Mattias Jakobsson

HLA diversity and signatures of selection in the Maniq, a nomadic hunter-gatherer population in Southern Thailand

Schaschl, Helmut; Herzog, Tobias; Oberreiter, Victoria; Kutanan, Wibhu et al.

Ingår i Immunogenetics, 2025

• DOI för HLA diversity and signatures of selection in the Maniq, a nomadic hunter-gatherer population in Southern Thailand
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Ancient DNA HLA typing reveals significant shifts in frequency in Europe since the Neolithic

Plascencia, Alan Godinez; Jakobsson, Mattias; Sanchez-Quinto, Federico

Ingår i Scientific Reports, 2025

• DOI för Ancient DNA HLA typing reveals significant shifts in frequency in Europe since the Neolithic
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Analysis of the abundance of radiocarbon samples as count data

de Navascues, Miguel; Burgarella, Concetta; Jakobsson, Mattias

Ingår i Peer Community Journal, 2025

• DOI för Analysis of the abundance of radiocarbon samples as count data
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Repeated plague infections across six generations of Neolithic Farmers

Seersholm, Frederik Valeur; Sjögren, Karl-Göran; Koelman, Julia; Blank, Malou et al.

Ingår i Nature, s. 114-121, 2024

• DOI för Repeated plague infections across six generations of Neolithic Farmers
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Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France

Simões, Luciana G.; Peyroteo Stjerna, Rita; Marchand, Grégor; Bernhardsson, Carolina et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2024

• DOI för Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France
• Ladda ner fulltext (pdf) av Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France

HLA diversity and signatures of selection in the Maniq, a nomadic hunter-gatherer population in Southern Thailand

Schaschl, Helmut; Herzog, Tobias; Oberreiter, Victoria; Kutanan, Wibhu et al.

Ingår i Immunogenetics, 2025

• DOI för HLA diversity and signatures of selection in the Maniq, a nomadic hunter-gatherer population in Southern Thailand
• Ladda ner fulltext (pdf) av HLA diversity and signatures of selection in the Maniq, a nomadic hunter-gatherer population in Southern Thailand

Ancient DNA HLA typing reveals significant shifts in frequency in Europe since the Neolithic

Plascencia, Alan Godinez; Jakobsson, Mattias; Sanchez-Quinto, Federico

Ingår i Scientific Reports, 2025

• DOI för Ancient DNA HLA typing reveals significant shifts in frequency in Europe since the Neolithic
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Analysis of the abundance of radiocarbon samples as count data

de Navascues, Miguel; Burgarella, Concetta; Jakobsson, Mattias

Ingår i Peer Community Journal, 2025

• DOI för Analysis of the abundance of radiocarbon samples as count data
• Ladda ner fulltext (pdf) av Analysis of the abundance of radiocarbon samples as count data

Repeated plague infections across six generations of Neolithic Farmers

Seersholm, Frederik Valeur; Sjögren, Karl-Göran; Koelman, Julia; Blank, Malou et al.

Ingår i Nature, s. 114-121, 2024

• DOI för Repeated plague infections across six generations of Neolithic Farmers
• Ladda ner fulltext (pdf) av Repeated plague infections across six generations of Neolithic Farmers

Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France

Simões, Luciana G.; Peyroteo Stjerna, Rita; Marchand, Grégor; Bernhardsson, Carolina et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2024

• DOI för Genomic ancestry and social dynamics of the last hunter-gatherers of Atlantic France
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Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals

Kirdök, Emrah; Kashuba, Natalija; Damlien, Hege; Manninen, Mikael A. et al.

Ingår i Scientific Reports, 2024

• DOI för Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals
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Human genetic structure in Northwest France provides new insights into West European historical demography

Alves, Isabel; Giemza, Joanna; Blum, Michael G. B.; Bernhardsson, Carolina et al.

Ingår i Nature Communications, 2024

• DOI för Human genetic structure in Northwest France provides new insights into West European historical demography
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BaTwa populations from Zambia retain ancestry of past hunter-gatherer groups

Breton, Gwenna; Barham, Lawrence; Mudenda, George; Soodyall, Himla et al.

Ingår i Nature Communications, 2024

• DOI för BaTwa populations from Zambia retain ancestry of past hunter-gatherer groups
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Identification of microbial pathogens in Neolithic Scandinavian humans

Bergfeldt, Nora; Kirdök, Emrah; Oskolkov, Nikolay; Mirabello, Claudio et al.

Ingår i Scientific Reports, 2024

• DOI för Identification of microbial pathogens in Neolithic Scandinavian humans
• Ladda ner fulltext (pdf) av Identification of microbial pathogens in Neolithic Scandinavian humans

Patrilocality and hunter-gatherer-related ancestry of populations in East-Central Europe during the Middle Bronze Age

Chylenski, Maciej; Makarowicz, Przemyslaw; Juras, Anna; Krzewinska, Maja et al.

Ingår i Nature Communications, 2023

• DOI för Patrilocality and hunter-gatherer-related ancestry of populations in East-Central Europe during the Middle Bronze Age
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Genetic continuity, isolation, and gene flow in Stone Age Central and Eastern Europe

Mattila, Tiina M.; Svensson, Emma M.; Juras, Anna; Günther, Torsten et al.

Ingår i Communications Biology, 2023

• DOI för Genetic continuity, isolation, and gene flow in Stone Age Central and Eastern Europe
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Northwest African Neolithic initiated by migrants from Iberia and Levant

Simões, Luciana G.; Günther, Torsten; Martínez-Sánchez, Rafael M.; Vera-Rodríguez, Juan Carlos et al.

Ingår i Nature, s. 550-556, 2023

• DOI för Northwest African Neolithic initiated by migrants from Iberia and Levant
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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago

Rifkin, Riaan F. F.; Vikram, Surendra; Alcorta, Jaime; Ramond, Jean-Baptiste et al.

Ingår i Communications Biology, 2023

• DOI för Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago
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The genetic history of Scandinavia from the Roman Iron Age to the present

Rodríguez-Varela, Ricardo; Moore, Kristjan H.S.; Ebenesersdóttir, S. Sunna; Kilinc, Gulsah Merve et al.

Ingår i Cell, s. 32-460000000000000000000, 2023

• DOI för The genetic history of Scandinavia from the Roman Iron Age to the present
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Detecting population continuity and ghost admixture among ancient genomes

McKenna, James; Bernhardsson, Carolina; Waxman, David; Jakobsson, Mattias et al.

Ingår i biorxiv, 2022

An empirical evaluation of genotype imputation of ancient DNA

Ausmees, Kristiina; Sanchez-Quinto, Federico; Jakobsson, Mattias; Nettelblad, Carl

Ingår i G3, 2022

• DOI för An empirical evaluation of genotype imputation of ancient DNA
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Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages

Karmin, Monika; Flores, Rodrigo; Saag, Lauri; Hudjashov, Georgi et al.

Ingår i Molecular biology and evolution, 2022

• DOI för Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages
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Multidisciplinary investigation reveals an individual of West African origin buried in a Portuguese Mesolithic shell midden four centuries ago

Peyroteo-Stjerna, Rita; Simões, Luciana G.; Fernandes, Ricardo; Lopes, Gonçalo et al.

Ingår i Journal of Archaeological Science, 2022

• DOI för Multidisciplinary investigation reveals an individual of West African origin buried in a Portuguese Mesolithic shell midden four centuries ago
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Bioarchaeological evidence of one of the earliest Islamic burials in the Levant

Srigyan, Megha; Bolivar, Hector; Urena, Irene; Santana, Jonathan et al.

Ingår i Communications Biology, 2022

• DOI för Bioarchaeological evidence of one of the earliest Islamic burials in the Levant
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Human origins in Southern African palaeo-wetlands?: Strong claims from weak evidence

Schlebusch, Carina; Loog, Liisa; Groucutt, Huw S.; King, Turi et al.

Ingår i Journal of Archaeological Science, 2021

• DOI för Human origins in Southern African palaeo-wetlands?: Strong claims from weak evidence

Maternal genetic origin of the late and final Neolithic human populations from present-day Poland

Juras, Anna; Ehler, Edvard; Chylenski, Maciej; Pospieszny, Lukasz et al.

Ingår i American Journal of Physical Anthropology, s. 223-236, 2021

• DOI för Maternal genetic origin of the late and final Neolithic human populations from present-day Poland

Evolution of cytokine production capacity in ancient and modern European populations

Domínguez-Andrés, Jorge; Kuijpers, Yunus; Bakker, Olivier B.; Jaeger, Martin et al.

Ingår i eLIFE, 2021

• DOI för Evolution of cytokine production capacity in ancient and modern European populations
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Comparison of sequencing data processing pipelines and application to underrepresented African human populations

Breton, Gwenna; Johansson, Anna C. V.; Sjödin, Per; Schlebusch, Carina et al.

Ingår i BMC Bioinformatics, 2021

• DOI för Comparison of sequencing data processing pipelines and application to underrepresented African human populations
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The Genetic Variation of Lactase Persistence Alleles in Sudan and South Sudan

Hollfelder, Nina; Babiker, Hiba; Granehäll, Lena; Schlebusch, Carina M. et al.

Ingår i Genome Biology and Evolution, 2021

• DOI för The Genetic Variation of Lactase Persistence Alleles in Sudan and South Sudan
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Estimating divergence times from DNA sequences

Sjödin, Per; McKenna, James; Jakobsson, Mattias

Ingår i Genetics, 2021

• DOI för Estimating divergence times from DNA sequences
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Later Stone Age human hair from Vaalkrans Shelter, Cape Floristic Region of South Africa, reveals genetic affinity to Khoe groups

Coutinho, Alexandra; Malmström, Helena; Edlund, Hanna; Henshilwood, Christopher et al.

Ingår i American Journal of Physical Anthropology, s. 701-713, 2021

• DOI för Later Stone Age human hair from Vaalkrans Shelter, Cape Floristic Region of South Africa, reveals genetic affinity to Khoe groups
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Genome of Peştera Muierii skull shows high diversity and low mutational load in pre-glacial Europe

Svensson, Emma; Günther, Torsten; Hoischen, Alexander; Hervella, Montserrat et al.

Ingår i Current Biology, s. 2973-U21, 2021

• DOI för Genome of Peştera Muierii skull shows high diversity and low mutational load in pre-glacial Europe
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Mobility patterns in inland southwestern Sweden during the Neolithic and Early Bronze Age

Blank, Malou; Sjögren, Karl-Göran; Knipper, Corina; Frei, Karin M. et al.

Ingår i Archaeological and Anthropological Sciences, 2021

• DOI för Mobility patterns in inland southwestern Sweden during the Neolithic and Early Bronze Age
• Ladda ner fulltext (pdf) av Mobility patterns in inland southwestern Sweden during the Neolithic and Early Bronze Age

Human population dynamics and Yersinia pestis in ancient northeast Asia

Kilinc, Gulsah Merve; Kashuba, Natalija; Koptekin, Dilek; Bergfeldt, Nora et al.

Ingår i Science Advances, 2021

• DOI för Human population dynamics and Yersinia pestis in ancient northeast Asia
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Taste perception and lifestyle: insights from phenotype and genome data among Africans and Asians

Sjöstrand, Agnès E.; Sjödin, Per; Hegay, Tatyana; Nikolaeva, Anna et al.

Ingår i European Journal of Human Genetics, s. 325-337, 2021

• DOI för Taste perception and lifestyle: insights from phenotype and genome data among Africans and Asians

Multiple migrations to the Philippines during the last 50,000 years

Larena, Maximilian; Sanchez-Quinto, Federico; Sjödin, Per; McKenna, James et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2021

• DOI för Multiple migrations to the Philippines during the last 50,000 years
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Philippine Ayta possess the highest level of Denisovan ancestry in the world

Larena, Maximilian; McKenna, James; Sanchez-Quinto, Federico; Bernhardsson, Carolina et al.

Ingår i Current Biology, s. 4219-4230, 2021

• DOI för Philippine Ayta possess the highest level of Denisovan ancestry in the world
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Variable kinship patterns in Neolithic Anatolia revealed by ancient genomes

Yaka, Reyhan; Mapelli, Igor; Kaptan, Damla; Dogu, Ayca et al.

Ingår i Current Biology, s. 2455-2.468e+21, 2021

• DOI för Variable kinship patterns in Neolithic Anatolia revealed by ancient genomes
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Genomic insights into population history and biological adaptation in Oceania

Choin, Jeremy; Mendoza-Revilla, Javier; Arauna, Lara R.; Cuadros-Espinoza, Sebastian et al.

Ingår i Nature, s. 583-589, 2021

• DOI för Genomic insights into population history and biological adaptation in Oceania

Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens

Schlebusch, Carina; Sjödin, Per; Breton, Gwenna; Günther, Torsten et al.

Ingår i Molecular biology and evolution, s. 2944-2954, 2020

• DOI för Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens
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Patterns of African and Asian admixture in the Afrikaner population of South Africa

Hollfelder, Nina; Erasmus, Johannes Christoff; Hammarén, Rickard; Vicente, Mário et al.

Ingår i BMC Biology, 2020

• DOI för Patterns of African and Asian admixture in the Afrikaner population of South Africa
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Illuminating Genetic Mysteries of the Dead Sea Scrolls

Anava, Sarit; Neuhof, Moran; Gingold, Hila; Sagy, Or et al.

Ingår i Cell, s. 1218-+, 2020

• DOI för Illuminating Genetic Mysteries of the Dead Sea Scrolls

Robust genome-wide ancestry inference for heterogeneous datasets: illustrated using the 1,000 genome project with 3D facial images

Li, Jiarui; Zarzar, Tomas Gonzalez; White, Julie D.; Indencleef, Karlijne et al.

Ingår i Scientific Reports, 2020

• DOI för Robust genome-wide ancestry inference for heterogeneous datasets: illustrated using the 1,000 genome project with 3D facial images
• Ladda ner fulltext (pdf) av Robust genome-wide ancestry inference for heterogeneous datasets: illustrated using the 1,000 genome project with 3D facial images

Mitochondrial genomes from Bronze Age Poland reveal genetic continuity from the Late Neolithic and additional genetic affinities with the steppe populations

Juras, Anna; Makarowicz, Przemyslaw; Chylenski, Maciej; Ehler, Edvard et al.

Ingår i American Journal of Physical Anthropology, s. 176-188, 2020

• DOI för Mitochondrial genomes from Bronze Age Poland reveal genetic continuity from the Late Neolithic and additional genetic affinities with the steppe populations

Y-Chromosome Variation in Southern African Khoe-San Populations Based on Whole-Genome Sequences

Naidoo, Thijessen; Xu, Jingzi; Vicente, Mário; Malmström, Helena et al.

Ingår i Genome Biology and Evolution, s. 1031-1039, 2020

• DOI för Y-Chromosome Variation in Southern African Khoe-San Populations Based on Whole-Genome Sequences
• Ladda ner fulltext (pdf) av Y-Chromosome Variation in Southern African Khoe-San Populations Based on Whole-Genome Sequences

The Neolithic Pitted Ware culture foragers were culturally but not genetically influenced by the Battle Axe culture herders

Coutinho, Alexandra; Günther, Torsten; Munters, Arielle R.; Svensson, Emma M. et al.

Ingår i American Journal of Physical Anthropology, s. 638-649, 2020

• DOI för The Neolithic Pitted Ware culture foragers were culturally but not genetically influenced by the Battle Axe culture herders
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Genetic Affinities among Southern Africa Hunter-Gatherers and the Impact of Admixing Farmer and Herder Populations

Vicente, Mário; Jakobsson, Mattias; Ebbesen, Peter; Schlebusch, Carina

Ingår i Molecular biology and evolution, s. 1849-1861, 2019

• DOI för Genetic Affinities among Southern Africa Hunter-Gatherers and the Impact of Admixing Farmer and Herder Populations
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Copy number determination of the gene for the human pancreatic polypeptide receptor NPY4R using read depth analysis and droplet digital PCR.

Shebanits, Kateryna; Günther, Torsten; Johansson, Anna C. V.; Maqbool, Khurram et al.

Ingår i BMC Biotechnology, 2019

• DOI för Copy number determination of the gene for the human pancreatic polypeptide receptor NPY4R using read depth analysis and droplet digital PCR.
• Ladda ner fulltext (pdf) av Copy number determination of the gene for the human pancreatic polypeptide receptor NPY4R using read depth analysis and droplet digital PCR.

The genomic ancestry of the Scandinavian Battle Axe Culture people and their relation to the broader Corded Ware horizon

Malmström, Helena; Günther, Torsten; Svensson, Emma M.; Juras, Anna et al.

Ingår i Proceedings of the Royal Society of London. Biological Sciences, 2019

• DOI för The genomic ancestry of the Scandinavian Battle Axe Culture people and their relation to the broader Corded Ware horizon
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Genetic data and radiocarbon dating question Plovers Lake as a Middle Stone Age hominin-bearing site

Lombard, Marlize; Malmström, Helena; Schlebusch, Carina; Svensson, Emma et al.

Ingår i Journal of Human Evolution, s. 203-209, 2019

• DOI för Genetic data and radiocarbon dating question Plovers Lake as a Middle Stone Age hominin-bearing site

Megalithic tombs in western and northern Neolithic Europe were linked to a kindred society

Sanchez-Quinto, Federico; Malmström, Helena; Fraser, Magdalena; Girdland-Flink, Linus et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 9469-9474, 2019

• DOI för Megalithic tombs in western and northern Neolithic Europe were linked to a kindred society
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Viking warrior women?: Reassessing Birka chamber grave Bj.581

Price, Neil; Hedenstierna-Jonson, Charlotte; Zachrisson, Torun; Kjellström, Anna et al.

Ingår i Antiquity, s. 181-198, 2019

• DOI för Viking warrior women?: Reassessing Birka chamber grave Bj.581
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McSwan: A joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes

Tournebize, Rémi; Poncet, Valérie; Jakobsson, Mattias; Vigouroux, Yves et al.

Ingår i Molecular Ecology Resources, s. 283-295, 2019

• DOI för McSwan: A joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes

Tales of Human Migration, Admixture, and Selection in Africa

Schlebusch, Carina; Jakobsson, Mattias

Ingår i Annual review of genomics and human genetics (Print), s. 405-428, 2018

• DOI för Tales of Human Migration, Admixture, and Selection in Africa

Mitochondrial genomes reveal an east to west cline of steppe ancestry in Corded Ware populations

Juras, Anna; Chylenski, Maciej; Ehler, Edvard; Malmström, Helena et al.

Ingår i Scientific Reports, 2018

• DOI för Mitochondrial genomes reveal an east to west cline of steppe ancestry in Corded Ware populations
• Ladda ner fulltext (pdf) av Mitochondrial genomes reveal an east to west cline of steppe ancestry in Corded Ware populations

Investigating Holocene human population history in North Asia using ancient mitogenomes

Kilinc, Gulsah Merve; Kashuba, Natalija; Yaka, Reyhan; Sumer, Arev Pelin et al.

Ingår i Scientific Reports, 2018

• DOI för Investigating Holocene human population history in North Asia using ancient mitogenomes
• Ladda ner fulltext (pdf) av Investigating Holocene human population history in North Asia using ancient mitogenomes

Patterns of variation in cis-regulatory regions: examining evidence of purifying selection

Naidoo, Thijessen; Sjödin, Per; Schlebusch, Carina; Jakobsson, Mattias

Ingår i BMC Genomics, 2018

• DOI för Patterns of variation in cis-regulatory regions: examining evidence of purifying selection
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Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation

Günther, Torsten; Malmström, Helena; Svensson, Emma; Omrak, Ayca et al.

Ingår i PLoS biology, 2018

• DOI för Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation
• Ladda ner fulltext (pdf) av Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation

Estimating genetic kin relationships in prehistoric populations

Kuhn, Jose Manuel Monroy; Jakobsson, Mattias; Günther, Torsten

Ingår i PLOS ONE, 2018

• DOI för Estimating genetic kin relationships in prehistoric populations
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Ancient genomes suggest the eastern Pontic-Caspian steppe as the source of western Iron Age nomads

Krzewinska, Maja; Kilinc, Gulsah Merve; Juras, Anna; Koptekin, Dilek et al.

Ingår i Science Advances, 2018

• DOI för Ancient genomes suggest the eastern Pontic-Caspian steppe as the source of western Iron Age nomads

The Stone Cist Conundrum: A multidisciplinary approach to investigate Late Neolithic/ Early Bronze Age population demography on the Island of Gotland

Fraser, Magdalena; Sjödin, Per; Sanchez-Quinto, Federico; Evans, Jane et al.

Ingår i Journal of Archaeological Science, s. 324-337, 2018

• DOI för The Stone Cist Conundrum: A multidisciplinary approach to investigate Late Neolithic/ Early Bronze Age population demography on the Island of Gotland

New insights on cultural dualism and population structure in the MiddleNeolithic Funnel Beaker culture on the island of Gotland

Fraser, Magdalena; Sanchez-Quinto, Federico; Evans, Jane; Storå, Jan et al.

Ingår i Journal of Archaeological Science, s. 325-334, 2018

• DOI för New insights on cultural dualism and population structure in the MiddleNeolithic Funnel Beaker culture on the island of Gotland

Genomic and Strontium Isotope Variation Reveal Immigration Patterns in a Viking Age Town

Krzewinska, Maja; Kjellstrom, Anna; Günther, Torsten; Hedenstierna-Jonson, Charlotte et al.

Ingår i Current Biology, s. 2730-27380000000000, 2018

• DOI för Genomic and Strontium Isotope Variation Reveal Immigration Patterns in a Viking Age Town
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Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia

Valdiosera, Cristina; Günther, Torsten; Carlos Vera-Rodriguez, Juan; Urena, Irene et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 3428-3433, 2018

• DOI för Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia

Ancient human DNA: How sequencing the genome of a boy from Ballito Bay changed human history

Lombard, Marlize; Jakobsson, Mattias; Schlebusch, Carina

Ingår i South African Journal of Science, 2018

• DOI för Ancient human DNA: How sequencing the genome of a boy from Ballito Bay changed human history
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Genomic Analyses of Pre-European Conquest Human Remains from the Canary Islands Reveal Close Affinity to Modern North Africans

Rodriguez-Varela, Ricardo; Günther, Torsten; Krzewinska, Maja; Stora, Jan et al.

Ingår i Current Biology, s. 3396-3402, 2017

• DOI för Genomic Analyses of Pre-European Conquest Human Remains from the Canary Islands Reveal Close Affinity to Modern North Africans
• Ladda ner fulltext (pdf) av Genomic Analyses of Pre-European Conquest Human Remains from the Canary Islands Reveal Close Affinity to Modern North Africans

Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago

Schlebusch, Carina; Malmström, Helena; Günther, Torsten; Sjödin, Per et al.

Ingår i Science, s. 652-655, 2017

• DOI för Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago

Northeast African genomic variation shaped by the continuity of indigenous groups and Eurasian migrations

Hollfelder, Nina; Schlebusch, Carina M.; Günther, Torsten; Babiker, Hiba et al.

Ingår i PLOS Genetics, 2017

• DOI för Northeast African genomic variation shaped by the continuity of indigenous groups and Eurasian migrations
• Ladda ner fulltext (pdf) av Northeast African genomic variation shaped by the continuity of indigenous groups and Eurasian migrations

Investigating kinship of Neolithic post-LBK human remains from Krusza Zamkowa, Poland using ancient DNA

Juras, Anna; Chylenski, Maciej; Krenz-Niedbala, Marta; Malmström, Helena et al.

Ingår i Forensic Science International, s. 30-39, 2017

• DOI för Investigating kinship of Neolithic post-LBK human remains from Krusza Zamkowa, Poland using ancient DNA

Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC

Chylenski, Maciej; Juras, Anna; Ehler, Edvard; Malmström, Helena et al.

Ingår i BMC Evolutionary Biology, 2017

• DOI för Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC
• Ladda ner fulltext (pdf) av Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC

A female Viking warrior confirmed by genomics

Hedenstierna-Jonson, Charlotte; Kjellström, Anna; Zachrisson, Torun; Krzewińska, Maja et al.

Ingår i American Journal of Physical Anthropology, s. 853-860, 2017

• DOI för A female Viking warrior confirmed by genomics
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Reply to Lazaridis and Reich: Robust model-based inference of male-biased admixture during Bronze Age migration from the Pontic-Caspian Steppe

Goldberg, Amy; Günther, Torsten; Rosenberg, Noah A.; Jakobsson, Mattias

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2017

• DOI för Reply to Lazaridis and Reich: Robust model-based inference of male-biased admixture during Bronze Age migration from the Pontic-Caspian Steppe

Genetic variation of southern Africa hunter-gatherers and the impact of admixture with farming and pastoralist populations

Vicente, Mário; Ebbesen, Peter; Jakobsson, Mattias; Schlebusch, Carina

Ingår i American Journal of Physical Anthropology, s. 395-395, 2017

• DOI för Genetic variation of southern Africa hunter-gatherers and the impact of admixture with farming and pastoralist populations

Neolithic familial migration contrasts Bronze Age male migration inferred from ancient X chromosomes

Goldberg, Amy; Günther, Torsten; Rosenberg, Noah A.; Jakobsson, Mattias

Ingår i American Journal of Physical Anthropology, s. 196-196, 2017

• DOI för Neolithic familial migration contrasts Bronze Age male migration inferred from ancient X chromosomes

Mobility in Neolithic Central Anatolia: A Comparison of Dental Morphometrics and aDNA

Pilloud, Marin A.; Somel, Mehmet; Haddow, Scott D.; Knusel, Christopher J. et al.

Ingår i American Journal of Physical Anthropology, s. 316-316, 2017

• DOI för Mobility in Neolithic Central Anatolia: A Comparison of Dental Morphometrics and aDNA

Ancient X chromosomes reveal contrasting sex bias in Neolithic and Bronze Age Eurasian migrations

Goldberg, Amy; Günther, Torsten; Rosenberg, Noah A.; Jakobsson, Mattias

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 2657-2662, 2017

• DOI för Ancient X chromosomes reveal contrasting sex bias in Neolithic and Bronze Age Eurasian migrations

Adaptation to infectious disease exposure in indigenous Southern African populations

Owers, Katharine A.; Sjödin, Per; Schlebusch, Carina M.; Skoglund, Pontus et al.

Ingår i Proceedings of the Royal Society of London. Biological Sciences, 2017

• DOI för Adaptation to infectious disease exposure in indigenous Southern African populations

The disappearing San of southeastern Africa and their genetic affinities

Schlebusch, Carina M.; Prins, Frans; Lombard, Marlize; Jakobsson, Mattias et al.

Ingår i Human Genetics, s. 1365-1373, 2016

• DOI för The disappearing San of southeastern Africa and their genetic affinities
• Ladda ner fulltext (pdf) av The disappearing San of southeastern Africa and their genetic affinities

Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc

Jeong, Choongwon; Ozga, Andrew T.; Witonsky, David B.; Malmström, Helena et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 7485-7490, 2016

• DOI för Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc
• Ladda ner fulltext (pdf) av Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc

Inferring Past Effective Population Size from Distributions of Coalescent Times

Gattepaille, Lucie; Günther, Torsten; Jakobsson, Mattias

Ingår i Genetics, s. 1191-1206, 2016

• DOI för Inferring Past Effective Population Size from Distributions of Coalescent Times

Genomic Evidence Establishes Anatolia as the Source of the European Neolithic Gene Pool

Omrak, Ayca; Günther, Torsten; Valdiosera, Cristina; Svensson, Emma M. et al.

Ingår i Current Biology, s. 270-275, 2016

• DOI för Genomic Evidence Establishes Anatolia as the Source of the European Neolithic Gene Pool

Erik den heliges skelett

Sten, Sabine; Lovén, Christian; Kjellström, Anna; Lidén, Kerstin et al.

Ingår i Fornvännen, s. 27-40, 2016

• Ladda ner fulltext (pdf) av Erik den heliges skelett

The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa

Hervella, M.; Svensson, Emma M.; Alberdi, A.; Günther, Torsten et al.

Ingår i Scientific Reports, 2016

• DOI för The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa
• Ladda ner fulltext (pdf) av The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa

Archaeogenomic analysis of ancient Anatolians: first genetic indication for Neolithic cultural diffusion in the Near East

Somel, Mehmet; Kilinc, Gulsah Merve; Ozer, Fusun; Omrak, Ayca et al.

Ingår i American Journal of Physical Anthropology, s. 297-298, 2016

Long-term genetic stability and a high altitude East Asian origin for the peoples of the high valleys of the Himalayan arc

Jeong, Choongwon; Ozga, Andrew T.; Witonsky, David; Malmström, Helena et al.

Ingår i American Journal of Physical Anthropology, s. 185-185, 2016

The genomic footprints of Stone-Age Europeans

Jakobsson, Mattias

Ingår i American Journal of Physical Anthropology, s. 184-184, 2016

HaploPOP: a software that improves population assignment by combining markers into haplotypes

Duforet-Frebourg, Nicolas; Gattepaille, Lucie M.; Blum, Michael G. B.; Jakobsson, Mattias

Ingår i BMC Bioinformatics, 2015

• DOI för HaploPOP: a software that improves population assignment by combining markers into haplotypes
• Ladda ner fulltext (pdf) av HaploPOP: a software that improves population assignment by combining markers into haplotypes

Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques

Günther, Torsten; Valdiosera, Cristina; Malmström, Helena; Urena, Irene et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 11917-11922, 2015

• DOI för Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques

Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process

Malmström, Helena Jankovic; Linderholm, Anna; Skoglund, Pontus; Stora, Jan et al.

Ingår i Philosophical Transactions of the Royal Society of London. Biological Sciences, s. 20130373, 2015

• DOI för Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process

Human Adaptation to Arsenic-Rich Environments

Schlebusch, Carina M.; Gattepaille, Lucie M.; Engstroem, Karin; Vahter, Marie et al.

Ingår i Molecular biology and evolution, s. 1544-1555, 2015

• DOI för Human Adaptation to Arsenic-Rich Environments

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K

Kopelman, Naama M.; Mayzel, Jonathan; Jakobsson, Mattias; Rosenberg, Noah A. et al.

Ingår i Molecular Ecology Resources, s. 1179-1191, 2015

• DOI för Clumpak: a program for identifying clustering modes and packaging population structure inferences across K

Genomic evidence for the Pleistocene and recent population history of Native Americans

Raghavan, Maanasa; Steinruecken, Matthias; Harris, Kelley; Schiffels, Stephan et al.

Ingår i Science, 2015

• DOI för Genomic evidence for the Pleistocene and recent population history of Native Americans

The origin and evolution of maize in the Southwestern United States

da Fonseca, Rute R.; Smith, Bruce D.; Wales, Nathan; Cappellini, Enrico et al.

Ingår i Nature Plants, 2015

• DOI för The origin and evolution of maize in the Southwestern United States

The genetic prehistory of the New World Arctic

Raghavan, Maanasa; DeGiorgio, Michael; Albrechtsen, Anders; Moltke, Ida et al.

Ingår i Science, s. 1020, 2014

• DOI för The genetic prehistory of the New World Arctic

Private haplotypes can reveal local adaptation

Sjöstrand, Agnès E.; Sjödin, Per; Jakobsson, Mattias

Ingår i BMC Genetics, s. 61, 2014

• DOI för Private haplotypes can reveal local adaptation
• Ladda ner fulltext (pdf) av Private haplotypes can reveal local adaptation

Separating endogenous ancient DNA from modern-day contamination: application to a Siberian Neandertal

Skoglund, Pontus; Northoff, Bernd H; Shunkov, Michael V; Derevianko, Anatoli P et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 2229-2234, 2014

• DOI för Separating endogenous ancient DNA from modern-day contamination: application to a Siberian Neandertal

Genetic variation reveals large-scale population expansion and migration during the expansion of Bantu-speaking peoples

Li, Sen; Schlebusch, Carina; Jakobsson, Mattias

Ingår i Proceedings of the Royal Society of London. Biological Sciences, 2014

• DOI för Genetic variation reveals large-scale population expansion and migration during the expansion of Bantu-speaking peoples

Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers

Skoglund, Pontus; Malmstrom, Helena; Omrak, Ayca; Raghavan, Maanasa et al.

Ingår i Science, s. 747-750, 2014

• DOI för Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers

Assessing the Maximum Contribution from Ancient Populations

Sjödin, Per; Skoglund, Pontus; Jakobsson, Mattias

Ingår i Molecular biology and evolution, s. 1248-1260, 2014

• DOI för Assessing the Maximum Contribution from Ancient Populations

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

Rasmussen, Morten; Anzick, Sarah L.; Waters, Michael R.; Skoglund, Pontus et al.

Ingår i Nature, s. 225-229, 2014

• DOI för The genome of a Late Pleistocene human from a Clovis burial site in western Montana

Investigating population history using temporal genetic differentiation

Skoglund, Pontus; Sjödin, Per; Skoglund, Tobias; Lascoux, Martin et al.

Ingår i Molecular biology and evolution, s. 2516-2527, 2014

• DOI för Investigating population history using temporal genetic differentiation

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

Raghavan, Maanasa; Skoglund, Pontus; Graf, Kelly E.; Metspalu, Mait et al.

Ingår i Nature, s. 87-+, 2014

• DOI för Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

Lactase Persistence Alleles Reveal Partial East African Ancestry of Southern African Khoe Pastoralists

Breton, Gwenna; Schlebusch, Carina M.; Lombard, Marlize; Sjödin, Per et al.

Ingår i Current Biology, s. 852-858, 2014

• DOI för Lactase Persistence Alleles Reveal Partial East African Ancestry of Southern African Khoe Pastoralists

Stronger signal of recent selection for lactase persistence in Maasai than in Europeans

Schlebusch, Carina M; Sjödin, Per; Skoglund, Pontus; Jakobsson, Mattias

Ingår i European Journal of Human Genetics, s. 550-553, 2013

• DOI för Stronger signal of recent selection for lactase persistence in Maasai than in Europeans

The Relationship Between F-ST and the Frequency of the Most Frequent Allele

Jakobsson, Mattias; Edge, Michael D.; Rosenberg, Noah A.

Ingår i Genetics, s. 515-528, 2013

• DOI för The Relationship Between F-ST and the Frequency of the Most Frequent Allele

Anisotropic Isolation by Distance: The Main Orientations of Human Genetic Differentiation

Jay, Flora; Sjödin, Per; Jakobsson, Mattias; Blum, Michael G. B.

Ingår i Molecular biology and evolution, s. 513-525, 2013

• DOI för Anisotropic Isolation by Distance: The Main Orientations of Human Genetic Differentiation

Possible positive selection for an arsenic-protective haplotype in humans

Schlebusch, Carina M.; Lewis Jr., C. M.; Vahter, Marie; Engström, Karin et al.

Ingår i Journal of Environmental Health Perspectives, s. 53-58, 2013

• DOI för Possible positive selection for an arsenic-protective haplotype in humans

Accurate sex identification of ancient human remains using DNA shotgun sequencing

Skoglund, Pontus; Stora, Jan; Gotherstrom, Anders; Jakobsson, Mattias

Ingår i Journal of Archaeological Science, s. 4477-4482, 2013

• DOI för Accurate sex identification of ancient human remains using DNA shotgun sequencing

Estimating demographic parameters from large-scale population genomic data using Approximate Bayesian Computation

Li, Sen; Jakobsson, Mattias

Ingår i BMC Genetics, s. 22, 2012

• DOI för Estimating demographic parameters from large-scale population genomic data using Approximate Bayesian Computation
• Ladda ner fulltext (pdf) av Estimating demographic parameters from large-scale population genomic data using Approximate Bayesian Computation

Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe

Skoglund, Pontus; Malmström, Helena; Raghavan, Maanasa; Storå, Jan et al.

Ingår i Science, s. 466-469, 2012

• DOI för Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe

Combining Markers into Haplotypes Can Improve Population Structure Inference

Gattepaille, Lucie M.; Jakobsson, Mattias

Ingår i Genetics, s. 159-174, 2012

• DOI för Combining Markers into Haplotypes Can Improve Population Structure Inference

Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation

Nyström, Veronica; Humphrey, Joanne; Skoglund, Pontus; McKeown, Niall J et al.

Ingår i Molecular Ecology, s. 3391-3402, 2012

• DOI för Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation

Genomic Variation in Seven Khoe-San Groups Reveals Adaptation and Complex African History

Schlebusch, Carina M.; Skoglund, Pontus; Sjödin, Per; Gattepaille, Lucie M. et al.

Ingår i Science, s. 374-379, 2012

• DOI för Genomic Variation in Seven Khoe-San Groups Reveals Adaptation and Complex African History

Resequencing Data Provide No Evidence for a Human Bottleneck in Africa during the Penultimate Glacial Period

Sjödin, Per; Sjöstrand, Agnès E.; Jakobsson, Mattias; Blum, Michael G. B.

Ingår i Molecular biology and evolution, s. 1851-1860, 2012

• DOI för Resequencing Data Provide No Evidence for a Human Bottleneck in Africa during the Penultimate Glacial Period

Genetic variation of 15 autosomal STR loci in various populations from southern Africa

Schlebusch, Carina M; Soodyall, Himla; Jakobsson, Mattias

Ingår i Forensic Science International, 2012

• DOI för Genetic variation of 15 autosomal STR loci in various populations from southern Africa

Genetic variation and population structure of Sudanese populations as indicated by 15 Identifiler sequence-tagged repeat (STR) loci.

Babiker, Hiba; Schlebusch, Carina M; Hassan, Hisham Y; Jakobsson, Mattias

Ingår i Investigative Genetics, 2011

• DOI för Genetic variation and population structure of Sudanese populations as indicated by 15 Identifiler sequence-tagged repeat (STR) loci.

Estimation of Population Divergence Times from Non-Overlapping Genomic Sequences: Examples from Dogs and Wolves

Skoglund, Pontus; Götherström, Anders; Jakobsson, Mattias

Ingår i Molecular biology and evolution, s. 1505-1517, 2011

• DOI för Estimation of Population Divergence Times from Non-Overlapping Genomic Sequences: Examples from Dogs and Wolves

Deep Divergences of Human Gene Trees and Models of Human Origins

Blum, Michael G. B.; Jakobsson, Mattias

Ingår i Molecular biology and evolution, s. 889-898, 2011

• DOI för Deep Divergences of Human Gene Trees and Models of Human Origins

Archaic human ancestry in East Asia

Skoglund, Pontus; Jakobsson, Mattias

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 18301-18306, 2011

• DOI för Archaic human ancestry in East Asia

Haplotype variation and genotype imputation in African populations

Huang, Lucy; Jakobsson, Mattias; Pemberton, Trevor J.; Ibrahim, Muntaser et al.

Ingår i Genetic Epidemiology, s. 766-780, 2011

• DOI för Haplotype variation and genotype imputation in African populations

High frequency of lactose intolerance in a prehistoric hunter-gatherer population in northern Europe

Malmström, Helena; Linderholm, Anna; Liden, Kerstin; Stora, Jan et al.

Ingår i BMC Evolutionary Biology, s. 89, 2010

• DOI för High frequency of lactose intolerance in a prehistoric hunter-gatherer population in northern Europe

Comparing spatial maps of human population-genetic variation using Procrustes analysis

Wang, Z.A.; Szpiech, Z.A.; Degnan, J.H.; Jakobsson, Mattias et al.

Ingår i Statistical Applications in Genetics and Molecular Biology, 2010

• DOI för Comparing spatial maps of human population-genetic variation using Procrustes analysis

Nonlinear Dynamics of Nonsynonymous (d(N)) and Synonymous (d(S)) Substitution Rates Affects Inference of Selection

Wolf, Jochen B. W.; Kuenstner, Axel; Nam, Kiwoong; Jakobsson, Mattias et al.

Ingår i Genome Biology and Evolution, s. 308-319, 2009

• DOI för Nonlinear Dynamics of Nonsynonymous (d(N)) and Synonymous (d(S)) Substitution Rates Affects Inference of Selection

Explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa

DeGiorgio, Michael; Jakobsson, Mattias; Rosenberg, Noah A.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 16057-16062, 2009

• DOI för Explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa

COMPASS: a program for generating serial samples under an infinite sites model

Jakobsson, Mattias

Ingår i Bioinformatics, s. 2845-2847, 2009

• DOI för COMPASS: a program for generating serial samples under an infinite sites model

ADZE: a rarefaction approach for counting alleles private to combinations of populations

Szpiech, Z.A.; Jakobsson, Mattias; Rosenberg, N.A.

Ingår i Bioinformatics, s. 2498-2504, 2008

• DOI för ADZE: a rarefaction approach for counting alleles private to combinations of populations

The relationship between homozygosity and the frequency of the most frequent allele

Rosenberg, Noah A.; Jakobsson, Mattias

Ingår i Genetics, s. 2027-2036, 2008

• DOI för The relationship between homozygosity and the frequency of the most frequent allele

Comparison of sequencing data processing pipelines and application to underrepresented human populations

Breton, Gwenna; Johansson, Anna C. V.; Sjödin, Per; Schlebusch, Carina et al.

Ingår i BMC Bioinformatics

The genetic changes that shaped Neandertals, Denisovans, and modern humans

Zeberg, Hugo; Jakobsson, Mattias; Paabo, Svante

Ingår i Cell, s. 1047-1058, 2024

• DOI för The genetic changes that shaped Neandertals, Denisovans, and modern humans

Epigenomic Modifications in Modern and Ancient Genomes

Niiranen, Laura; Leciej, Dawid; Edlund, Hanna; Bernhardsson, Carolina et al.

Ingår i Genes, 2022

• DOI för Epigenomic Modifications in Modern and Ancient Genomes
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The deep population history in Africa

Hollfelder, Nina; Breton, Gwenna; Sjödin, Per; Jakobsson, Mattias

Ingår i Human Molecular Genetics, 2021

• DOI för The deep population history in Africa
• Ladda ner fulltext (pdf) av The deep population history in Africa

Tracing the peopling of the world through genomics

Nielsen, Rasmus; Akey, Joshua M.; Jakobsson, Mattias; Pritchard, Jonathan K. et al.

Ingår i Nature, s. 302-310, 2017

• DOI för Tracing the peopling of the world through genomics

Genes mirror migrations and cultures in prehistoric Europe - a population genomic perspective

Günther, Torsten; Jakobsson, Mattias

Ingår i Current Opinion in Genetics and Development, s. 115-123, 2016

• DOI för Genes mirror migrations and cultures in prehistoric Europe - a population genomic perspective

Inferring population size changes with sequence and SNP data: lessons from human bottlenecks

Gattepaille, Lucie M.; Jakobsson, Mattias; Blum, M. G. B.

Ingår i Heredity, s. 409-419, 2013

• DOI för Inferring population size changes with sequence and SNP data: lessons from human bottlenecks

Joint analysis of demography and selection in population genetics: where do we stand and where could we go?

Li, Junrui; Li, Haipeng; Jakobsson, Mattias; Li, Sen et al.

Ingår i Molecular Ecology, s. 28-44, 2012

• DOI för Joint analysis of demography and selection in population genetics: where do we stand and where could we go?

Sequence determinants of human microsatellite variability

Pemberton, Trevor J.; Sandefur, Conner I.; Jakobsson, Mattias; Rosenberg, Noah A.

Ingår i BMC Genomics, 2009

• DOI för Sequence determinants of human microsatellite variability

Haplotypic background of a private allele at high frequency in the Americas

Schroeder, Kari B.; Jakobsson, Mattias; Crawford, Michael H.; Schurr, Theodore G. et al.

Ingår i Molecular biology and evolution, s. 995-1016, 2009

• DOI för Haplotypic background of a private allele at high frequency in the Americas

Population Genetic Nature of Copy Number Variation

Sjödin, Per; Jakobsson, Mattias

Ingår i Genomic Strutural Variants, s. 209-223, Humana Press, 2012

• DOI för Population Genetic Nature of Copy Number Variation

Selective sweeps among transcribed pseudogenes underline their utility in the human genome

Naidoo, Thijessen; Sjödin, Per; Schlebusch, Carina; Jakobsson, Mattias

Loss-of-function variants among Khoe and San individuals

Naidoo, Thijessen; Schlebusch, Carina; Sjödin, Per; Soodyall, Himla et al.

Full genomic Y chromosomal variation in southern African Khoe-San populations

Naidoo, Thijessen; Xu, Jingzi; Vicente, Mário; Malmström, Helena et al.

The Evolution of Adaptive traits in Indigenous human populations in Sub-Saharan Africa

Coutinho, Alexandra; Schlebusch, Carina; Jakobsson, Mattias

Deciphering early human history using Approximate Bayesian Computation and 74 whole genomes from Central and Southern Africa

Breton, Gwenna; Sjödin, Per; Zervakis, Panagiotis; Laurent, Romain et al.

The genomic history of the Iberian hunter-gatherers, from the Late Pleistocene to the Early Holocene

Peyroteo Stjerna, Rita; Simões, Luciana G.; Araújo, Ana Cristina; Diniz, Mariana et al.