Martin Ryberg

Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae

Bonito, Gregory; Miyauchi, Shingo; Hayes, Richard D.; Tan, Hao et al.

Ingår i Current Biology, s. 4135-4150000000, 2025

• DOI för Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae

Early germline sequestration in a basidiomycete fungus

Hiltunen Thorén, Markus; Olsson, Boel; Vonk, Peter Jan; Siljestam, Mattias et al.

Ingår i Science, s. 720-723, 2025

• DOI för Early germline sequestration in a basidiomycete fungus

Spatial distribution and influence of the microclimate on the natural production of Amanita masasiensis in the Soudano-Guinean ecozone (West Africa)

Aboua, Hance Muriel N.; Badou, Sylvestre A.; Houdanon, Roel D.; Boukary, Abdoul-Azize et al.

Ingår i Forest Ecology and Management, 2025

• DOI för Spatial distribution and influence of the microclimate on the natural production of Amanita masasiensis in the Soudano-Guinean ecozone (West Africa)

Evolution of a bipolar sexual compatibility system in Marasmius

Thoren, Markus Hiltunen; Stanojkovic, Aleksandar; Ryberg, Martin; Johannesson, Hanna

Ingår i Mycologia, s. 19-33, 2025

• DOI för Evolution of a bipolar sexual compatibility system in Marasmius
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Diversity and Multigene Phylogeny of the Genus Floccularia (Agaricales, Basidiomycota)

Ge, Zai-Wei; Qu, Hua; Saba, Malka; Gao, Tian et al.

Ingår i Journal of Fungi, 2025

• DOI för Diversity and Multigene Phylogeny of the Genus Floccularia (Agaricales, Basidiomycota)
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Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae

Bonito, Gregory; Miyauchi, Shingo; Hayes, Richard D.; Tan, Hao et al.

Ingår i Current Biology, s. 4135-4150000000, 2025

• DOI för Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae

Early germline sequestration in a basidiomycete fungus

Hiltunen Thorén, Markus; Olsson, Boel; Vonk, Peter Jan; Siljestam, Mattias et al.

Ingår i Science, s. 720-723, 2025

• DOI för Early germline sequestration in a basidiomycete fungus

Spatial distribution and influence of the microclimate on the natural production of Amanita masasiensis in the Soudano-Guinean ecozone (West Africa)

Aboua, Hance Muriel N.; Badou, Sylvestre A.; Houdanon, Roel D.; Boukary, Abdoul-Azize et al.

Ingår i Forest Ecology and Management, 2025

• DOI för Spatial distribution and influence of the microclimate on the natural production of Amanita masasiensis in the Soudano-Guinean ecozone (West Africa)

Evolution of a bipolar sexual compatibility system in Marasmius

Thoren, Markus Hiltunen; Stanojkovic, Aleksandar; Ryberg, Martin; Johannesson, Hanna

Ingår i Mycologia, s. 19-33, 2025

• DOI för Evolution of a bipolar sexual compatibility system in Marasmius
• Ladda ner fulltext (pdf) av Evolution of a bipolar sexual compatibility system in Marasmius

Diversity and Multigene Phylogeny of the Genus Floccularia (Agaricales, Basidiomycota)

Ge, Zai-Wei; Qu, Hua; Saba, Malka; Gao, Tian et al.

Ingår i Journal of Fungi, 2025

• DOI för Diversity and Multigene Phylogeny of the Genus Floccularia (Agaricales, Basidiomycota)
• Ladda ner fulltext (pdf) av Diversity and Multigene Phylogeny of the Genus Floccularia (Agaricales, Basidiomycota)

Five new species in Piloderma (Atheliales, Basidiomycota) and epitypification of P. byssinum

Svantesson, Sten; Tondeleir, Lowie; Kulju, Matti; Irsenaite, Reda et al.

Ingår i Fungal Biology, 2025

• DOI för Five new species in Piloderma (Atheliales, Basidiomycota) and epitypification of P. byssinum
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High rate of gene family evolution in proximity to the origin of ectomycorrhizal symbiosis in Inocybaceae

Khan, Faheema Kalsoom; Sánchez-García, Marisol; Johannesson, Hanna; Ryberg, Martin

Ingår i New Phytologist, s. 219-234, 2024

• DOI för High rate of gene family evolution in proximity to the origin of ectomycorrhizal symbiosis in Inocybaceae
• Ladda ner fulltext (pdf) av High rate of gene family evolution in proximity to the origin of ectomycorrhizal symbiosis in Inocybaceae

20 years of bibliometric data illustrates a lack of concordance between journal impact factor and fungal species discovery in systematic mycology

Nilsson, R. Henrik; Jansson, Arnold Tobias; Wurzbacher, Christian; Anslan, Sten et al.

Ingår i MycoKeys, s. 273-285, 2024

• DOI för 20 years of bibliometric data illustrates a lack of concordance between journal impact factor and fungal species discovery in systematic mycology
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The 2024 Outline of Fungi and fungus-like taxa

Hyde, K. D.; Ryberg, Martin; Svantesson, Sten; Zvyagina, E.

Ingår i Mycosphere, s. 5146-6239, 2024

• DOI för The 2024 Outline of Fungi and fungus-like taxa

The evolution of ectomycorrhizal symbiosis and host-plant switches are the main drivers for diversification of Amanitaceae (Agaricales, Basidiomycota)

Cai, Qing; Codjia, Jean Evans I.; Buyck, Bart; Cui, Yang-Yang et al.

Ingår i BMC Biology, 2024

• DOI för The evolution of ectomycorrhizal symbiosis and host-plant switches are the main drivers for diversification of Amanitaceae (Agaricales, Basidiomycota)
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How, not if, is the question mycologists should be asking about DNA-based typification

Nilsson, R. Henrik; Ryberg, Martin; Wurzbacher, Christian; Tedersoo, Leho et al.

Ingår i MycoKeys, s. 143-157, 2023

• DOI för How, not if, is the question mycologists should be asking about DNA-based typification

Phylogenetic diversity and affiliation of tropical African ectomycorrhizal fungi

Houdanon, R. D.; Furneaux, Brendan R.; Yorou, N. S.; Ryberg, Martin

Ingår i Mycosphere, s. 13-55, 2023

• DOI för Phylogenetic diversity and affiliation of tropical African ectomycorrhizal fungi
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Global consortium for the classification of fungi and fungus-like taxa

Hyde, K. D.; Ryberg, Martin; Svantesson, Sten; Tibell, Leif et al.

Ingår i Mycosphere, s. 1960-2012, 2023

• DOI för Global consortium for the classification of fungi and fungus-like taxa
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Cytological studies reveal high variation in ascospore number and shape and conidia produced directly from ascospores in Morchella galilaea

Du, Xi-Hui; Wang, Si-Yue; Ryberg, Martin; Guo, Yong-Jie et al.

Ingår i Frontiers in Microbiology, 2023

• DOI för Cytological studies reveal high variation in ascospore number and shape and conidia produced directly from ascospores in Morchella galilaea
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A new species of Inosperma, and first record of I. afromelliolens (Inocybaceae, Fungi) from West Africa

Aïgnon, Hyppolite L.; Fan, Yu-Guang; De Kesel, André; Bahram, Mohammad et al.

Ingår i PLOS ONE, 2023

• DOI för A new species of Inosperma, and first record of I. afromelliolens (Inocybaceae, Fungi) from West Africa
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Historical biogeography and diversification of ringless Amanita (section Vaginatae) support an African origin and suggest niche conservatism in the Americas

Codjia, Jean Evans; Sanchez-Ramirez, Santiago; Ebika, Sydney T. Ndolo; Wu, Gang et al.

Ingår i Molecular Phylogenetics and Evolution, 2023

• DOI för Historical biogeography and diversification of ringless Amanita (section Vaginatae) support an African origin and suggest niche conservatism in the Americas

Impact of model assumptions on the inference of the evolution of ectomycorrhizal symbiosis in fungi

Sheikh, Sanea; Kalsoom Khan, Faheema; Bahram, Mohammad; Ryberg, Martin

Ingår i Scientific Reports, 2022

• DOI för Impact of model assumptions on the inference of the evolution of ectomycorrhizal symbiosis in fungi
• Ladda ner fulltext (pdf) av Impact of model assumptions on the inference of the evolution of ectomycorrhizal symbiosis in fungi

Stage-specific transposon activity in the life cycle of the fairy-ring mushroom Marasmius oreades

Hiltunen Thorén, Markus; Ament-Velásquez, Sandra Lorena; Ryberg, Martin; Johannesson, Hanna

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2022

• DOI för Stage-specific transposon activity in the life cycle of the fairy-ring mushroom Marasmius oreades

Paxilloboletus gen. nov., a new lamellate bolete genus from tropical Africa

Badou, Sylvestre A.; Furneaux, Brendan R.; De Kesel, André; Kalsoom, Faheema et al.

Ingår i Mycological progress, s. 243-256, 2022

• DOI för Paxilloboletus gen. nov., a new lamellate bolete genus from tropical Africa
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Amanita sect. Phalloideae: two interesting non-lethal species from West Africa

Codjia, Jean Evans; Wang, Pan Meng; Ryberg, Martin; Yorou, Nourou S. et al.

Ingår i Mycological progress, 2022

• DOI för Amanita sect. Phalloideae: two interesting non-lethal species from West Africa

Phylogeny and evolution of morphological structures in a highly diverse lineage of fruiting-body-forming amoebae, order Trichiales (Myxomycetes, Amoebozoa)

Garcia-Cunchillos, Ivan; Zamora, Juan Carlos; Ryberg, Martin; Lado, Carlos

Ingår i Molecular Phylogenetics and Evolution, 2022

• DOI för Phylogeny and evolution of morphological structures in a highly diverse lineage of fruiting-body-forming amoebae, order Trichiales (Myxomycetes, Amoebozoa)
• Ladda ner fulltext (pdf) av Phylogeny and evolution of morphological structures in a highly diverse lineage of fruiting-body-forming amoebae, order Trichiales (Myxomycetes, Amoebozoa)

On the evolution of ectomycorrhizal fungi

Ryberg, Martin; Kalsoom, Faheema; Sanchez-Garcia, M.

Ingår i Mycosphere, 2022

• DOI för On the evolution of ectomycorrhizal fungi
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The curse of the uncultured fungus

Abarenkov, Kessy; Kristiansson, Erik; Ryberg, Martin; Nogal-Prata, Sandra et al.

Ingår i MycoKeys, s. 177-194, 2022

• DOI för The curse of the uncultured fungus
• Ladda ner fulltext (pdf) av The curse of the uncultured fungus

Long- and short-read metabarcoding technologies reveal similar spatiotemporal structures in fungal communities

Furneaux, Brendan R.; Bahram, Mohammad; Rosling, Anna; Yorou, Nourou S. et al.

Ingår i Molecular Ecology Resources, s. 1833-1849, 2021

• DOI för Long- and short-read metabarcoding technologies reveal similar spatiotemporal structures in fungal communities
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ARBitR: an overlap-aware genome assembly scaffolder for linked reads

Hiltunen, Markus; Ryberg, Martin; Johannesson, Hanna

Ingår i Bioinformatics, s. 2203-2205, 2021

• DOI för ARBitR: an overlap-aware genome assembly scaffolder for linked reads
• Ladda ner fulltext (pdf) av ARBitR: an overlap-aware genome assembly scaffolder for linked reads

Mallocybe africana (Inocybaceae, Fungi), the first species of Mallocybe described from Africa

Aignon, Hyppolite L.; Naseer, Arooj; Matheny, Brandon P.; Yorou, Nourou S. et al.

Ingår i Phytotaxa, s. 49-60, 2021

• DOI för Mallocybe africana (Inocybaceae, Fungi), the first species of Mallocybe described from Africa
• Ladda ner fulltext (pdf) av Mallocybe africana (Inocybaceae, Fungi), the first species of Mallocybe described from Africa

Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa

Meidl, Peter; Furneaux, Brendan R.; Tchan, Kassim; Kluting, Kerri L. et al.

Ingår i MycoKeys, s. 45-68, 2021

• DOI för Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa
• Ladda ner fulltext (pdf) av Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa

Three new species of Inosperma (Agaricales, Inocybaceae) from Tropical Africa

Aignon, Hyppolite L.; Jabeen, Sana; Naseer, Arooj; Yorou, Nourou S. et al.

Ingår i MycoKeys, s. 97-116, 2021

• DOI för Three new species of Inosperma (Agaricales, Inocybaceae) from Tropical Africa
• Ladda ner fulltext (pdf) av Three new species of Inosperma (Agaricales, Inocybaceae) from Tropical Africa

Multigene phylogeny and taxonomic revision of Atheliales s.l.: Reinstatement of three families and one new family, Lobuliciaceae fam. nov.

Sulistyo, Bobby P.; Larsson, Karl-Henrik; Haelewaters, Danny; Ryberg, Martin

Ingår i Fungal Biology, s. 239-255, 2021

• DOI för Multigene phylogeny and taxonomic revision of Atheliales s.l.: Reinstatement of three families and one new family, Lobuliciaceae fam. nov.
• Ladda ner fulltext (pdf) av Multigene phylogeny and taxonomic revision of Atheliales s.l.: Reinstatement of three families and one new family, Lobuliciaceae fam. nov.

How are basidiospore size measurements affected by drying?

Dramani, R.; Hegbe, A. D.M.T.; Tabe, A.; Badou, A. S. et al.

Ingår i Current Research in Environmental and Applied Mycology, s. 63-70, 2020

• DOI för How are basidiospore size measurements affected by drying?

FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

Polme, Sergei; Abarenkov, Kessy; Henrik Nilsson, R.; Lindahl, Bjorn D. et al.

Ingår i Fungal diversity, s. 1-16, 2020

• DOI för FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

Morphology, Multilocus Phylogeny, and Toxin Analysis Reveal Amanita albolimbata, the First Lethal Amanita Species From Benin, West Africa

Codjia, Jean Evans I.; Cai, Qing; Zhou, Sheng Wen; Luo, Hong et al.

Ingår i Frontiers in Microbiology, 2020

• DOI för Morphology, Multilocus Phylogeny, and Toxin Analysis Reveal Amanita albolimbata, the First Lethal Amanita Species From Benin, West Africa
• Ladda ner fulltext (pdf) av Morphology, Multilocus Phylogeny, and Toxin Analysis Reveal Amanita albolimbata, the First Lethal Amanita Species From Benin, West Africa

Naming the untouchable - environmental sequences and niche partitioning as taxonomical evidence in fungi

Kalsoom Khan, Faheema; Kluting, Kerri L.; Tangrot, Jeanette; Urbina, Hector et al.

Ingår i IMA Fungus, 2020

• DOI för Naming the untouchable - environmental sequences and niche partitioning as taxonomical evidence in fungi
• Ladda ner fulltext (pdf) av Naming the untouchable - environmental sequences and niche partitioning as taxonomical evidence in fungi

Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi

Sanchez-Garcia, Marisol; Ryberg, Martin; Kalsoom Khan, Faheema; Varga, Torda et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 32528-32534, 2020

• DOI för Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi
• Ladda ner fulltext (pdf) av Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi

When mycologists describe new species, not all relevant information is provided (clearly enough)

Durkin, Louisa; Jansson, Tobias; Sanchez, Marisol; Khomich, Maryia et al.

Ingår i MycoKeys, s. 109-128, 2020

• DOI för When mycologists describe new species, not all relevant information is provided (clearly enough)
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The genus Catathelasma (Catathelasmataceae, Basidiomycota) in China

Ge, Zai-Wei; Wu, Jian-Yun; Hao, Yan-Jia; Zhang, Qingying et al.

Ingår i MycoKeys, s. 123-138, 2020

• DOI för The genus Catathelasma (Catathelasmataceae, Basidiomycota) in China
• Ladda ner fulltext (pdf) av The genus Catathelasma (Catathelasmataceae, Basidiomycota) in China

Maintenance of High Genome Integrity over Vegetative Growth in the Fairy-Ring Mushroom Marasmius oreades

Hiltunen, Markus; Grudzinska-Sterno, Magdalena; Wallerman, Ola; Ryberg, Martin et al.

Ingår i Current Biology, s. 2758-2765, 2019

• DOI för Maintenance of High Genome Integrity over Vegetative Growth in the Fairy-Ring Mushroom Marasmius oreades

The genome and microbiome of a dikaryotic fungus (Inocybe terrigena, Inocybaceae) revealed by metagenomics

Bahram, Mohammad; Vanderpool, Dan; Pent, Mari; Hiltunen, Markus et al.

Ingår i Environmental Microbiology Reports, s. 155-166, 2018

• DOI för The genome and microbiome of a dikaryotic fungus (Inocybe terrigena, Inocybaceae) revealed by metagenomics

Complex effects of mammalian grazing on extramatrical mycelial biomass in the Scandes forest-tundra ecotone

Vowles, Tage; Lindwall, Frida; Ekblad, Alf; Bahram, Mohammad et al.

Ingår i Ecology and Evolution, s. 1019-1030, 2018

• DOI för Complex effects of mammalian grazing on extramatrical mycelial biomass in the Scandes forest-tundra ecotone
• Ladda ner fulltext (pdf) av Complex effects of mammalian grazing on extramatrical mycelial biomass in the Scandes forest-tundra ecotone

Two new African siblings of Pulveroboletus ravenelii (Boletaceae)

Badou, Sylvestre A.; De Kesel, Andre; Raspe, Olivier; Ryberg, Martin et al.

Ingår i MycoKeys, s. 115-130, 2018

• DOI för Two new African siblings of Pulveroboletus ravenelii (Boletaceae)
• Ladda ner fulltext (pdf) av Two new African siblings of Pulveroboletus ravenelii (Boletaceae)

Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies

Pent, Mari; Hiltunen, Markus; Poldmaa, Kadri; Furneaux, Brendan R. et al.

Ingår i Environmental Microbiology, s. 1641-1650, 2018

• DOI för Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies

Structure and function of the global topsoil microbiome.

Bahram, Mohammad; Hildebrand, Falk; Forslund, Sofia K; Anderson, Jennifer L et al.

Ingår i Nature, s. 233-237, 2018

• DOI för Structure and function of the global topsoil microbiome.

High-level classification of the Fungi and a tool for evolutionary ecological analyses

Tedersoo, Leho; Sanchez-Ramirez, Santiago; Koljalg, Urmas; Bahram, Mohammad et al.

Ingår i Fungal diversity, s. 135-159, 2018

• DOI för High-level classification of the Fungi and a tool for evolutionary ecological analyses
• Ladda ner fulltext (pdf) av High-level classification of the Fungi and a tool for evolutionary ecological analyses

New light on names and naming of dark taxa

Ryberg, Martin; Nilsson, R. Henrik

Ingår i MycoKeys, s. 31-39, 2018

• DOI för New light on names and naming of dark taxa
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Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory

Nilsson, R. Henrik; Sánchez-García, Marisol; Ryberg, Martin; Abarenkov, Kessy et al.

Ingår i MycoKeys, s. 13-24, 2017

• DOI för Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory
• Ladda ner fulltext (pdf) av Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory

Ranking higher taxa using divergence times: a case study in Dothideomycetes

Liu, Jian-Kui; Hyde, Kevin D.; Jeewon, Rajesh; Phillips, Alan J. L. et al.

Ingår i Fungal diversity, s. 75-99, 2017

• DOI för Ranking higher taxa using divergence times: a case study in Dothideomycetes

Into and out of the tropics: global diversification patterns in a hyperdiverse clade of ectomycorrhizal fungi

Looney, Brian P.; Ryberg, Martin; Hampe, Felix; Sanchez-Garcia, Marisol et al.

Ingår i Molecular Ecology, s. 630-647, 2016

• DOI för Into and out of the tropics: global diversification patterns in a hyperdiverse clade of ectomycorrhizal fungi

Phylommand - a command line software package for phylogenetics [version 1; referees: awaiting peer review]

Ryberg, Martin

Ingår i F1000 Research, 2016

• DOI för Phylommand - a command line software package for phylogenetics [version 1; referees: awaiting peer review]

Top 50 most wanted fungi

Nilsson, R. Henrik; Wurzbacher, Christian; Bahram, Mohammad; Coimbra, Victor R. M. et al.

Ingår i MycoKeys, s. 29-40, 2016

• DOI för Top 50 most wanted fungi
• Ladda ner fulltext (pdf) av Top 50 most wanted fungi

The evolution of Massarineae with Longipedicellataceae fam. nov.

Phukhamsakda, C; Hongsanan, S; Ryberg, Martin; Ariyawansa, HA et al.

Ingår i Mycosphere, s. 1713-1731, 2016

• DOI för The evolution of Massarineae with Longipedicellataceae fam. nov.
• Ladda ner fulltext (pdf) av The evolution of Massarineae with Longipedicellataceae fam. nov.

Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard - a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

Abarenkov, Kessy; Adams, Rachel I.; Irinyi, Laszlo; Agan, Ahto et al.

Ingår i MycoKeys, s. 1-15, 2016

• DOI för Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard - a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)
• Ladda ner fulltext (pdf) av Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard - a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

Dating the emergence of truffle-like fungi in Australia, by using an augmented meta-analysis

Sheedy, Elizabeth M.; Ryberg, Martin; Lebel, Teresa; May, Tom W. et al.

Ingår i Australian Systematic Botany, s. 284-302, 2016

• DOI för Dating the emergence of truffle-like fungi in Australia, by using an augmented meta-analysis

Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota)

Rosenblad, Magnus Alm; Martin, Maria P.; Tedersoo, Leho; Ryberg, Martin et al.

Ingår i MycoKeys, s. 21-33, 2016

• DOI för Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota)

Molecular operational taxonomic units as approximations of species in the light of evolutionary models and empirical data from Fungi

Ryberg, Martin

Ingår i Molecular Ecology, s. 5770-5777, 2015

• DOI för Molecular operational taxonomic units as approximations of species in the light of evolutionary models and empirical data from Fungi

Global Multilocus Sequence Type Analysis of Chlamydia trachomatis Strains from 16 Countries

Herrmann, Björn; Isaksson, Jenny; Ryberg, Martin; Tangrot, Jeanette et al.

Ingår i Journal of Clinical Microbiology, s. 2172-2179, 2015

• DOI för Global Multilocus Sequence Type Analysis of Chlamydia trachomatis Strains from 16 Countries

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

Nilsson, R. Henrik; Tedersoo, Leho; Ryberg, Martin; Kristiansson, Erik et al.

Ingår i Microbes and Environments, s. 145-150, 2015

• DOI för A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

Molecular phylogenetics and taxonomy in Psathyrellaceae (Agaricales) with focus on psathyrelloid species: introduction of three new genera and 18 new species

Orstadius, Leif; Ryberg, Martin; Larsson, Ellen

Ingår i Mycological progress, 2015

• DOI för Molecular phylogenetics and taxonomy in Psathyrellaceae (Agaricales) with focus on psathyrelloid species: introduction of three new genera and 18 new species

Global biogeography of the ectomycorrhizal/sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses

Tedersoo, Leho; Bahram, Mohammad; Ryberg, Martin; Otsing, Eveli et al.

Ingår i Molecular Ecology, s. 4168-4183, 2014

• DOI för Global biogeography of the ectomycorrhizal/sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses

Improving ITS sequence data for identification of plant pathogenic fungi

Nilsson, R. Henrik; Hyde, Kevin D.; Pawlowska, Julia; Ryberg, Martin et al.

Ingår i Fungal diversity, s. 11-19, 2014

• DOI för Improving ITS sequence data for identification of plant pathogenic fungi

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

Bengtsson-Palme, Johan; Ryberg, Martin; Hartmann, Martin; Branco, Sara et al.

Ingår i Methods in Ecology and Evolution, s. 914-919, 2013

• DOI för Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

Evolution of the toxins muscarine and psilocybin in a family of mushroom-forming fungi.

Kosentka, Pawel; Sprague, Sarah L; Ryberg, Martin; Gartz, Jochen et al.

Ingår i PLOS ONE, 2013

• DOI för Evolution of the toxins muscarine and psilocybin in a family of mushroom-forming fungi.

A systematic, morphological and ecological overview of the Clavariaceae (Agaricales).

Birkebak, Joshua M; Mayor, Jordan R; Ryberg, Martin; Matheny, P Brandon

Ingår i Mycologia, s. 896-911, 2013

• DOI för A systematic, morphological and ecological overview of the Clavariaceae (Agaricales).

The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales

Bahram, Mohammad; Kõljalg, Urmas; Courty, Pierre-Emmanuel; Diédhiou, Abdala G. et al.

Ingår i Journal of Ecology, s. 1335-1344, 2013

• DOI för The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales

Incorporating molecular data in fungal systematics: a guide for aspiring researchers

Hyde, Kevin D; Udayanga, Dhanushka; Manamgoda, Dimuthu S; Tedersoo, Leho et al.

Ingår i Current Research in Environmental & Applied Mycology, s. 1-32, 2013

• DOI för Incorporating molecular data in fungal systematics: a guide for aspiring researchers

Asynchronous origins of ectomycorrhizal clades of Agaricales.

Ryberg, Martin; Matheny, P Brandon

Ingår i Proceedings of the Royal Society of London. Biological Sciences, s. 2003-11, 2012

• DOI för Asynchronous origins of ectomycorrhizal clades of Agaricales.

Towards global patterns in the diversity and community structure of ectomycorrhizal fungi.

Tedersoo, Leho; Bahram, Mohammad; Toots, Märt; Diédhiou, Abdala G et al.

Ingår i Molecular Ecology, s. 4160-70, 2012

• DOI för Towards global patterns in the diversity and community structure of ectomycorrhizal fungi.

Scaling up: examining the macroecology of ectomycorrhizal fungi.

Kennedy, Peter G; Matheny, P B; Ryberg, Martin; Henkel, Terry W et al.

Ingår i Molecular Ecology, s. 4151-4, 2012

• DOI för Scaling up: examining the macroecology of ectomycorrhizal fungi.

DivBayes and SubT: exploring species diversification using Bayesian statistics.

Ryberg, Martin; Nilsson, R Henrik; Matheny, P Brandon

Ingår i Bioinformatics, s. 2439-40, 2011

• DOI för DivBayes and SubT: exploring species diversification using Bayesian statistics.

Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi.

Tedersoo, Leho; Abarenkov, Kessy; Nilsson, R Henrik; Schüssler, Arthur et al.

Ingår i PloS one, 2011

• DOI för Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi.

Rethinking taxon sampling in the light of environmental sequencing

Henrik Nilsson, R.; Ryberg, Martin; Sjökvist, Elisabet; Abarenkov, Kessy

Ingår i Cladistics, s. 197-203, 2011

• DOI för Rethinking taxon sampling in the light of environmental sequencing

Weak habitat specificity in ectomycorrhizal communities associated with Salix herbacea and Salix polaris in alpine tundra.

Ryberg, Martin; Andreasen, Mathias; Björk, Robert G

Ingår i Mycorrhiza, s. 289-96, 2011

• DOI för Weak habitat specificity in ectomycorrhizal communities associated with Salix herbacea and Salix polaris in alpine tundra.

Dealing with incomplete taxon sampling and diversification of a large clade of mushroom-forming fungi.

Ryberg, Martin; Matheny, Patrick Brandon

Ingår i Evolution, s. 1862-78, 2011

• DOI för Dealing with incomplete taxon sampling and diversification of a large clade of mushroom-forming fungi.

Both ectomycorrhizal tree diversity and soil characteristics structure ectomycorrhizal mushroom communities, and production in Sudanian savanna woodlands

Furneaux, Brendan R.; Houdanon, Roël; Aïgnon, Hyppolite; Boni, Souleymane et al.

Comparison of wild mushroom use by ethnic groups surrounding the Upper Ouémé Reserve Forest in Benin, West Africa.

Furneaux, Brendan R.; Veldman, Sarina; Riggi, Laura; Boni, Souleymane et al.

Long- and short-read metabarcoding technologies reveal similar spatio-temporal structures in fungal communities

Furneaux, Brendan R.; Bahram, Mohammad; Rosling, Anna; Yorou, Nourou S. et al.

Dynamics of transposon activity and genomic rearrangements in natural and cultured isolates of the fairy-ring fungus Marasmius oreades

Hiltunen, Markus; Ament-Velásquez, Sandra Lorena; Ryberg, Martin; Johannesson, Hanna

No inheritance of vegetative mutations into sexual spores of the fungus Marasmius oreades

Hiltunen, Markus; Ryberg, Martin; Johannesson, Hanna

Another dark taxon comes to light: Eludereomycetes, class nov. (Pucciniomycotina, Basidiomycota), and its first known living representative, Eluderea minerophilus, gen. et sp. nov.

Kluting, Kerri L.; Sánchez-García, Marisol; Tuovinen, Veera; Strid, Ylva et al.

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences.

Nilsson, R. Henrik; Tedersoo, Leho; Abarenkov, Kessy; Ryberg, Martin et al.

2012

• DOI för Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences.