Filip Malmberg
Universitetslektor vid Institutionen för informationsteknologi; Vi3; Bildanalys
- Telefon:
- 018-471 53 08
- E-post:
- filip.malmberg@it.uu.se
- Besöksadress:
- Hus 10, Regementsvägen 10
- Postadress:
- Box 337
751 05 UPPSALA
- Akademiska meriter:
- Docent
Kort presentation
Filip Malmberg är forskare i datoriserad bildanalys, verksam vid Institutionen för Informationsteknologi.

Publikationer
Senaste publikationer
On the Properties of a Class of Greedy Algorithms for Multicriteria Optimization
Ingår i Discrete Geometry and Mathematical Morphology, s. 291-302, 2025
Impact of genetic variants linked to liver fat and liver volume on MRI-mapped body composition
Ingår i JHEP Reports, 2025
- DOI för Impact of genetic variants linked to liver fat and liver volume on MRI-mapped body composition
- Ladda ner fulltext (pdf) av Impact of genetic variants linked to liver fat and liver volume on MRI-mapped body composition
Leveraging point annotations in segmentation learning with boundary loss
Ingår i Accepted for publication in Proceedings of International Conference on Pattern Recognition ICPR 2024, 2024, 2024
Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
Ingår i Cytometry Part A, 2024
- DOI för Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
- Ladda ner fulltext (pdf) av Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
A whole-body diffusion MRI normal atlas: development, evaluation and initial use
Ingår i Cancer Imaging, 2023
- DOI för A whole-body diffusion MRI normal atlas: development, evaluation and initial use
- Ladda ner fulltext (pdf) av A whole-body diffusion MRI normal atlas: development, evaluation and initial use
Alla publikationer
Artiklar i tidskrift
Impact of genetic variants linked to liver fat and liver volume on MRI-mapped body composition
Ingår i JHEP Reports, 2025
- DOI för Impact of genetic variants linked to liver fat and liver volume on MRI-mapped body composition
- Ladda ner fulltext (pdf) av Impact of genetic variants linked to liver fat and liver volume on MRI-mapped body composition
Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
Ingår i Cytometry Part A, 2024
- DOI för Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
- Ladda ner fulltext (pdf) av Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
A whole-body diffusion MRI normal atlas: development, evaluation and initial use
Ingår i Cancer Imaging, 2023
- DOI för A whole-body diffusion MRI normal atlas: development, evaluation and initial use
- Ladda ner fulltext (pdf) av A whole-body diffusion MRI normal atlas: development, evaluation and initial use
Ingår i Journal of Hepatology, 2022
Guest Editorial: Discrete Geometry and Mathematical Morphology
Ingår i Journal of Mathematical Imaging and Vision, s. 691-692, 2022
Ingår i Fluids and Barriers of the CNS, 2022
- DOI för White matter changes should not exclude patients with idiopathic normal pressure hydrocephalus from shunt surgery
- Ladda ner fulltext (pdf) av White matter changes should not exclude patients with idiopathic normal pressure hydrocephalus from shunt surgery
Ingår i Scientific Reports, 2022
- DOI för Improved geometric accuracy of whole body diffusion-weighted imaging at 1.5T and 3T using reverse polarity gradients
- Ladda ner fulltext (pdf) av Improved geometric accuracy of whole body diffusion-weighted imaging at 1.5T and 3T using reverse polarity gradients
Faster dense deformable image registration by utilizing both CPU and GPU
Ingår i Journal of Medical Imaging, 2021
- DOI för Faster dense deformable image registration by utilizing both CPU and GPU
- Ladda ner fulltext (pdf) av Faster dense deformable image registration by utilizing both CPU and GPU
Fast graph-cut based optimization for practical dense deformable registration of volume images
Ingår i Computerized Medical Imaging and Graphics, 2020
Multiple comparison correction methods for whole-body magnetic resonance imaging
Ingår i Journal of Medical Imaging, 2020
- DOI för Multiple comparison correction methods for whole-body magnetic resonance imaging
- Ladda ner fulltext (pdf) av Multiple comparison correction methods for whole-body magnetic resonance imaging
Ingår i Scientific Reports, 2020
- DOI för Validation of automated whole-body analysis of metabolic and morphological parameters from an integrated FDG-PET/MRI acquisition
- Ladda ner fulltext (pdf) av Validation of automated whole-body analysis of metabolic and morphological parameters from an integrated FDG-PET/MRI acquisition
Two Polynomial Time Graph Labeling Algorithms Optimizing Max-Norm-Based Objective Functions
Ingår i Journal of Mathematical Imaging and Vision, s. 737-750, 2020
RayCaching: Amortized Isosurface Rendering for Virtual Reality
Ingår i Computer graphics forum (Print), s. 220-230, 2020
- DOI för RayCaching: Amortized Isosurface Rendering for Virtual Reality
- Ladda ner fulltext (pdf) av RayCaching: Amortized Isosurface Rendering for Virtual Reality
Average volume reference space for large scale registration of whole-body magnetic resonance images
Ingår i PLOS ONE, 2019
- DOI för Average volume reference space for large scale registration of whole-body magnetic resonance images
- Ladda ner fulltext (pdf) av Average volume reference space for large scale registration of whole-body magnetic resonance images
Ingår i Acta Ophthalmologica, s. 208-213, 2019
A whole-body FDG PET/MR atlas for multiparametric voxel-based analysis
Ingår i Scientific Reports, 2019
- DOI för A whole-body FDG PET/MR atlas for multiparametric voxel-based analysis
- Ladda ner fulltext (pdf) av A whole-body FDG PET/MR atlas for multiparametric voxel-based analysis
PDNet: Semantic segmentation integrated with a primal-dual network for document binarization
Ingår i Pattern Recognition Letters, s. 52-60, 2019
- DOI för PDNet: Semantic segmentation integrated with a primal-dual network for document binarization
- Ladda ner fulltext (pdf) av PDNet: Semantic segmentation integrated with a primal-dual network for document binarization
Ingår i European Journal of Nuclear Medicine and Molecular Imaging, 2018
Using anti-aliased signed distance fields for generating surgical guides and plates from CT images
Ingår i Journal of WSCG, s. 11-20, 2017
Exact Evaluation of Targeted Stochastic Watershed Cuts
Ingår i Discrete Applied Mathematics, s. 449-460, 2017
A concept for holistic whole body MRI data analysis, Imiomics
Ingår i PLOS ONE, 2017
- DOI för A concept for holistic whole body MRI data analysis, Imiomics
- Ladda ner fulltext (pdf) av A concept for holistic whole body MRI data analysis, Imiomics
SmartPaint: a tool for interactive segmentation of medical volume images
Ingår i Computer Methods In Biomechanics And Biomedical Engeineering-Imaging And Visualization, s. 36-44, 2017
Ingår i Annals of Oncology, 2017
Ingår i Skeletal Radiology, s. 763-769, 2016
Ingår i Investigative Ophthalmology and Visual Science, 2016
BoneSplit - A 3D Texture Painting Tool for Interactive Bone Separation in CT Images
Ingår i Journal of WSCG, s. 157-166, 2015
Ingår i Psychiatry Research, s. 227-235, 2015
Efficient algorithm for finding the exact minimum barrier distance
Ingår i Computer Vision and Image Understanding, s. 53-64, 2014
Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge
Ingår i Medical Image Analysis, s. 359-373, 2014
Canine body composition quantification using 3 tesla fat–water MRI
Ingår i Journal of Magnetic Resonance Imaging, s. 485-491, 2014
An efficient algorithm for exact evaluation of stochastic watersheds
Ingår i Pattern Recognition Letters, s. 80-84, 2014
Ingår i Obesity, 2013
Ingår i NeuroImage, s. 355-360, 2013
Shape and volume of craniofacial cavities in intentional skull deformations
Ingår i American Journal of Physical Anthropology, s. 110-119, 2013
Ingår i Computer Vision and Image Understanding, s. 429-437, 2013
Bisphenol A exposure increases liver fat in juvenile fructose-fed Fischer 344 rats
Ingår i Toxicology, s. 125-132, 2013
A Graph-based Framework for Sub-pixel Image Segmentation
Ingår i Theoretical Computer Science, s. 1338-1349, 2011
Ingår i Nuclear Instruments and Methods in Physics Research Section A, s. 143-148, 2011
Läkarens känsel hjälper datorn
Ingår i Forskning & Framsteg, s. 62, 2009
Ingår i International Journal of Adhesion and Adhesives, s. 551-557, 2009
Böcker
Doktorsavhandlingar, sammanläggning
Kapitel i böcker, delar av antologi
Virtual Cranio-Maxillofacial Surgery Planning with Stereo Graphics and Haptics
Ingår i Computer-Assisted Musculoskeletal Surgery, s. 29-42, Springer, 2016
Konferensbidrag
On the Properties of a Class of Greedy Algorithms for Multicriteria Optimization
Ingår i Discrete Geometry and Mathematical Morphology, s. 291-302, 2025
Leveraging point annotations in segmentation learning with boundary loss
Ingår i Accepted for publication in Proceedings of International Conference on Pattern Recognition ICPR 2024, 2024, 2024
A Practical Algorithm for Max-Norm OptimalBinary Labeling of Graphs
Ingår i Graph-Based Representations in Pattern Recognition, 2023
Cell Segmentation of in situ Transcriptomics Data using Signed Graph Partitioning
Ingår i Graph-Based Representations in Pattern Recognition, s. 139-148, 2023
Recent Advances in Large Scale Whole Body MRI Image Analysis: Imiomics
Ingår i Proceedings of The 5th International Conference on Sustainable Information Engineering and Technology (SIET 2020), Malang, Indonesia, s. 10-15, 2020
Optimization of max-norm objective functions in image processing and computer vision
Ingår i Discrete Geometry for Computer Imagery, s. 206-218, 2019
SoftCut: A Virtual Planning Tool for Soft Tissue Resection on CT Images
Ingår i Medical Image Understanding and Analysis, s. 299-310, 2018
When Can lp-norm Objective Functions Be Minimized via Graph Cuts?
Ingår i Combinatorial Image Analysis, s. 112-117, 2018
Ingår i Ophthalmic Technologies XXVII, 2017
BoneSplit – A 3D painting tool for interactive bone segmentation in CT images
Ingår i Pattern Recognition and Information Processing, s. 3-13, 2017
The Boolean Map Distance: Theory and Efficient Computation
Ingår i International Conference on Discrete Geometry for Computer Imagery, s. 335-346, 2017
The Minimum Barrier Distance: A Summary of Recent Advances
Ingår i Discrete Geometry for Computer Imagery. DGCI 2017, s. 57-68, 2017
- DOI för The Minimum Barrier Distance: A Summary of Recent Advances
- Ladda ner fulltext (pdf) av The Minimum Barrier Distance: A Summary of Recent Advances
Ingår i Ophthalmic Technologies XXVI, 2016
Ingår i Ophthalmic Technologies XXVI, 2016
Signed Distance Fields for Modeling Surgical Guides and Plates from CT Images
Ingår i Proc, Swedish Symposium on Image Analysis, 2016
A Toolbox for Non-parametric Deformable Registration of Volume Images
2016
Holistic whole-body MRI image analysis
Ingår i Symposium of the Swedish Society for Automated Image Analysis, Uppsala, Sweden, (SSBA), 2016
Interactive Deformation of Volume Images for Image Registration
Ingår i Proc. Interactive Medical Image Computing Workshop, 2015
Fast evaluation of the robust stochastic watershed
Ingår i Mathematical Morphology and Its Applications to Signal and Image Processing, s. 705-716, 2015
An interactive tool for deformable registration of volume images
Ingår i Symposium of the Swedish Society for Automated Image Analysis (SSBA), 2014
Exact evaluation of stochastic watersheds: From trees to general graphs
Ingår i Discrete Geometry for Computer Imagery, s. 309-319, 2014
The Minimum Barrier Distance - Stability to seed point position
Ingår i Discrete Geometry for Computer Imagery, DGCI 2014, s. 111-121, 2014
Precise 3D Angle Measurements in CT Wrist Images
Ingår i Image Analysis and Processing – ICIAP 2013, s. 479-488, 2013
Faster Fuzzy Connectedness via Precomputation
Ingår i Mathematical Morphology and Its Applications to Signal and Image Processing, s. 476-483, 2013
Smart Paint: A New Interactive Segmentation Method\\ Applied to MR Prostate Segmentation
Ingår i Prostate MR Image Segmentation Grand Challenge (PROMISE'12), a MICCAI 2012 workshop, 2012
Towards User-Guided Quantitative Evaluation of Wrist Fractures in CT Images
Ingår i Computer Vision and Graphics, s. 204-211, 2012
Seeded Segmentation Based on Object Homogeneity
Ingår i Proceedings of the 21st International Conference on Pattern Recognition (ICPR), s. 21-24, 2012
Ingår i Visual Informatics: Sustaining Research and Innovations, s. 1-12, 2011
Image Foresting Transform: On-the-fly Computation of Segmentation Boundaries
Ingår i Image Analysis: 17th Scandinavian Conference, SCIA 2011, 2011
Generalized Hard Constraints for Graph Segmentation
Ingår i Image Analysis, 17th Scandinavian Conference. SCIA 2011., 2011
Relaxed Image Foresting Transforms for Interactive Volume Image Segmentation
Ingår i MEDICAL IMAGING 2010, 2010
Segmentation and Visualization of 3D Medical Images through Haptic Rendering
Ingår i Proceedings of the 10th International Conference on Pattern Recognition and Information Processing (PRIP 2009), s. 43-48, 2009
Interactive Segmentation with Relaxed Image Foresting Transforms
Ingår i Proceedings of SSBA 2009, 2009
Sub-pixel Segmentation with the Image Foresting Transform
Ingår i Proceedings of International Workshop on Combinatorial Image Analysis, s. 201-211, 2009
Binarization of Phase Contrast Volume Images of Fibrous Materials: A Case Study
Ingår i Proceedings of International Conference on Computer Vision Theory and Applications (VISAPP 2009), s. 148-153, 2009
An Automated Image Analysis Method for Measuring Fibre Contact in Fibrous and Composite Materials
Ingår i 13th European Conference on Composite Materials (ECCM), 2008
Graph Cut Based Segmentation of Phase Contrast Volume Images of Fibrous Materials
Ingår i Proceedings of Swedish Symposium on Image Analysis (SSBA'08), s. 131-134, 2008
Minimal Cost-Path for Path-Based Distances
Ingår i Proceedings of 5th International Symposium on Image and Signal Processing and Analysis (ISPA 2007), s. 379-384, 2007
A 3D live-wire segmentation method for volume images using haptic interaction
Ingår i DISCRETE GEOMETRY FOR COMPUTER IMAGERY, PROCEEDINGS 4245, s. 663-673, 2006
Ingår i Progress in Paper Physics Seminar, Oxford, Ohio, 2006, 2006
Ingår i 2006 Progress in Paper Physics, 2006
Ingår i 2006 Progress in Paper Physics, 2006
Licentiatavhandlingar, sammanläggning
Manuskript (preprint)
CalligraphyNet: Augmenting handwriting generation with quill based stroke width
2019
A toolkit for interactive medical image visualization and segmentation with haptics
2008
Faster dense deformable image registration by utilizing both CPU and GPU
Vectorised High-Fidelity Haptic Rendering with Dynamic Pointshell
Deformable Image Registration of Volumetric Whole-body MRI: An Evaluation
Rapid and Precise Orbit Segmentation through Interactive 3D Painting
Samlingsverk (redaktörskap)
Springer, 2021