Sanna Koskiniemi

A CRISPR-Cas9 system protecting E. coli against acquisition of antibiotic resistance genes

Lee, Danna; Muir, Petra; Lundberg, Sara; Lundholm, August et al.

Ingår i Scientific Reports, 2025

• DOI för A CRISPR-Cas9 system protecting E. coli against acquisition of antibiotic resistance genes
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Contact-dependent growth inhibition (CDI) systems deploy a large family of polymorphic ionophoric toxins for inter-bacterial competition

Halvorsen, Tiffany M.; Schroeder, Kaitlin A.; Jones, Allison M.; Hammarlöf, Disa L. et al.

Ingår i PLOS Genetics, 2024

• DOI för Contact-dependent growth inhibition (CDI) systems deploy a large family of polymorphic ionophoric toxins for inter-bacterial competition
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Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis  

Edelbroek, Bart; Kjellin, Jonas; Jerlström-Hultqvist, Jon; Koskiniemi, Sanna et al.

Ingår i Scientific Data, 2024

• DOI för Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis  
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Colicins and T6SS-based competition systems enhance enterotoxigenic E. coli (ETEC) competitiveness

Kjellin, Jonas; Lee, Danna; Steinsland, Hans; Dwane, Rachel et al.

Ingår i Gut microbes, 2024

• DOI för Colicins and T6SS-based competition systems enhance enterotoxigenic E. coli (ETEC) competitiveness
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OSA Is Associated With the Human Gut Microbiota Composition and Functional Potential in the Population-Based Swedish CardioPulmonary bioImage Study

Baldanzi, Gabriel; Sayols-Baixeras, Sergi; Theorell-Haglöw, Jenny; Dekkers, Koen F. et al.

Ingår i Chest, s. 503-516, 2023

• DOI för OSA Is Associated With the Human Gut Microbiota Composition and Functional Potential in the Population-Based Swedish CardioPulmonary bioImage Study
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A CRISPR-Cas9 system protecting E. coli against acquisition of antibiotic resistance genes

Lee, Danna; Muir, Petra; Lundberg, Sara; Lundholm, August et al.

Ingår i Scientific Reports, 2025

• DOI för A CRISPR-Cas9 system protecting E. coli against acquisition of antibiotic resistance genes
• Ladda ner fulltext (pdf) av A CRISPR-Cas9 system protecting E. coli against acquisition of antibiotic resistance genes

Contact-dependent growth inhibition (CDI) systems deploy a large family of polymorphic ionophoric toxins for inter-bacterial competition

Halvorsen, Tiffany M.; Schroeder, Kaitlin A.; Jones, Allison M.; Hammarlöf, Disa L. et al.

Ingår i PLOS Genetics, 2024

• DOI för Contact-dependent growth inhibition (CDI) systems deploy a large family of polymorphic ionophoric toxins for inter-bacterial competition
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Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis  

Edelbroek, Bart; Kjellin, Jonas; Jerlström-Hultqvist, Jon; Koskiniemi, Sanna et al.

Ingår i Scientific Data, 2024

• DOI för Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis  
• Ladda ner fulltext (pdf) av Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis  

Colicins and T6SS-based competition systems enhance enterotoxigenic E. coli (ETEC) competitiveness

Kjellin, Jonas; Lee, Danna; Steinsland, Hans; Dwane, Rachel et al.

Ingår i Gut microbes, 2024

• DOI för Colicins and T6SS-based competition systems enhance enterotoxigenic E. coli (ETEC) competitiveness
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OSA Is Associated With the Human Gut Microbiota Composition and Functional Potential in the Population-Based Swedish CardioPulmonary bioImage Study

Baldanzi, Gabriel; Sayols-Baixeras, Sergi; Theorell-Haglöw, Jenny; Dekkers, Koen F. et al.

Ingår i Chest, s. 503-516, 2023

• DOI för OSA Is Associated With the Human Gut Microbiota Composition and Functional Potential in the Population-Based Swedish CardioPulmonary bioImage Study
• Ladda ner fulltext (pdf) av OSA Is Associated With the Human Gut Microbiota Composition and Functional Potential in the Population-Based Swedish CardioPulmonary bioImage Study

RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins

Stenum, Thomas Søndergaard; Kumar, Ankith D.; Sandbaumhueter, Friederike A.; Kjellin, Jonas et al.

Ingår i Nucleic Acids Research, s. 4572-4587, 2023

• DOI för RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins
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All-electrical antibiotic susceptibility testing within 30 min using silicon nano transistors

Xu, Xingxing; Chen, Si; Yu, Yingtao; Virtanen, Petra et al.

Ingår i Sensors and actuators. B, Chemical, 2022

• DOI för All-electrical antibiotic susceptibility testing within 30 min using silicon nano transistors
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Escherichia coli EC93 deploys two plasmid- encoded class I contact- dependent growth inhibition systems for antagonistic bacterial interactions

Wäneskog, Marcus; Halvorsen, Tiffany; Filek, Klara; Xu, Feifei et al.

Ingår i Microbial Genomics, 2021

• DOI för Escherichia coli EC93 deploys two plasmid- encoded class I contact- dependent growth inhibition systems for antagonistic bacterial interactions

Genetic Evidence for SecY Translocon-Mediated Import of Two Contact-Dependent Growth Inhibition (CDI) Toxins

Jones, Allison M.; Virtanen, Petra; Hammarlöf, Disa L.; Allen, William J. et al.

Ingår i mBio, 2021

• DOI för Genetic Evidence for SecY Translocon-Mediated Import of Two Contact-Dependent Growth Inhibition (CDI) Toxins
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RHS-elements function as type II toxin-antitoxin modules that regulate intra-macrophage replication of Salmonella Typhimurium

Stårsta, Magnus; Hammarlöf, Disa L.; Wäneskog, Marcus; Schlegel, Susan et al.

Ingår i PLOS Genetics, 2020

• DOI för RHS-elements function as type II toxin-antitoxin modules that regulate intra-macrophage replication of Salmonella Typhimurium
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Class II contact‐dependent growth inhibition (CDI) systems allow for broad‐range cross‐species toxin delivery within the Enterobacteriaceae family

Virtanen, Petra; Wäneskog, Marcus; Koskiniemi, Sanna

Ingår i Molecular Microbiology, s. 1109-1125, 2019

• DOI för Class II contact‐dependent growth inhibition (CDI) systems allow for broad‐range cross‐species toxin delivery within the Enterobacteriaceae family
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Functional plasticity of antibacterial EndoU toxins

Michalska, Karolina; Nhan, Dinh Quan; Willett, Julia L. E.; Stols, Lucy M. et al.

Ingår i Molecular Microbiology, s. 509-527, 2018

• DOI för Functional plasticity of antibacterial EndoU toxins

Contact-dependent growth inhibition induces high levels of antibiotic-tolerant persister cells in clonal bacterial populations

Ghosh, Anirban; Baltekin, Özden; Wäneskog, Marcus; Elkhalifa, Dina et al.

Ingår i EMBO Journal, 2018

• DOI för Contact-dependent growth inhibition induces high levels of antibiotic-tolerant persister cells in clonal bacterial populations

Evolution of high-level resistance during low-level antibiotic exposure

Wistrand-Yuen, Erik; Knopp, Michael; Hjort, Karin; Koskiniemi, Sanna et al.

Ingår i Nature Communications, 2018

• DOI för Evolution of high-level resistance during low-level antibiotic exposure
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Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition

Amlinger, Lina; Hoekzema, Mirthe; Wagner, Gerhart E. H.; Koskiniemi, Sanna et al.

Ingår i Scientific Reports, 2017

• DOI för Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition
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CdiA Effectors Use Modular Receptor-Binding Domains To Recognize Target Bacteria

Ruhe, Zachary C.; Nguyen, Josephine Y.; Xiong, Jing; Koskiniemi, Sanna et al.

Ingår i mBio, 2017

• DOI för CdiA Effectors Use Modular Receptor-Binding Domains To Recognize Target Bacteria
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Arming the Neighborhood

Koskiniemi, Sanna; Elf, Johan

Ingår i Developmental Cell, s. 5-6, 2016

• DOI för Arming the Neighborhood

Pathoadaptive Mutations in Salmonella enterica Isolated after Serial Passage in Mice

Koskiniemi, Sanna; Gibbons, Henry S.; Sandegren, Linus; Anwar, Naeem et al.

Ingår i PLOS ONE, 2013

• DOI för Pathoadaptive Mutations in Salmonella enterica Isolated after Serial Passage in Mice
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Selection-driven genome reduction in bacteria

Koskiniemi, Sanna; Sun, Song; Berg, Otto; Andersson, Dan I.

Ingår i PLOS genetics, 2012

• DOI för Selection-driven genome reduction in bacteria
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Activation of cryptic aminoglycoside resistance in Salmonella enterica

Koskiniemi, Sanna; Pränting, Maria; Gullberg, Erik; Näsvall, Joakim et al.

Ingår i Molecular Microbiology, s. 1464-1478, 2011

• DOI för Activation of cryptic aminoglycoside resistance in Salmonella enterica

Effect of the translesion DNA polymerases, endonucleases and RpoS on mutation rates in Salmonella typhimurium

Koskiniemi, Sanna; Hughes, Diarmaid; Andersson, Dan I

Ingår i Genetics, s. 783-795, 2010

• DOI för Effect of the translesion DNA polymerases, endonucleases and RpoS on mutation rates in Salmonella typhimurium

Translesion DNA polymerases are required for spontaneous deletion formation in Salmonella typhimurium

Koskiniemi, Sanna; Andersson, Dan I

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 10248-10253, 2009

• DOI för Translesion DNA polymerases are required for spontaneous deletion formation in Salmonella typhimurium

Bacterial genome size reduction by experimental evolution

Nilsson, A I; Koskiniemi, Sanna; Eriksson, S; Kugelberg, E et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 12112-12116, 2005

• DOI för Bacterial genome size reduction by experimental evolution

Biological roles of translesion synthesis DNA polymerases in eubacteria

Andersson, Dan I.; Koskiniemi, Sanna; Hughes, Diarmaid

Ingår i Molecular Microbiology, s. 540-548, 2010

• DOI för Biological roles of translesion synthesis DNA polymerases in eubacteria

Dynamics of the Bacterial Genome: Rates and Mechanisms of Mutation

Koskiniemi, Sanna

2010

• Ladda ner fulltext (pdf) av Dynamics of the Bacterial Genome: Rates and Mechanisms of Mutation

Variation in spontaneous deletion rates at different locations of the Salmonella typhimurium chromosome

Koskiniemi, Sanna; Andersson, Dan I

A lab-on-a-silicon-chip platform for all-electrical antibiotic susceptibility tests with a sample-to-results time within 20 minutes

Xu, Zheqiang; Nolan, Victoria C.; Yu, Yingtao; Muir, Petra et al.