Sanna Koskiniemi

A CRISPR-Cas9 system protecting E. coli against acquisition of antibiotic resistance genes

Lee, Danna; Muir, Petra; Lundberg, Sara; Lundholm, August et al.

Part of Scientific Reports, 2025

• DOI for A CRISPR-Cas9 system protecting E. coli against acquisition of antibiotic resistance genes
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Contact-dependent growth inhibition (CDI) systems deploy a large family of polymorphic ionophoric toxins for inter-bacterial competition

Halvorsen, Tiffany M.; Schroeder, Kaitlin A.; Jones, Allison M.; Hammarlöf, Disa L. et al.

Part of PLOS Genetics, 2024

• DOI for Contact-dependent growth inhibition (CDI) systems deploy a large family of polymorphic ionophoric toxins for inter-bacterial competition
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Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis  

Edelbroek, Bart; Kjellin, Jonas; Jerlström-Hultqvist, Jon; Koskiniemi, Sanna et al.

Part of Scientific Data, 2024

• DOI for Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis  
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Colicins and T6SS-based competition systems enhance enterotoxigenic E. coli (ETEC) competitiveness

Kjellin, Jonas; Lee, Danna; Steinsland, Hans; Dwane, Rachel et al.

Part of Gut microbes, 2024

• DOI for Colicins and T6SS-based competition systems enhance enterotoxigenic E. coli (ETEC) competitiveness
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OSA Is Associated With the Human Gut Microbiota Composition and Functional Potential in the Population-Based Swedish CardioPulmonary bioImage Study

Baldanzi, Gabriel; Sayols-Baixeras, Sergi; Theorell-Haglöw, Jenny; Dekkers, Koen F. et al.

Part of Chest, p. 503-516, 2023

• DOI for OSA Is Associated With the Human Gut Microbiota Composition and Functional Potential in the Population-Based Swedish CardioPulmonary bioImage Study
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A CRISPR-Cas9 system protecting E. coli against acquisition of antibiotic resistance genes

Lee, Danna; Muir, Petra; Lundberg, Sara; Lundholm, August et al.

Part of Scientific Reports, 2025

• DOI for A CRISPR-Cas9 system protecting E. coli against acquisition of antibiotic resistance genes
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Contact-dependent growth inhibition (CDI) systems deploy a large family of polymorphic ionophoric toxins for inter-bacterial competition

Halvorsen, Tiffany M.; Schroeder, Kaitlin A.; Jones, Allison M.; Hammarlöf, Disa L. et al.

Part of PLOS Genetics, 2024

• DOI for Contact-dependent growth inhibition (CDI) systems deploy a large family of polymorphic ionophoric toxins for inter-bacterial competition
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Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis  

Edelbroek, Bart; Kjellin, Jonas; Jerlström-Hultqvist, Jon; Koskiniemi, Sanna et al.

Part of Scientific Data, 2024

• DOI for Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis  
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Colicins and T6SS-based competition systems enhance enterotoxigenic E. coli (ETEC) competitiveness

Kjellin, Jonas; Lee, Danna; Steinsland, Hans; Dwane, Rachel et al.

Part of Gut microbes, 2024

• DOI for Colicins and T6SS-based competition systems enhance enterotoxigenic E. coli (ETEC) competitiveness
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OSA Is Associated With the Human Gut Microbiota Composition and Functional Potential in the Population-Based Swedish CardioPulmonary bioImage Study

Baldanzi, Gabriel; Sayols-Baixeras, Sergi; Theorell-Haglöw, Jenny; Dekkers, Koen F. et al.

Part of Chest, p. 503-516, 2023

• DOI for OSA Is Associated With the Human Gut Microbiota Composition and Functional Potential in the Population-Based Swedish CardioPulmonary bioImage Study
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RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins

Stenum, Thomas Søndergaard; Kumar, Ankith D.; Sandbaumhueter, Friederike A.; Kjellin, Jonas et al.

Part of Nucleic Acids Research, p. 4572-4587, 2023

• DOI for RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins
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All-electrical antibiotic susceptibility testing within 30 min using silicon nano transistors

Xu, Xingxing; Chen, Si; Yu, Yingtao; Virtanen, Petra et al.

Part of Sensors and actuators. B, Chemical, 2022

• DOI for All-electrical antibiotic susceptibility testing within 30 min using silicon nano transistors
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Escherichia coli EC93 deploys two plasmid- encoded class I contact- dependent growth inhibition systems for antagonistic bacterial interactions

Wäneskog, Marcus; Halvorsen, Tiffany; Filek, Klara; Xu, Feifei et al.

Part of Microbial Genomics, 2021

• DOI for Escherichia coli EC93 deploys two plasmid- encoded class I contact- dependent growth inhibition systems for antagonistic bacterial interactions

Genetic Evidence for SecY Translocon-Mediated Import of Two Contact-Dependent Growth Inhibition (CDI) Toxins

Jones, Allison M.; Virtanen, Petra; Hammarlöf, Disa L.; Allen, William J. et al.

Part of mBio, 2021

• DOI for Genetic Evidence for SecY Translocon-Mediated Import of Two Contact-Dependent Growth Inhibition (CDI) Toxins
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RHS-elements function as type II toxin-antitoxin modules that regulate intra-macrophage replication of Salmonella Typhimurium

Stårsta, Magnus; Hammarlöf, Disa L.; Wäneskog, Marcus; Schlegel, Susan et al.

Part of PLOS Genetics, 2020

• DOI for RHS-elements function as type II toxin-antitoxin modules that regulate intra-macrophage replication of Salmonella Typhimurium
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Class II contact‐dependent growth inhibition (CDI) systems allow for broad‐range cross‐species toxin delivery within the Enterobacteriaceae family

Virtanen, Petra; Wäneskog, Marcus; Koskiniemi, Sanna

Part of Molecular Microbiology, p. 1109-1125, 2019

• DOI for Class II contact‐dependent growth inhibition (CDI) systems allow for broad‐range cross‐species toxin delivery within the Enterobacteriaceae family
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Functional plasticity of antibacterial EndoU toxins

Michalska, Karolina; Nhan, Dinh Quan; Willett, Julia L. E.; Stols, Lucy M. et al.

Part of Molecular Microbiology, p. 509-527, 2018

• DOI for Functional plasticity of antibacterial EndoU toxins

Contact-dependent growth inhibition induces high levels of antibiotic-tolerant persister cells in clonal bacterial populations

Ghosh, Anirban; Baltekin, Özden; Wäneskog, Marcus; Elkhalifa, Dina et al.

Part of EMBO Journal, 2018

• DOI for Contact-dependent growth inhibition induces high levels of antibiotic-tolerant persister cells in clonal bacterial populations

Evolution of high-level resistance during low-level antibiotic exposure

Wistrand-Yuen, Erik; Knopp, Michael; Hjort, Karin; Koskiniemi, Sanna et al.

Part of Nature Communications, 2018

• DOI for Evolution of high-level resistance during low-level antibiotic exposure
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Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition

Amlinger, Lina; Hoekzema, Mirthe; Wagner, Gerhart E. H.; Koskiniemi, Sanna et al.

Part of Scientific Reports, 2017

• DOI for Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition
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CdiA Effectors Use Modular Receptor-Binding Domains To Recognize Target Bacteria

Ruhe, Zachary C.; Nguyen, Josephine Y.; Xiong, Jing; Koskiniemi, Sanna et al.

Part of mBio, 2017

• DOI for CdiA Effectors Use Modular Receptor-Binding Domains To Recognize Target Bacteria
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Arming the Neighborhood

Koskiniemi, Sanna; Elf, Johan

Part of Developmental Cell, p. 5-6, 2016

• DOI for Arming the Neighborhood

Pathoadaptive Mutations in Salmonella enterica Isolated after Serial Passage in Mice

Koskiniemi, Sanna; Gibbons, Henry S.; Sandegren, Linus; Anwar, Naeem et al.

Part of PLOS ONE, 2013

• DOI for Pathoadaptive Mutations in Salmonella enterica Isolated after Serial Passage in Mice
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Selection-driven genome reduction in bacteria

Koskiniemi, Sanna; Sun, Song; Berg, Otto; Andersson, Dan I.

Part of PLOS genetics, 2012

• DOI for Selection-driven genome reduction in bacteria
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Activation of cryptic aminoglycoside resistance in Salmonella enterica

Koskiniemi, Sanna; Pränting, Maria; Gullberg, Erik; Näsvall, Joakim et al.

Part of Molecular Microbiology, p. 1464-1478, 2011

• DOI for Activation of cryptic aminoglycoside resistance in Salmonella enterica

Effect of the translesion DNA polymerases, endonucleases and RpoS on mutation rates in Salmonella typhimurium

Koskiniemi, Sanna; Hughes, Diarmaid; Andersson, Dan I

Part of Genetics, p. 783-795, 2010

• DOI for Effect of the translesion DNA polymerases, endonucleases and RpoS on mutation rates in Salmonella typhimurium

Translesion DNA polymerases are required for spontaneous deletion formation in Salmonella typhimurium

Koskiniemi, Sanna; Andersson, Dan I

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 10248-10253, 2009

• DOI for Translesion DNA polymerases are required for spontaneous deletion formation in Salmonella typhimurium

Bacterial genome size reduction by experimental evolution

Nilsson, A I; Koskiniemi, Sanna; Eriksson, S; Kugelberg, E et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 12112-12116, 2005

• DOI for Bacterial genome size reduction by experimental evolution

Biological roles of translesion synthesis DNA polymerases in eubacteria

Andersson, Dan I.; Koskiniemi, Sanna; Hughes, Diarmaid

Part of Molecular Microbiology, p. 540-548, 2010

• DOI for Biological roles of translesion synthesis DNA polymerases in eubacteria

Dynamics of the Bacterial Genome: Rates and Mechanisms of Mutation

Koskiniemi, Sanna

2010

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Variation in spontaneous deletion rates at different locations of the Salmonella typhimurium chromosome

Koskiniemi, Sanna; Andersson, Dan I

A lab-on-a-silicon-chip platform for all-electrical antibiotic susceptibility tests with a sample-to-results time within 20 minutes

Xu, Zheqiang; Nolan, Victoria C.; Yu, Yingtao; Muir, Petra et al.