of alkali metal ions from molecular dynamics simulations

Carlsson, Jens; Åqvist, Johan

Ingår i Journal of Physical Chemistry B, s. 10255-10260, 2009

• DOI för Absolute hydration entropies of alkali metal ions from molecular dynamics simulations

Charges for Large Scale Binding Free Energy Calculations with the Linear Interaction Energy Method

Wallin, Göran; Nervall, Martin; Carlsson, Jens; Åqvist, Johan

Ingår i Journal of Chemical Theory and Computation, s. 380-395, 2009

• DOI för Charges for Large Scale Binding Free Energy Calculations with the Linear Interaction Energy Method

Predicting Binding Modes from Free Energy Calculations

Nervall, Martin; Hanspers, Peter; Carlsson, Jens; Boukharta, Lars et al.

Ingår i Journal of Medicinal Chemistry, s. 2657-2667, 2008

• DOI för Predicting Binding Modes from Free Energy Calculations

Active site of epoxide hydrolases revisited: A noncanonical residue in potato StEH1 promotes both formation and breakdown of the alkylenzyme intermediate

Thomaeus, Ann; Carlsson, Jens; Åqvist, Johan; Widersten, Mikael

Ingår i Biochemistry, s. 2466-2479, 2007

• DOI för Active site of epoxide hydrolases revisited: A noncanonical residue in potato StEH1 promotes both formation and breakdown of the alkylenzyme intermediate

Structures of Mycobacterium tuberculosis 1-deoxy-D-xylulose-5-phosphate reductoisomerase provide new insights into catalysis

Henriksson, Lena M.; Unge, Torsten; Carlsson, Jens; Åqvist, Johan et al.

Ingår i Journal of Biological Chemistry, s. 19905-19916, 2007

• DOI för Structures of Mycobacterium tuberculosis 1-deoxy-D-xylulose-5-phosphate reductoisomerase provide new insights into catalysis

Improving the accuracy of the linear interaction energy method for solvation free energies

Almlöf, Martin; Carlsson, Jens; Åqvist, Johan

Ingår i Journal of Chemical Theory and Computation, s. 2162-2175, 2007

• DOI för Improving the accuracy of the linear interaction energy method for solvation free energies

Calculations of solute and solvent entropies from molecular dynamics simulations

Carlsson, Jens; Åqvist, Johan

Ingår i Physical Chemistry, Chemical Physics - PCCP, s. 5385-5395, 2006

• DOI för Calculations of solute and solvent entropies from molecular dynamics simulations

Peptide ligand discovery of G protein-coupled receptors

Hermes, Julius; Matic, Marin; Yeung, Ho Yan; Jiang, Qianru et al.

Ingår i Nature Reviews Methods Primers, 2026

• DOI för Peptide ligand discovery of G protein-coupled receptors

Adenosine A_2A receptor antagonists: from caffeine to selective non-xanthines

Jacobson, Kenneth A.; Gao, Zhan-Guo; Matricon, Pierre; Eddy, Matthew T. et al.

Ingår i British Journal of Pharmacology, s. 3496-3511, 2022

• DOI för Adenosine A_2A receptor antagonists: from caffeine to selective non-xanthines

Structure-Based Virtual Screening for Ligands of G Protein-Coupled Receptors: What Can Molecular Docking Do for You?

Ballante, Flavio; Kooistra, Albert J.; Kampen, Stefanie; de Graaf, Chris et al.

Ingår i Pharmacological Reviews, s. 527-565, 2021

• DOI för Structure-Based Virtual Screening for Ligands of G Protein-Coupled Receptors: What Can Molecular Docking Do for You?
• Ladda ner fulltext (pdf) av Structure-Based Virtual Screening for Ligands of G Protein-Coupled Receptors: What Can Molecular Docking Do for You?

Understanding the Role of GPCR Heteroreceptor Complexes in Modulating the Brain Networks in Health and Disease

Borroto-Escuela, Dasiel O.; Carlsson, Jens; Ambrogini, Patricia; Narvaez, Manuel et al.

Ingår i Frontiers in Cellular Neuroscience, 2017

• DOI för Understanding the Role of GPCR Heteroreceptor Complexes in Modulating the Brain Networks in Health and Disease
• Ladda ner fulltext (pdf) av Understanding the Role of GPCR Heteroreceptor Complexes in Modulating the Brain Networks in Health and Disease

Challenges in Computational Biochemistry: Solvation and Ligand Binding

Carlsson, Jens

2008

• Ladda ner fulltext (pdf) av Challenges in Computational Biochemistry: Solvation and Ligand Binding