Orcun Göksel

FGGP: Fixed-Rate Gradient-First Gradual Pruning

Zhu, Lingkai; Bezek, Can Deniz; Göksel, Orcun

Ingår i Image Analysis, s. 3-15, 2025

• DOI för FGGP: Fixed-Rate Gradient-First Gradual Pruning

Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks

Laguna, Sonia; Zhang, Lin; Bezek, Can Deniz; Farkas, Monika et al.

Ingår i International Journal of Computer Assisted Radiology and Surgery, s. 1541-1549, 2025

• DOI för Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks
• Ladda ner fulltext (pdf) av Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks

Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation

Bezek, Can Deniz; Haas, Maxim; Rau, Richard; Göksel, Orcun

Ingår i IEEE Transactions on Medical Imaging, s. 3600-3609, 2025

• DOI för Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation

Joint semi-supervised and contrastive learning enables domain generalization and multi-domain segmentation

Gomariz, Alvaro; Kikuchi, Yusuke; Yvonna, Yun; Albrecht, Thomas et al.

Ingår i Medical Image Analysis, 2025

• DOI för Joint semi-supervised and contrastive learning enables domain generalization and multi-domain segmentation

Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains

Thandiackal, Kevin; Piccinelli, Luigi; Gupta, Rajarsi; Pati, Pushpak et al.

Ingår i IEEE Transactions on Medical Imaging, s. 2599-2609, 2024

• DOI för Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains
• Ladda ner fulltext (pdf) av Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains

Generative feature-driven image replay for continual learning

Thandiackal, Kevin; Portenier, Tiziano; Giovannini, Andrea; Gabrani, Maria et al.

Ingår i Image and Vision Computing, 2024

• DOI för Generative feature-driven image replay for continual learning

Generative appearance replay for continual unsupervised domain adaptation

Chen, Boqi; Thandiackal, Kevin; Pati, Pushpak; Göksel, Orcun

Ingår i Medical Image Analysis, s. 102924-102924, 2023

• DOI för Generative appearance replay for continual unsupervised domain adaptation
• Ladda ner fulltext (pdf) av Generative appearance replay for continual unsupervised domain adaptation

Image-based metrics in ultrasound for estimation of global speed of sound

Denkin, Roman; Göksel, Orcun

Ingår i Ultrasonics, 2026

• DOI för Image-based metrics in ultrasound for estimation of global speed of sound
• Ladda ner fulltext (pdf) av Image-based metrics in ultrasound for estimation of global speed of sound

Breast Density Assessment via Quantitative Sound-Speed Measurement Using Conventional Ultrasound Transducers

Bezek, Can Deniz; Farkas, Monika; Schweizer, Dieter; Kubik-Huch, Rahel A. et al.

Ingår i European Radiology, s. 1490-1501, 2025

• DOI för Breast Density Assessment via Quantitative Sound-Speed Measurement Using Conventional Ultrasound Transducers
• Ladda ner fulltext (pdf) av Breast Density Assessment via Quantitative Sound-Speed Measurement Using Conventional Ultrasound Transducers

Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer

Schweizer, Dieter; Farkas, Monika; Bezek, Can Deniz; Potempa, Anna et al.

Ingår i Ultrasound in Medicine and Biology, s. 1831-1839, 2025

• DOI för Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer
• Ladda ner fulltext (pdf) av Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer

Sound Speed Approximation Using B-mode Image Alignment with Steered Focused Transmits

Bezek, Can Deniz; Koudelka, Paul; Denkin, Roman; Göksel, Orcun

Ingår i 2025 IEEE International Ultrasonics Symposium (IUS), s. 1-4, 2025

• DOI för Sound Speed Approximation Using B-mode Image Alignment with Steered Focused Transmits

FGGP: Fixed-Rate Gradient-First Gradual Pruning

Zhu, Lingkai; Bezek, Can Deniz; Göksel, Orcun

Ingår i Image Analysis, s. 3-15, 2025

• DOI för FGGP: Fixed-Rate Gradient-First Gradual Pruning

Image-based metrics in ultrasound for estimation of global speed of sound

Denkin, Roman; Göksel, Orcun

Ingår i Ultrasonics, 2026

• DOI för Image-based metrics in ultrasound for estimation of global speed of sound
• Ladda ner fulltext (pdf) av Image-based metrics in ultrasound for estimation of global speed of sound

Breast Density Assessment via Quantitative Sound-Speed Measurement Using Conventional Ultrasound Transducers

Bezek, Can Deniz; Farkas, Monika; Schweizer, Dieter; Kubik-Huch, Rahel A. et al.

Ingår i European Radiology, s. 1490-1501, 2025

• DOI för Breast Density Assessment via Quantitative Sound-Speed Measurement Using Conventional Ultrasound Transducers
• Ladda ner fulltext (pdf) av Breast Density Assessment via Quantitative Sound-Speed Measurement Using Conventional Ultrasound Transducers

Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer

Schweizer, Dieter; Farkas, Monika; Bezek, Can Deniz; Potempa, Anna et al.

Ingår i Ultrasound in Medicine and Biology, s. 1831-1839, 2025

• DOI för Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer
• Ladda ner fulltext (pdf) av Pulse-Echo Imaging of Breast Speed of Sound as a Potential Biomarker for Breast Cancer

Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks

Laguna, Sonia; Zhang, Lin; Bezek, Can Deniz; Farkas, Monika et al.

Ingår i International Journal of Computer Assisted Radiology and Surgery, s. 1541-1549, 2025

• DOI för Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks
• Ladda ner fulltext (pdf) av Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks

Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation

Bezek, Can Deniz; Haas, Maxim; Rau, Richard; Göksel, Orcun

Ingår i IEEE Transactions on Medical Imaging, s. 3600-3609, 2025

• DOI för Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation

Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation

Bezek, Can Deniz; Haas, Maxim; Rau, Richard; Göksel, Orcun

Ingår i IEEE Transactions on Medical Imaging, s. 3600-3609, 2025

• DOI för Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation

Joint semi-supervised and contrastive learning enables domain generalization and multi-domain segmentation

Gomariz, Alvaro; Kikuchi, Yusuke; Yvonna, Yun; Albrecht, Thomas et al.

Ingår i Medical Image Analysis, 2025

• DOI för Joint semi-supervised and contrastive learning enables domain generalization and multi-domain segmentation

Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains

Thandiackal, Kevin; Piccinelli, Luigi; Gupta, Rajarsi; Pati, Pushpak et al.

Ingår i IEEE Transactions on Medical Imaging, s. 2599-2609, 2024

• DOI för Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains
• Ladda ner fulltext (pdf) av Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains

Generative feature-driven image replay for continual learning

Thandiackal, Kevin; Portenier, Tiziano; Giovannini, Andrea; Gabrani, Maria et al.

Ingår i Image and Vision Computing, 2024

• DOI för Generative feature-driven image replay for continual learning

HDRfeat: A feature-rich network for high dynamic range image reconstruction

Zhu, Lingkai; Zhou, Fei; Liu, Bozhi; Göksel, Orcun

Ingår i Pattern Recognition Letters, s. 148-154, 2024

• DOI för HDRfeat: A feature-rich network for high dynamic range image reconstruction

Calpain Inhibition Protects against UVB-Induced Degradation of Dermal-Epidermal Junction-Associated Proteins

Doleckova, Iva; Vidovic, Tinka; Jandova, Lenka; Gretzmeier, Christine et al.

Ingår i Journal of Investigative Dermatology, s. 2103-210700, 2024

• DOI för Calpain Inhibition Protects against UVB-Induced Degradation of Dermal-Epidermal Junction-Associated Proteins
• Ladda ner fulltext (pdf) av Calpain Inhibition Protects against UVB-Induced Degradation of Dermal-Epidermal Junction-Associated Proteins

Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans

Teuscher, Alina C.; Statzer, Cyril; Goyala, Anita; Domenig, Seraina A. et al.

Ingår i Nature Communications, 2024

• DOI för Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans
• Ladda ner fulltext (pdf) av Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans

Robust Imaging of Speed-of-Sound Using Virtual Source Transmission

Schweizer, Dieter; Rau, Richard; Bezek, Can Deniz; Kubik-Huch, Rahel A. et al.

Ingår i IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, s. 1308-1318, 2023

• DOI för Robust Imaging of Speed-of-Sound Using Virtual Source Transmission

Analytical Estimation of Beamforming Speed-of-Sound Using Transmission Geometry

Bezek, Can Deniz; Göksel, Orcun

Ingår i Ultrasonics, 2023

• DOI för Analytical Estimation of Beamforming Speed-of-Sound Using Transmission Geometry
• Ladda ner fulltext (pdf) av Analytical Estimation of Beamforming Speed-of-Sound Using Transmission Geometry

Weakly supervised joint whole-slide segmentation and classification in prostate cancer

Pati, Pushpak; Jaume, Guillaume; Ayadi, Zeineb; Thandiackal, Kevin et al.

Ingår i Medical Image Analysis, 2023

• DOI för Weakly supervised joint whole-slide segmentation and classification in prostate cancer

Generative appearance replay for continual unsupervised domain adaptation

Chen, Boqi; Thandiackal, Kevin; Pati, Pushpak; Göksel, Orcun

Ingår i Medical Image Analysis, s. 102924-102924, 2023

• DOI för Generative appearance replay for continual unsupervised domain adaptation
• Ladda ner fulltext (pdf) av Generative appearance replay for continual unsupervised domain adaptation

Computational analysis of subscapularis tears and pectoralis major transfers on muscular activity

Pean, Fabien; Favre, Philippe; Göksel, Orcun

Ingår i Clinical Biomechanics, 2022

• DOI för Computational analysis of subscapularis tears and pectoralis major transfers on muscular activity
• Ladda ner fulltext (pdf) av Computational analysis of subscapularis tears and pectoralis major transfers on muscular activity

Spectral Ultrasound Imaging of Speed-of-Sound and Attenuation Using an Acoustic Mirror

Chintada, Bhaskara Rao; Rau, Richard; Göksel, Orcun

Ingår i Frontiers in Physics, 2022

• DOI för Spectral Ultrasound Imaging of Speed-of-Sound and Attenuation Using an Acoustic Mirror
• Ladda ner fulltext (pdf) av Spectral Ultrasound Imaging of Speed-of-Sound and Attenuation Using an Acoustic Mirror

Hierarchical graph representations in digital pathology

Pati, Pushpak; Jaume, Guillaume; Foncubierta-Rodriguez, Antonio; Feroce, Florinda et al.

Ingår i Medical Image Analysis, 2022

• DOI för Hierarchical graph representations in digital pathology
• Ladda ner fulltext (pdf) av Hierarchical graph representations in digital pathology

Probabilistic spatial analysis in quantitative microscopy with uncertainty-aware cell detection using deep Bayesian regression

Gomariz, Alvaro; Portenier, Tiziano; Nombela-Arrieta, Cesar; Göksel, Orcun

Ingår i Science Advances, 2022

• DOI för Probabilistic spatial analysis in quantitative microscopy with uncertainty-aware cell detection using deep Bayesian regression

Modality attention and sampling enables deep learning with heterogeneous marker combinations in fluorescence microscopy

Gomariz, Alvaro; Portenier, Tiziano; Helbling, Patrick M.; Isringhausen, Stephan et al.

Ingår i Nature Machine Intelligence, s. 799-811, 2021

• DOI för Modality attention and sampling enables deep learning with heterogeneous marker combinations in fluorescence microscopy

Learning ultrasound rendering from cross-sectional model slices for simulated training

Zhang, Lin; Portenier, Tiziano; Göksel, Orcun

Ingår i International Journal of Computer Assisted Radiology and Surgery, s. 721-730, 2021

• DOI för Learning ultrasound rendering from cross-sectional model slices for simulated training
• Ladda ner fulltext (pdf) av Learning ultrasound rendering from cross-sectional model slices for simulated training

Phase-Aberration Correction in Shear-Wave Elastography Imaging Using Local Speed-of-Sound Adaptive Beamforming

Chintada, Bhaskara R.; Rau, Richard; Goksel, Orcun

Ingår i Frontiers in Physics, 2021

• DOI för Phase-Aberration Correction in Shear-Wave Elastography Imaging Using Local Speed-of-Sound Adaptive Beamforming
• Ladda ner fulltext (pdf) av Phase-Aberration Correction in Shear-Wave Elastography Imaging Using Local Speed-of-Sound Adaptive Beamforming

IJCARS-IPCAI 2021 Special Issue: Information Processing for Computer-Assisted Interventions, 12th International Conference 2021-Part 1

Franz, Alfred; Göksel, Orcun

Ingår i International Journal of Computer Assisted Radiology and Surgery, s. 707-708, 2021

• DOI för IJCARS-IPCAI 2021 Special Issue: Information Processing for Computer-Assisted Interventions, 12th International Conference 2021-Part 1
• Ladda ner fulltext (pdf) av IJCARS-IPCAI 2021 Special Issue: Information Processing for Computer-Assisted Interventions, 12th International Conference 2021-Part 1

Sound Speed Approximation Using B-mode Image Alignment with Steered Focused Transmits

Bezek, Can Deniz; Koudelka, Paul; Denkin, Roman; Göksel, Orcun

Ingår i 2025 IEEE International Ultrasonics Symposium (IUS), s. 1-4, 2025

• DOI för Sound Speed Approximation Using B-mode Image Alignment with Steered Focused Transmits

FGGP: Fixed-Rate Gradient-First Gradual Pruning

Zhu, Lingkai; Bezek, Can Deniz; Göksel, Orcun

Ingår i Image Analysis, s. 3-15, 2025

• DOI för FGGP: Fixed-Rate Gradient-First Gradual Pruning

Towards speed-of-sound imaging with conventional ultrasound transducers using laser diode photoacoustic

Bezek, Can Deniz; Moradi, Hamid; Rohling, Robert; Salcudean, Septimiu et al.

Ingår i MEDICAL IMAGING 2025, 2025

• DOI för Towards speed-of-sound imaging with conventional ultrasound transducers using laser diode photoacoustic

Windowed Sound-Speed Prediction by Extending Beamforming-Based Global Estimators

Bezek, Can Deniz; Göksel, Orcun

Ingår i 2025 IEEE International Ultrasonics Symposium (IUS), s. 1-4, 2025

• DOI för Windowed Sound-Speed Prediction by Extending Beamforming-Based Global Estimators

Global Tissue Speed-of-Sound via Comparative and Absolute Image Metrics in Ultrasound

Denkin, Roman; Göksel, Orcun

2025

Image-based tissue characterization with sound speed

Denkin, Roman; Göksel, Orcun

2025

Detection of Extremely Sparse Key Instances in Whole Slide Cytology Images via Self-supervised One-class Representation Learning

Chatterjee, Swarnadip; Göksel, Orcun; Sladoje, Nataša; Lindblad, Joakim

Ingår i Pattern Recognition, s. 408-421, 2024

• DOI för Detection of Extremely Sparse Key Instances in Whole Slide Cytology Images via Self-supervised One-class Representation Learning

Model-Based Speed-of-Sound Reconstruction via Interpretable Pruned Priors

Bezek, Can Deniz; Göksel, Orcun

Ingår i 2024 IEEE Ultrasonics, Ferroelectrics, and Frequency Control Joint Symposium (UFFC-JS), 2024

• DOI för Model-Based Speed-of-Sound Reconstruction via Interpretable Pruned Priors

Assessing Image Quality Metrics for Global Sound-Speed Estimation in Ultrasound

Denkin, Roman; Göksel, Orcun

2024

Comparative Study of Image Quality Metrics for Global Sound-Speed Estimation

Denkin, Roman; Göksel, Orcun

2024

Detection of Extremely Sparse Key Instances in Whole Slide Cytology Images via Self-supervised One-class Representation Learning

Chatterjee, Swarnadip; Göksel, Orcun; Sladoje, Nataša; Lindblad, Joakim

Ingår i Detection of Extremely Sparse Key Instances in Whole Slide Cytology Images via Self-supervised One-class Representation Learning, s. 408-421, 2024

• DOI för Detection of Extremely Sparse Key Instances in Whole Slide Cytology Images via Self-supervised One-class Representation Learning

Speed-of-Sound as a Novel Tissue Characterization Method

Bezek, Can Deniz; Göksel, Orcun

2024

Speed-of-Sound as a Novel Quantitative Imaging and Characterization Method

Bezek, Can Deniz; Göksel, Orcun

2024

Model-based Deep Learning of Ultrasound Beamforming

Bezek, Can Deniz; Zhu, Lingkai; Göksel, Orcun

2023

Speed-of-sound as a Novel Ultrasound Imaging Biomarker for Breast Cancer and Density

Bezek, Can Deniz; Schweizer, Dieter; Kubik-Huch, Rahel A.; Göksel, Orcun

2023

Motion Sensitivity of Transmit Sequences for Pulse-Echo Mapping of Sound Speed Based on Apparent Speckle Shifts

Schweizer, Dieter; Bezek, Can Deniz; Farkas, Monika; Göksel, Orcun

2023

Pulse-Echo Speed-of-Sound as Imaging Biomarker for Breast Density: Virtual Source Acquisitions for In-Vivo Application

Bezek, Can Deniz; Göksel, Orcun

2023

Sound-Speed Reconstruction with Learned Kernels Based on a Convolutional Formulation of Sound-Speed and Speckle-Shift Relation

Bezek, Can Deniz; Göksel, Orcun

2023

Global Speed-of-Sound Prediction Using Transmission Geometry

Bezek, Can Deniz; Bilgin, Mert; Zhang, Lin; Göksel, Orcun

Ingår i Proceedings of the 2022 IEEE International Ultrasonics Symposium (IUS), s. 1-4, 2022

• DOI för Global Speed-of-Sound Prediction Using Transmission Geometry

Mean Speed-of-Sound Estimation Using Geometric Disparities

Bezek, Can Deniz; Bilgin, Mert; Zhang, Lin; Göksel, Orcun

2022

A unified deep learning approach for OCT segmentation from different devices and retinal diseases

Gomariz, Alvaro; Lu, Huanxiang; Albrecht, Thomas; Maunz, Andreas et al.

Ingår i Investigative Ophthalmology & Visual Science, s. 2053, 2022

Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images

Thandiackal, Kevin; Chen, Boqi; Pati, Pushpak; Jaume, Guillaume et al.

Ingår i COMPUTER VISION, ECCV 2022, PT XXI, s. 699-715, 2022

• DOI för Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images

Unsupervised Domain Adaptation with Contrastive Learning for OCT Segmentation

Gomariz, Alvaro; Lu, Huanxiang; Li, Yun Yvonna; Albrecht, Thomas et al.

Ingår i Medical Image Computing and Computer Assisted Intervention, MICCAI 2022, pt viii, s. 351-361, 2022

• DOI för Unsupervised Domain Adaptation with Contrastive Learning for OCT Segmentation

Time Of Arrival Delineation In Echo Traces For Reflection Ultrasound Tomography

Chintada, Bhaskara R; Rau, Richard; Göksel, Orcun

s. 1342-1345, 2021

• DOI för Time Of Arrival Delineation In Echo Traces For Reflection Ultrasound Tomography

Estimating Mean Speed-of-Sound from Sequence-Dependent Geometric Disparities

Augustin, Xenia; Zhang, Lin; Goksel, Orcun

2021

Learning Whole-Slide Segmentation from Inexact and Incomplete Labels Using Tissue Graphs

Anklin, Valentin; Pati, Pushpak; Jaume, Guillaume; Bozorgtabar, Behzad et al.

Ingår i Medical Image Computing and Computer Assisted Intervention, s. 636-646, 2021

• DOI för Learning Whole-Slide Segmentation from Inexact and Incomplete Labels Using Tissue Graphs

Content-Preserving Unpaired Translation from Simulated to Realistic Ultrasound Images

Tomar, Devavrat; Zhang, Lin; Portenier, Tiziano; Goksel, Orcun

Ingår i Medical Image Computing and Computer Assisted Intervention, s. 659-669, 2021

• DOI för Content-Preserving Unpaired Translation from Simulated to Realistic Ultrasound Images

Quantifying Explainers of Graph Neural Networks in Computational Pathology

Jaume, Guillaume; Pati, Pushpak; Bozorgtabar, Behzad; Foncubierta, Antonio et al.

Ingår i 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2021, s. 8102-8112, 2021

• DOI för Quantifying Explainers of Graph Neural Networks in Computational Pathology

Utilizing Uncertainty Estimation in Deep Learning Segmentation of Fluorescence Microscopy Images with Missing Markers

Gomariz, Alvaro; Egli, Raphael; Portenier, Tiziano; Nombela-Arrieta, Cesar et al.

2021

• DOI för Utilizing Uncertainty Estimation in Deep Learning Segmentation of Fluorescence Microscopy Images with Missing Markers

Estimating Mean Speed-of-Sound from Sequence-Dependent Geometric Disparities

Augustin, Xenia; Zhang, Lin; Göksel, Orcun

Ingår i INTERNATIONAL ULTRASONICS SYMPOSIUM (IEEE IUS 2021), 2021

• DOI för Estimating Mean Speed-of-Sound from Sequence-Dependent Geometric Disparities

Probabilistic Spatial Analysis in Quantitative Microscopy with Uncertainty-Aware Cell Detection using Deep Bayesian Regression of Density Maps

Gomariz, Alvaro; Tiziano, Portenier; Nombela-Arrieta, César; Göksel, Orcun

Match What Matters: Generative Implicit Feature Replay for Continual Learning

Thandiackal, Kevin; Portenier, Tiziano; Giovannini, Andrea; Gabrani, Maria et al.

Unpaired Translation from Semantic Label Maps to Images by Leveraging Domain-Specific Simulations

Zhang, Lin; Portenier, Tiziano; Göksel, Orcun

• DOI för Unpaired Translation from Semantic Label Maps to Images by Leveraging Domain-Specific Simulations

DenOiS: Dual-Domain Denoising of Observation and Solution in Ultrasound Image Reconstruction

Bezek, Can Deniz; Göksel, Orcun

• DOI för DenOiS: Dual-Domain Denoising of Observation and Solution in Ultrasound Image Reconstruction

Pulse-Echo Ultrasound Methods for Speed-of-Sound Estimation: A Review

Bezek, Can Deniz; Göksel, Orcun

Needle in a Haystack: One-Class Representation Learning for Detecting Rare Malignant Cells in Computational Cytology

Chatterjee, Swarnadip; Basic, Vladimir; Capitanio, Arrigo; Göksel, Orcun et al.