Cecilia Lindskog

Vascular leakage in non-small cell lung cancer is associated with immune evasion and poor response to immunotherapy

Nwadozi, Emmanuel; Strell, Carina; Nordling, Sofia; Lindberg, Amanda et al.

Ingår i Cancer Letters, 2026

• DOI för Vascular leakage in non-small cell lung cancer is associated with immune evasion and poor response to immunotherapy
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Dissecting autonomous enzymatic variability in single cells

Gnann, Christian; Sigaeva, Alina; Le, Trang; Cesnik, Anthony J. et al.

Ingår i Nature Communications, 2026

• DOI för Dissecting autonomous enzymatic variability in single cells
• Ladda ner fulltext (pdf) av Dissecting autonomous enzymatic variability in single cells

The 2025 Report on the Human Proteome from the HUPO Human Proteome Project

Deutsch, Eric W.; Lindskog, Cecilia; Budnik, Bogdan; Ctortecka, Claudia et al.

Ingår i Journal of Proteome Research, s. 539-555, 2026

• DOI för The 2025 Report on the Human Proteome from the HUPO Human Proteome Project

Testicular organoids formation from leukaemia-infiltrated prepubertal testicular tissue: implications for fertility preservation

Cui, Yanhua; Lohi, Jouko; Lindskog, Cecilia; Jahnukainen, Kirsi et al.

Ingår i Leukemia, s. 1044-1048, 2026

• DOI för Testicular organoids formation from leukaemia-infiltrated prepubertal testicular tissue: implications for fertility preservation
• Ladda ner fulltext (pdf) av Testicular organoids formation from leukaemia-infiltrated prepubertal testicular tissue: implications for fertility preservation

A high-resolution spatial map of cilia-associated proteins in the human fallopian tube

Hikmet, Feria; Digre, Andreas; Hansen, Jan Niklas; Schon, Samantha B. et al.

Ingår i Nature Communications, 2026

• DOI för A high-resolution spatial map of cilia-associated proteins in the human fallopian tube
• Ladda ner fulltext (pdf) av A high-resolution spatial map of cilia-associated proteins in the human fallopian tube

Vascular leakage in non-small cell lung cancer is associated with immune evasion and poor response to immunotherapy

Nwadozi, Emmanuel; Strell, Carina; Nordling, Sofia; Lindberg, Amanda et al.

Ingår i Cancer Letters, 2026

• DOI för Vascular leakage in non-small cell lung cancer is associated with immune evasion and poor response to immunotherapy
• Ladda ner fulltext (pdf) av Vascular leakage in non-small cell lung cancer is associated with immune evasion and poor response to immunotherapy

Dissecting autonomous enzymatic variability in single cells

Gnann, Christian; Sigaeva, Alina; Le, Trang; Cesnik, Anthony J. et al.

Ingår i Nature Communications, 2026

• DOI för Dissecting autonomous enzymatic variability in single cells
• Ladda ner fulltext (pdf) av Dissecting autonomous enzymatic variability in single cells

The 2025 Report on the Human Proteome from the HUPO Human Proteome Project

Deutsch, Eric W.; Lindskog, Cecilia; Budnik, Bogdan; Ctortecka, Claudia et al.

Ingår i Journal of Proteome Research, s. 539-555, 2026

• DOI för The 2025 Report on the Human Proteome from the HUPO Human Proteome Project

Testicular organoids formation from leukaemia-infiltrated prepubertal testicular tissue: implications for fertility preservation

Cui, Yanhua; Lohi, Jouko; Lindskog, Cecilia; Jahnukainen, Kirsi et al.

Ingår i Leukemia, s. 1044-1048, 2026

• DOI för Testicular organoids formation from leukaemia-infiltrated prepubertal testicular tissue: implications for fertility preservation
• Ladda ner fulltext (pdf) av Testicular organoids formation from leukaemia-infiltrated prepubertal testicular tissue: implications for fertility preservation

A high-resolution spatial map of cilia-associated proteins in the human fallopian tube

Hikmet, Feria; Digre, Andreas; Hansen, Jan Niklas; Schon, Samantha B. et al.

Ingår i Nature Communications, 2026

• DOI för A high-resolution spatial map of cilia-associated proteins in the human fallopian tube
• Ladda ner fulltext (pdf) av A high-resolution spatial map of cilia-associated proteins in the human fallopian tube

Mixed gangliocytoma-pituitary neuroendocrine tumour: clinical, immunohistochemical, and molecular genetic profiles in a series of four patients

Dalakas, Konstantinos; Edén Engström, Britt; Tebani, Abdellah; Bontell, Thomas Olsson et al.

Ingår i Acta neuropathologica communications, 2026

• DOI för Mixed gangliocytoma-pituitary neuroendocrine tumour: clinical, immunohistochemical, and molecular genetic profiles in a series of four patients
• Ladda ner fulltext (pdf) av Mixed gangliocytoma-pituitary neuroendocrine tumour: clinical, immunohistochemical, and molecular genetic profiles in a series of four patients

SHP2 regulates VEGFR2 Y1175/PLC1 signaling to impair tumor endothelial barrier stability

Kremmyda, Polina; Owad, Sara; Pal, Sagnik; Wildheim, Elvira et al.

Ingår i iScience, 2026

• DOI för SHP2 regulates VEGFR2 Y1175/PLC1 signaling to impair tumor endothelial barrier stability
• Ladda ner fulltext (pdf) av SHP2 regulates VEGFR2 Y1175/PLC1 signaling to impair tumor endothelial barrier stability

A High-Resolution Subcellular Map of Proteins in Cells with Motile Cilia

Bertilsson, Filippa; Hikmet Noraddin, Feria; Hansen, Jan N.; Uhlén, Mathias et al.

Ingår i Journal of Proteome Research, s. 231-243, 2026

• DOI för A High-Resolution Subcellular Map of Proteins in Cells with Motile Cilia
• Ladda ner fulltext (pdf) av A High-Resolution Subcellular Map of Proteins in Cells with Motile Cilia

Intrinsic heterogeneity of primary cilia revealed through spatial proteomics

Hansen, Jan N.; Sun, Huangqingbo; Kahnert, Konstantin; Westenius, Eini et al.

Ingår i Cell, s. 6804-68240000000000000000, 2025

• DOI för Intrinsic heterogeneity of primary cilia revealed through spatial proteomics
• Ladda ner fulltext (pdf) av Intrinsic heterogeneity of primary cilia revealed through spatial proteomics

In situ detection of PD1–PD-L1 interactions as a functional predictor for response to immune checkpoint inhibition in NSCLC

Lindberg, Amanda; Muhl, Lars; Yu, Hui; Hellberg, Louise et al.

Ingår i Journal of Thoracic Oncology, s. 625-640, 2025

• DOI för In situ detection of PD1–PD-L1 interactions as a functional predictor for response to immune checkpoint inhibition in NSCLC
• Ladda ner fulltext (pdf) av In situ detection of PD1–PD-L1 interactions as a functional predictor for response to immune checkpoint inhibition in NSCLC

Flexible and robust cell-type annotation for highly multiplexed tissue images

Sun, Huangqingbo; Yu, Shiqiu; Casals, Anna Martinez; Bäckström, Anna et al.

Ingår i Cell Systems, 2025

• DOI för Flexible and robust cell-type annotation for highly multiplexed tissue images
• Ladda ner fulltext (pdf) av Flexible and robust cell-type annotation for highly multiplexed tissue images

A human pan-disease blood atlas of the circulating proteome

Álvez, María Bueno; Bergström, Sofia; Kenrick, Josefin; Johansson, Emil et al.

Ingår i Science, 2025

• DOI för A human pan-disease blood atlas of the circulating proteome

Immunohistochemistry guided segmentation of benign epithelial cells, in situ lesions, and invasive epithelial cells in breast cancer slides

Høibø, Maren; Pedersen, André; Dale, Vibeke Grotnes; Berget, Sissel Marie et al.

Ingår i PLOS ONE, 2025

• DOI för Immunohistochemistry guided segmentation of benign epithelial cells, in situ lesions, and invasive epithelial cells in breast cancer slides
• Ladda ner fulltext (pdf) av Immunohistochemistry guided segmentation of benign epithelial cells, in situ lesions, and invasive epithelial cells in breast cancer slides

A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics

Shi, Mengnan; Méar, Loren; Karlsson, Max; Alvez, Maria Bueno et al.

Ingår i Genome Biology, 2025

• DOI för A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics
• Ladda ner fulltext (pdf) av A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics

Chaperone-mediated autophagy regulates the metastatic state of mesenchymal tumors

Zhou, Xun; Berenger, Eva; Shi, Yong; Shirokova, Vera et al.

Ingår i EMBO Molecular Medicine, s. 747-774, 2025

• DOI för Chaperone-mediated autophagy regulates the metastatic state of mesenchymal tumors
• Ladda ner fulltext (pdf) av Chaperone-mediated autophagy regulates the metastatic state of mesenchymal tumors

Haploinsufficient phenotypes promote selection of PTEN and ARID1A-deficient clones in human colon

Skoufou-Papoutsaki, Nefeli; Adler, Sam; Mehmed, Shenay; Tume, Claire et al.

Ingår i EMBO Reports, s. 1269-1289, 2025

• DOI för Haploinsufficient phenotypes promote selection of PTEN and ARID1A-deficient clones in human colon
• Ladda ner fulltext (pdf) av Haploinsufficient phenotypes promote selection of PTEN and ARID1A-deficient clones in human colon

CD93 maintains endothelial barrier function and limits metastatic dissemination

Vemuri, Kalyani; de Alves Pereira, Beatriz; Fuenzalida, Patricia; Subashi, Yelin et al.

Ingår i JCI Insight, 2024

• DOI för CD93 maintains endothelial barrier function and limits metastatic dissemination
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Stem cell-associated transcription factors in non-functioning pituitary neuroendocrine tumours

Øystese, Kristin Astrid; Olarescu, Nicoleta Cristina; Lindskog, Cecilia; Xheka, Fabjola et al.

Ingår i Free Neuropathology, s. 1-14, 2024

• DOI för Stem cell-associated transcription factors in non-functioning pituitary neuroendocrine tumours
• Ladda ner fulltext (pdf) av Stem cell-associated transcription factors in non-functioning pituitary neuroendocrine tumours

Exposure to the phthalate metabolite MEHP impacts survival and growth of human ovarian follicles in vitro

Panagiotou, Eleftheria Maria; Damdimopoulos, Anastasios; Li, Tianyi; Moussaud-Lamodière, Elisabeth et al.

Ingår i Toxicology, 2024

• DOI för Exposure to the phthalate metabolite MEHP impacts survival and growth of human ovarian follicles in vitro
• Ladda ner fulltext (pdf) av Exposure to the phthalate metabolite MEHP impacts survival and growth of human ovarian follicles in vitro

Transcriptomics and Spatial Proteomics for Discovery and Validation of Missing Proteins in the Human Ovary

Méar, Loren; Hao, Xia; Hikmet Noraddin, Feria; Damdimopoulou, Pauliina et al.

Ingår i Journal of Proteome Research, s. 238-248, 2024

• DOI för Transcriptomics and Spatial Proteomics for Discovery and Validation of Missing Proteins in the Human Ovary
• Ladda ner fulltext (pdf) av Transcriptomics and Spatial Proteomics for Discovery and Validation of Missing Proteins in the Human Ovary

In-depth analysis of transcriptomes in ovarian cortical follicles from children and adults reveals interfollicular heterogeneity

Rooda, Ilmatar; Hassan, Jasmin; Hao, Jie; Wagner, Magdalena et al.

Ingår i Nature Communications, 2024

• DOI för In-depth analysis of transcriptomes in ovarian cortical follicles from children and adults reveals interfollicular heterogeneity
• Ladda ner fulltext (pdf) av In-depth analysis of transcriptomes in ovarian cortical follicles from children and adults reveals interfollicular heterogeneity

Effects of chemical in vitro activation versus fragmentation on human ovarian tissue and follicle growth in culture

Hao, Jie; Li, Tianyi; Heinzelmann, Manuel; Moussaud-Lamodiere, Elisabeth et al.

Ingår i Human Reproduction Open, 2024

• DOI för Effects of chemical in vitro activation versus fragmentation on human ovarian tissue and follicle growth in culture
• Ladda ner fulltext (pdf) av Effects of chemical in vitro activation versus fragmentation on human ovarian tissue and follicle growth in culture

Persistent organic pollutants dysregulate energy homeostasis in human ovaries in vitro

Li, Tianyi; Duque Björvang, Richelle; Hao, Jie; Di Nisio, Valentina et al.

Ingår i Environment International, 2024

• DOI för Persistent organic pollutants dysregulate energy homeostasis in human ovaries in vitro
• Ladda ner fulltext (pdf) av Persistent organic pollutants dysregulate energy homeostasis in human ovaries in vitro

Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors

Jotanovic, Jelena; Tebani, Abdellah; Hekmati, Neda; Sivertsson, Åsa et al.

Ingår i Journal of the Endocrine Society, 2024

• DOI för Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors
• Ladda ner fulltext (pdf) av Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors

Deubiquitinase USP9x regulates the proline biosynthesis pathway in non-small cell lung cancer

Becirovic, Tina; Zhang, Boxi; Lindskog, Cecilia; Norberg, Erik et al.

Ingår i Cell Death Discovery, 2024

• DOI för Deubiquitinase USP9x regulates the proline biosynthesis pathway in non-small cell lung cancer
• Ladda ner fulltext (pdf) av Deubiquitinase USP9x regulates the proline biosynthesis pathway in non-small cell lung cancer

The Human Phospholipase B-II Precursor (HPLBII-P) in Urine as a Novel Biomarker of Increased Glomerular Production or Permeability in Diabetes Mellitus?

Xu, Shengyuan; Larsson, Anders; Lind, Lars; Lindskog, Cecilia et al.

Ingår i Journal of Clinical Medicine, 2024

• DOI för The Human Phospholipase B-II Precursor (HPLBII-P) in Urine as a Novel Biomarker of Increased Glomerular Production or Permeability in Diabetes Mellitus?
• Ladda ner fulltext (pdf) av The Human Phospholipase B-II Precursor (HPLBII-P) in Urine as a Novel Biomarker of Increased Glomerular Production or Permeability in Diabetes Mellitus?

The Human Phospholipase B-II Precursor (HPLBII-P) in Urine as a Novel Biomarker of Glomerular Activity in COVID-19 and Diabetes Mellitus

Xu, Shengyuan; Hultström, Michael; Larsson, Anders; Lipcsey, Miklós et al.

Ingår i Journal of Clinical Medicine, 2024

• DOI för The Human Phospholipase B-II Precursor (HPLBII-P) in Urine as a Novel Biomarker of Glomerular Activity in COVID-19 and Diabetes Mellitus
• Ladda ner fulltext (pdf) av The Human Phospholipase B-II Precursor (HPLBII-P) in Urine as a Novel Biomarker of Glomerular Activity in COVID-19 and Diabetes Mellitus

A human stomach cell type transcriptome atlas

Öling, S.; Struck, E.; Noreen-Thorsen, M.; Zwahlen, M. et al.

Ingår i BMC Biology, 2024

• DOI för A human stomach cell type transcriptome atlas
• Ladda ner fulltext (pdf) av A human stomach cell type transcriptome atlas

Expression of cancer-testis antigens in the immune microenvironment of non-small cell lung cancer

Hikmet Noraddin, Feria; Rassy, Marc; Backman, Max; Méar, Loren et al.

Ingår i Molecular Oncology, s. 2603-2617, 2023

• DOI för Expression of cancer-testis antigens in the immune microenvironment of non-small cell lung cancer
• Ladda ner fulltext (pdf) av Expression of cancer-testis antigens in the immune microenvironment of non-small cell lung cancer

Determinants of iFGF13-mediated regulation of myocardial voltage-gated sodium (Na_V) channels in mouse

Lesage, Adrien; Lorenzini, Maxime; Burel, Sophie; Sarlandie, Marine et al.

Ingår i The Journal of General Physiology, 2023

• DOI för Determinants of iFGF13-mediated regulation of myocardial voltage-gated sodium (Na_V) channels in mouse

Meningioma classification by immunohistochemistry: A replicability study

Naslunda, Olivia; Lipatnikova, Anna; Denes, Anna; Lindskog, Cecilia et al.

Ingår i Brain and Spine, 2023

• DOI för Meningioma classification by immunohistochemistry: A replicability study
• Ladda ner fulltext (pdf) av Meningioma classification by immunohistochemistry: A replicability study

The human protein atlas-Integrated omics for single cell mapping of the human proteome

Digre, Andreas; Lindskog, Cecilia

Ingår i Protein Science, 2023

• DOI för The human protein atlas-Integrated omics for single cell mapping of the human proteome
• Ladda ner fulltext (pdf) av The human protein atlas-Integrated omics for single cell mapping of the human proteome

Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms

Jain, Yashvardhan; Godwin, Leah L.; Joshi, Sripad; Mandarapu, Shriya et al.

Ingår i Nature Communications, 2023

• DOI för Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms
• Ladda ner fulltext (pdf) av Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms

The 2022 Report on the Human Proteome from the HUPO Human Proteome Project

Omenn, Gilbert S.; Lane, Lydie; Overall, Christopher M.; Pineau, Charles et al.

Ingår i Journal of Proteome Research, s. 1024-1042, 2023

• DOI för The 2022 Report on the Human Proteome from the HUPO Human Proteome Project

Proteogenomic analysis of acute myeloid leukemia associates relapsed disease with reprogrammed energy metabolism both in adults and children

Stratmann, Svea; Vesterlund, Mattias; Umer, Husen M.; Skaftason, Aron et al.

Ingår i Leukemia, s. 550-559, 2023

• DOI för Proteogenomic analysis of acute myeloid leukemia associates relapsed disease with reprogrammed energy metabolism both in adults and children
• Ladda ner fulltext (pdf) av Proteogenomic analysis of acute myeloid leukemia associates relapsed disease with reprogrammed energy metabolism both in adults and children

A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks

Naguib, Mahmoud; Eriksson, Per; Jax, Elinor; Wille, Michelle et al.

Ingår i Microbiology Spectrum, 2023

• DOI för A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks
• Ladda ner fulltext (pdf) av A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks

Inhibiting the glycerophosphodiesterase EDI3 in ER-HER2+breast cancer cells resistant to HER2-targeted therapy reduces viability and tumour growth

Keller, Magdalena; Rohlf, Katharina; Glotzbach, Annika; Leonhardt, Gregor et al.

Ingår i Journal of Experimental & Clinical Cancer Research, 2023

• DOI för Inhibiting the glycerophosphodiesterase EDI3 in ER-HER2+breast cancer cells resistant to HER2-targeted therapy reduces viability and tumour growth
• Ladda ner fulltext (pdf) av Inhibiting the glycerophosphodiesterase EDI3 in ER-HER2+breast cancer cells resistant to HER2-targeted therapy reduces viability and tumour growth

The clinical value of proneural, classical and mesenchymal protein signatures in WHO 2021 adult-type diffuse lower-grade gliomas

Denes, Anna; Bontell, Thomas Olsson; Barcheus, Hanna; Vega, Sandra Ferreyra et al.

Ingår i PLOS ONE, 2023

• DOI för The clinical value of proneural, classical and mesenchymal protein signatures in WHO 2021 adult-type diffuse lower-grade gliomas
• Ladda ner fulltext (pdf) av The clinical value of proneural, classical and mesenchymal protein signatures in WHO 2021 adult-type diffuse lower-grade gliomas

Spatial Proteomics for Further Exploration of Missing Proteins: A Case Study of the Ovary

Méar, Loren; Sutantiwanichkul, Thanadol; Östman, Josephine; Damdimopoulou, Pauliina et al.

Ingår i Journal of Proteome Research, s. 1071-1079, 2023

• DOI för Spatial Proteomics for Further Exploration of Missing Proteins: A Case Study of the Ovary
• Ladda ner fulltext (pdf) av Spatial Proteomics for Further Exploration of Missing Proteins: A Case Study of the Ovary

Sex- and Female Age-Dependent Differences in Gene Expression in Diffuse Large B-Cell Lymphoma-Possible Estrogen Effects

Huang, Dan; Berglund, Mattias; Damdimopoulos, Anastasios; Antonson, Per et al.

Ingår i Cancers, 2023

• DOI för Sex- and Female Age-Dependent Differences in Gene Expression in Diffuse Large B-Cell Lymphoma-Possible Estrogen Effects
• Ladda ner fulltext (pdf) av Sex- and Female Age-Dependent Differences in Gene Expression in Diffuse Large B-Cell Lymphoma-Possible Estrogen Effects

Expression of IDO1 and PD-L2 in Patients with Benign Lymphadenopathies and Association with Autoimmune Diseases

Abdulla, Maysaa; Sundström, Christer; Lindskog, Cecilia; Hollander, Peter

Ingår i Biomolecules, 2023

• DOI för Expression of IDO1 and PD-L2 in Patients with Benign Lymphadenopathies and Association with Autoimmune Diseases
• Ladda ner fulltext (pdf) av Expression of IDO1 and PD-L2 in Patients with Benign Lymphadenopathies and Association with Autoimmune Diseases

A human adipose tissue cell-type transcriptome atlas

Norreen-Thorsen, Marthe; Struck, Eike Christopher; Oling, Sofia; Zwahlen, Martin et al.

Ingår i Cell Reports, 2022

• DOI för A human adipose tissue cell-type transcriptome atlas
• Ladda ner fulltext (pdf) av A human adipose tissue cell-type transcriptome atlas

Protein Expression Profile of ACE2 in the Normal and COVID-19-Affected Human Brain.

Lindskog, Cecilia; Méar, Loren; Virhammar, Johan; Fällmar, David et al.

Ingår i Journal of Proteome Research, s. 2137-2145, 2022

• DOI för Protein Expression Profile of ACE2 in the Normal and COVID-19-Affected Human Brain.
• Ladda ner fulltext (pdf) av Protein Expression Profile of ACE2 in the Normal and COVID-19-Affected Human Brain.

AGPAT1 as a Novel Colonic Biomarker for Discriminating Between Ulcerative Colitis With and Without Primary Sclerosing Cholangitis

Vessby, Johan; Wisniewski, Jacek R.; Lindskog, Cecilia; Eriksson, Niclas et al.

Ingår i Clinical and Translational Gastroenterology, 2022

• DOI för AGPAT1 as a Novel Colonic Biomarker for Discriminating Between Ulcerative Colitis With and Without Primary Sclerosing Cholangitis

Genomic Multiple Sclerosis Risk Variants Modulate the Expression of the ANKRD55-IL6ST Gene Region in Immature Dendritic Cells

Mena, Jorge; Alloza, Iraide; Tulloch Navarro, Raquel; Aldekoa, Ane et al.

Ingår i Frontiers in Immunology, 2022

• DOI för Genomic Multiple Sclerosis Risk Variants Modulate the Expression of the ANKRD55-IL6ST Gene Region in Immature Dendritic Cells
• Ladda ner fulltext (pdf) av Genomic Multiple Sclerosis Risk Variants Modulate the Expression of the ANKRD55-IL6ST Gene Region in Immature Dendritic Cells

Genome-wide annotation of protein-coding genes in pig

Karlsson, Max; Sjöstedt, Evelina; Oksvold, Per; Sivertsson, Asa et al.

Ingår i BMC Biology, 2022

• DOI för Genome-wide annotation of protein-coding genes in pig
• Ladda ner fulltext (pdf) av Genome-wide annotation of protein-coding genes in pig

Outcome in PCNSL patients and its association with PD-L1+leukocytes in the tumor microenvironment

Abdulla, Maysaa; Hollander, Peter; Lindskog, Cecilia; Sundström, Christer et al.

Ingår i Acta Oncologica, s. 824-829, 2022

• DOI för Outcome in PCNSL patients and its association with PD-L1+leukocytes in the tumor microenvironment

Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level

Wang, Fei; Ding, Peiwen; Liang, Xue; Ding, Xiangning et al.

Ingår i Nature Communications, 2022

• DOI för Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level
• Ladda ner fulltext (pdf) av Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level

Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction

Olsson, Henrik; Kartasalo, Kimmo; Mulliqi, Nita; Capuccini, Marco et al.

Ingår i Nature Communications, 2022

• DOI för Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction
• Ladda ner fulltext (pdf) av Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction

Stemness and clinical features in relation to the subventricular zone in diffuse lower-grade glioma: an exploratory study

Corell, Alba; Vecchio, Tomas Gomez; Vega, Sandra Ferreyra; Denes, Anna et al.

Ingår i Neuro-Oncology Advances, 2022

• DOI för Stemness and clinical features in relation to the subventricular zone in diffuse lower-grade glioma: an exploratory study
• Ladda ner fulltext (pdf) av Stemness and clinical features in relation to the subventricular zone in diffuse lower-grade glioma: an exploratory study

Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer

Backman, Max; La Fleur, Linnea; Kurppa, Pinja; Djureinovic, Dijana et al.

Ingår i Journal of Pathology, s. 243-256, 2021

• DOI för Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer
• Ladda ner fulltext (pdf) av Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer

The prognostic impact of the tumour stroma fraction: A machine learning-based analysis in 16 human solid tumour types

Micke, Patrick; Strell, Carina; Mattsson, Johanna Sofia Margareta; Martin-Bernabe, Alfonso et al.

Ingår i eBioMedicine, 2021

• DOI för The prognostic impact of the tumour stroma fraction: A machine learning-based analysis in 16 human solid tumour types
• Ladda ner fulltext (pdf) av The prognostic impact of the tumour stroma fraction: A machine learning-based analysis in 16 human solid tumour types

Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL(pro) substrate degradome

Pablos, Isabel; Machado, Yoan; de Jesus, Hugo C. Ramos; Mohamud, Yasir et al.

Ingår i Cell Reports, 2021

• DOI för Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL(pro) substrate degradome
• Ladda ner fulltext (pdf) av Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL(pro) substrate degradome

TGFBR3L-An Uncharacterised Pituitary Specific Membrane Protein Detected in the Gonadotroph Cells in Non-Neoplastic and Tumour Tissue

Sjöstedt, Evelina; Kolnes, Anders J; Olarescu, Nicoleta C; Mitsios, Nicholas et al.

Ingår i Cancers, 2021

• DOI för TGFBR3L-An Uncharacterised Pituitary Specific Membrane Protein Detected in the Gonadotroph Cells in Non-Neoplastic and Tumour Tissue
• Ladda ner fulltext (pdf) av TGFBR3L-An Uncharacterised Pituitary Specific Membrane Protein Detected in the Gonadotroph Cells in Non-Neoplastic and Tumour Tissue

Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project

Omenn, Gilbert S.; Lane, Lydie; Overall, Christopher M.; Paik, Young-Ki et al.

Ingår i Journal of Proteome Research, s. 5227-5240, 2021

• DOI för Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project

Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro

Garcia-Alonso, Luz; Handfield, Louis-Francois; Roberts, Kenny; Nikolakopoulou, Konstantina et al.

Ingår i Nature Genetics, s. 1698, 2021

• DOI för Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
• Ladda ner fulltext (pdf) av Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro

A Diffusion-like Process Accommodates New Crypts During Clonal Expansion in Human Colonic Epithelium

Olpe, Cora; Khamis, Doran; Chukanova, Maria; Skoufou-Papoutsaki, Nefeli et al.

Ingår i Gastroenterology, s. 548-559, 2021

• DOI för A Diffusion-like Process Accommodates New Crypts During Clonal Expansion in Human Colonic Epithelium
• Ladda ner fulltext (pdf) av A Diffusion-like Process Accommodates New Crypts During Clonal Expansion in Human Colonic Epithelium

DeepHistoClass: A Novel Strategy for Confident Classification of Immunohistochemistry Images Using Deep Learning

Ghoshal, Biraja; Hikmet, Feria; Pineau, Charles; Tucker, Allan et al.

Ingår i Molecular & Cellular Proteomics, 2021

• DOI för DeepHistoClass: A Novel Strategy for Confident Classification of Immunohistochemistry Images Using Deep Learning
• Ladda ner fulltext (pdf) av DeepHistoClass: A Novel Strategy for Confident Classification of Immunohistochemistry Images Using Deep Learning

Combined RNA/tissue profiling identifies novel Cancer/testis genes

Jamin, Soazik P.; Hikmet, Feria; Mathieu, Romain; Jégou, Bernard et al.

Ingår i Molecular Oncology, s. 3003-3023, 2021

• DOI för Combined RNA/tissue profiling identifies novel Cancer/testis genes
• Ladda ner fulltext (pdf) av Combined RNA/tissue profiling identifies novel Cancer/testis genes

Spatiotemporal dissection of the cell cycle with single-cell proteogenomics

Mahdessian, Diana; Cesnik, Anthony J.; Gnann, Christian; Danielsson, Frida et al.

Ingår i Nature, s. 649-654, 2021

• DOI för Spatiotemporal dissection of the cell cycle with single-cell proteogenomics

A single-cell type transcriptomics map of human tissues

Karlsson, Max; Zhang, Cheng; Méar, Loren; Zhong, Wen et al.

Ingår i Science Advances, 2021

• DOI för A single-cell type transcriptomics map of human tissues
• Ladda ner fulltext (pdf) av A single-cell type transcriptomics map of human tissues

Interobserver reproducibility of perineural invasion of prostatic adenocarcinoma in needle biopsies

Egevad, Lars; Delahunt, Brett; Samaratunga, Hemamali; Tsuzuki, Toyonori et al.

Ingår i Virchows Archiv, s. 1109-1116, 2021

• DOI för Interobserver reproducibility of perineural invasion of prostatic adenocarcinoma in needle biopsies
• Ladda ner fulltext (pdf) av Interobserver reproducibility of perineural invasion of prostatic adenocarcinoma in needle biopsies

PD-L1 and IDO1 are potential targets for treatment in patients with primary diffuse large B-cell lymphoma of the CNS

Abdulla, Maysaa; Alexsson, Andrei; Sundström, Christer; Ladenvall, Claes et al.

Ingår i Acta Oncologica, s. 531-538, 2021

• DOI för PD-L1 and IDO1 are potential targets for treatment in patients with primary diffuse large B-cell lymphoma of the CNS
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The Human Protein Atlas - Spatial localization of the human proteome in health and disease

Digre, Andreas; Lindskog, Cecilia

Ingår i Protein Science, s. 218-233, 2021

• DOI för The Human Protein Atlas - Spatial localization of the human proteome in health and disease

Re: Artificial Intelligence for Diagnosis and Grading of Prostate Cancer in Biopsies: A Population-Based, Diagnostic Study

Ström, Peter; Kartasalo, Kimmo; Olsson, Henrik; Solorzano, Leslie et al.

Ingår i Journal of Urology, s. 620-621, 2020

• DOI för Re: Artificial Intelligence for Diagnosis and Grading of Prostate Cancer in Biopsies: A Population-Based, Diagnostic Study

Enhanced Validation of Antibodies Enables the Discovery of Missing Proteins

Sivertsson, Åsa; Lindström, Emil; Oksvold, Per; Katona, Borbala et al.

Ingår i Journal of Proteome Research, s. 4766-4781, 2020

• DOI för Enhanced Validation of Antibodies Enables the Discovery of Missing Proteins
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Research on the Human Proteome Reaches a Major Milestone: > 90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project

Omenn, Gilbert S.; Lane, Lydie; Overall, Christopher M.; Cristea, Ileana M. et al.

Ingår i Journal of Proteome Research, s. 4735-4746, 2020

• DOI för Research on the Human Proteome Reaches a Major Milestone: > 90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project

A high-stringency blueprint of the human proteome

Adhikari, Subash; Nice, Edouard C.; Deutsch, Eric W.; Lane, Lydie et al.

Ingår i Nature Communications, 2020

• DOI för A high-stringency blueprint of the human proteome
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The protein expression profile of ACE2 in human tissues

Noraddin, Feria Hikmet; Méar, Loren; Edvinsson, Åsa; Micke, Patrick et al.

Ingår i Molecular Systems Biology, 2020

• DOI för The protein expression profile of ACE2 in human tissues

Artificial intelligence for diagnosis and grading of prostate cancer in biopsies: a population-based, diagnostic study

Strom, Peter; Kartasalo, Kimmo; Olsson, Henrik; Solorzano, Leslie et al.

Ingår i The Lancet Oncology, s. 222-232, 2020

• DOI för Artificial intelligence for diagnosis and grading of prostate cancer in biopsies: a population-based, diagnostic study

Marginal zone lymphoma expression of histidine-rich glycoprotein correlates with improved survival

Persson Skare, Tor; Sjöberg, Elin; Berglund, Mattias; Smith, Ross O. et al.

Ingår i eJHaem, s. 199-207, 2020

• DOI för Marginal zone lymphoma expression of histidine-rich glycoprotein correlates with improved survival
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An atlas of the protein-coding genes in the human, pig, and mouse brain

Sjostedt, Evelina; Zhong, Wen; Fagerberg, Linn; Karlsson, Max et al.

Ingår i Science, s. 1090-+, 2020

• DOI för An atlas of the protein-coding genes in the human, pig, and mouse brain

Tumor endothelial ELTD1 as a predictive marker for treatment of renal cancer patients with sunitinib

Niinivirta, Marjut; Georganaki, Maria; Enblad, Gunilla; Lindskog, Cecilia et al.

Ingår i BMC Cancer, 2020

• DOI för Tumor endothelial ELTD1 as a predictive marker for treatment of renal cancer patients with sunitinib
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Candidate protein biomarkers in pancreatic neuroendocrine neoplasms grade 3

Ali, Abir Salwa; Perren, Aurel; Lindskog, Cecilia; Welin, Staffan et al.

Ingår i Scientific Reports, 2020

• DOI för Candidate protein biomarkers in pancreatic neuroendocrine neoplasms grade 3
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Proximity Ligation Assay as a Tool for Antibody Validation in Human Tissues

Lindskog, Cecilia; Backman, Max; Zieba, Agata; Asplund, Anna et al.

Ingår i Journal of Histochemistry and Cytochemistry, s. 515-529, 2020

• DOI för Proximity Ligation Assay as a Tool for Antibody Validation in Human Tissues

Systematic analysis reveals a functional role for STAMBPL1 in the epithelial-mesenchymal transition process across multiple carcinomas

Ambroise, Gorbatchev; Yu, Ting-ting; Zhang, Boxi; Kacal, Merve et al.

Ingår i British Journal of Cancer, s. 1164-1177, 2020

• DOI för Systematic analysis reveals a functional role for STAMBPL1 in the epithelial-mesenchymal transition process across multiple carcinomas

Somatostatin receptor expression and mTOR pathway activation in glioneuronal tumours of childhood

Ehrstedt, Christoffer; Ahlsten, Gunnar; Strömberg, Bo; Lindskog, Cecilia et al.

Ingår i Seizure, s. 123-130, 2020

• DOI för Somatostatin receptor expression and mTOR pathway activation in glioneuronal tumours of childhood

ASCL1 promotes tumor progression through cell-autonomous signaling and immune modulation in a subset of lung adenocarcinoma

Miyashita, Naoya; Horie, Masafumi; Mikami, Yu; Urushiyama, Hirokazu et al.

Ingår i Cancer Letters, s. 121-132, 2020

• DOI för ASCL1 promotes tumor progression through cell-autonomous signaling and immune modulation in a subset of lung adenocarcinoma

Perivascular Neuropilin-1 expression is an independent marker of improved survival in renal cell carcinoma

Morin, Eric; Lindskog, Cecilia; Johansson, Martin; Egevad, Lars et al.

Ingår i Journal of Pathology, s. 387-396, 2020

• DOI för Perivascular Neuropilin-1 expression is an independent marker of improved survival in renal cell carcinoma
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The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty

Guo, Jingtao; Nie, Xichen; Giebler, Maria; Mlcochova, Hana et al.

Ingår i Cell Stem Cell, s. 262-+, 2020

• DOI för The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty
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Cell Type-Specific Expression of Testis Elevated Genes Based on Transcriptomics and Antibody-Based Proteomics

Pineau, Charles; Hikmet, Feria; Zhang, Cheng; Oksvold, Per et al.

Ingår i Journal of Proteome Research, s. 4215-4230, 2019

• DOI för Cell Type-Specific Expression of Testis Elevated Genes Based on Transcriptomics and Antibody-Based Proteomics

The human secretome

Uhlen, Mathias; Karlsson, Max J.; Hober, Andreas; Svensson, Anne-Sophie et al.

Ingår i Science Signaling, 2019

• DOI för The human secretome

Attachment Patterns of Human and Avian Influenza Viruses to Trachea and Colon of 26 Bird Species: Support for the Community Concept

Eriksson, Per; Lindskog, Cecilia; Lorente-Leal, Victor; Waldenström, Jonas et al.

Ingår i Frontiers in Microbiology, 2019

• DOI för Attachment Patterns of Human and Avian Influenza Viruses to Trachea and Colon of 26 Bird Species: Support for the Community Concept
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Tumoral pyruvate kinase L/R as a predictive marker for the treatment of renal cancer patients with sunitinib and sorafenib

Niinivirta, Marjut; Enblad, Gunilla; Lindskog, Cecilia; Pontén, Fredrik et al.

Ingår i Journal of Cancer, s. 3224-3231, 2019

• DOI för Tumoral pyruvate kinase L/R as a predictive marker for the treatment of renal cancer patients with sunitinib and sorafenib
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Programmed Cell Death Ligand 1 Immunohistochemistry: A Concordance Study Between Surgical Specimen, Biopsy, and Tissue Microarray

Elfving, Hedvig; Mattsson, Johanna Sofia Margareta; Lindskog, Cecilia; Backman, Max et al.

Ingår i Clinical Lung Cancer, s. 258-2620, 2019

• DOI för Programmed Cell Death Ligand 1 Immunohistochemistry: A Concordance Study Between Surgical Specimen, Biopsy, and Tissue Microarray

A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

Uhlen, Mathias; Karlsson, Max J.; Zhong, Wen; Tebani, Abdellah et al.

Ingår i Science, s. 1471-+, 2019

• DOI för A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

PPP2R2A prostate cancer haploinsufficiency is associated with worse prognosis and a high vulnerability to B55 alpha/PP2A reconstitution that triggers centrosome destabilization

Zhao, Ziran; Kurimchak, Alison; Nikonova, Anna S.; Feiser, Felicity et al.

Ingår i Oncogenesis, 2019

• DOI för PPP2R2A prostate cancer haploinsufficiency is associated with worse prognosis and a high vulnerability to B55 alpha/PP2A reconstitution that triggers centrosome destabilization
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Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC

Edlund, Karolina; Madjar, Katrin; Mattsson, Johanna Sofia Margareta; Djureinovic, Dijana et al.

Ingår i Journal of Thoracic Oncology, s. 628-640, 2019

• DOI för Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC
• Ladda ner fulltext (pdf) av Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC

A High-throughput Bead-based Affinity Assay Enables Analysis of Genital Protein Signatures in Women At Risk of HIV Infection

Månberg, Anna; Bradley, Frideborg; Qundos, Ulrika; Guthrie, Brandon L. et al.

Ingår i Molecular & Cellular Proteomics, s. 461-476, 2019

• DOI för A High-throughput Bead-based Affinity Assay Enables Analysis of Genital Protein Signatures in Women At Risk of HIV Infection

Characterization of avian influenza virus attachment patterns to human and pig tissues

Eriksson, Per; Lindskog, Cecilia; Engholm, Ebbe; Blixt, Ola et al.

Ingår i Scientific Reports, 2018

• DOI för Characterization of avian influenza virus attachment patterns to human and pig tissues
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The human protein atlas: A spatial map of the human proteome

Thul, Peter J.; Lindskog, Cecilia

Ingår i Protein Science, s. 233-244, 2018

• DOI för The human protein atlas: A spatial map of the human proteome

Integration of Transcriptomics and Antibody-Based Proteomics for Exploration of Proteins Expressed in Specialized Tissues

Sjöstedt, Evelina; Sivertsson, Åsa; Noraddin, Feria Hikmet; Katona, Borbala et al.

Ingår i Journal of Proteome Research, s. 4127-4137, 2018

• DOI för Integration of Transcriptomics and Antibody-Based Proteomics for Exploration of Proteins Expressed in Specialized Tissues

Enhanced validation of antibodies for research applications

Edfors, Fredrik; Hober, Andreas; Linderbäck, Klas; Maddalo, Gianluca et al.

Ingår i Nature Communications, 2018

• DOI för Enhanced validation of antibodies for research applications
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VEGF receptor-2/neuropilin 1 trans-complex formation between endothelial and tumor cells is an independent predictor of pancreatic cancer survival

Morin, Eric; Sjöberg, Elin; Tjomsland, Vegard; Testini, Chiara et al.

Ingår i Journal of Pathology, s. 311-322, 2018

• DOI för VEGF receptor-2/neuropilin 1 trans-complex formation between endothelial and tumor cells is an independent predictor of pancreatic cancer survival
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An Integrative Analysis of Transcriptome and Epigenome Features of ASCL1-Positive Lung Adenocarcinomas

Miyashita, Naoya; Horie, Masafumi; Suzuki, Hiroshi I.; Yoshihara, Masahito et al.

Ingår i Journal of Thoracic Oncology, s. 1676-1691, 2018

• DOI för An Integrative Analysis of Transcriptome and Epigenome Features of ASCL1-Positive Lung Adenocarcinomas

Dishevelled enables casein kinase 1-mediated phosphorylation of Frizzled 6 required for cell membrane localization

Strakova, Katerina; Kowalski-Jahn, Maria; Gybel, Tomas; Valnohova, Jana et al.

Ingår i Journal of Biological Chemistry, s. 18477-18493, 2018

• DOI för Dishevelled enables casein kinase 1-mediated phosphorylation of Frizzled 6 required for cell membrane localization

The adult human testis transcriptional cell atlas

Guo, Jingtao; Grow, Edward J.; Mlcochova, Hana; Maher, Geoffrey J. et al.

Ingår i Cell Research, s. 1141-1157, 2018

• DOI för The adult human testis transcriptional cell atlas
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Fixation and Spread of Somatic Mutations in Adult Human Colonic Epithelium

Nicholson, Anna M.; Olpe, Cora; Hoyle, Alice; Thorsen, Ann-Sofie et al.

Ingår i Cell Stem Cell, s. 909-91800000000, 2018

• DOI för Fixation and Spread of Somatic Mutations in Adult Human Colonic Epithelium
• Ladda ner fulltext (pdf) av Fixation and Spread of Somatic Mutations in Adult Human Colonic Epithelium

Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods

Carapito, Christine; Duek, Paula; Macron, Charlotte; Seffals, Marine et al.

Ingår i Journal of Proteome Research, s. 4340-4351, 2017

• DOI för Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods

A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family

Carreras-Puigvert, Jordi; Zitnik, Marinka; Jemth, Ann-Sofie; Carter, Megan et al.

Ingår i Nature Communications, 2017

• DOI för A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family
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A specific antibody to detect transcription factor T-Pit: a reliable marker of corticotroph cell differentiation and a tool to improve the classification of pituitary neuroendocrine tumours

Sjöstedt, Evelina; Bollerslev, Jens; Mulder, Jan; Lindskog, Cecilia et al.

Ingår i Acta Neuropathologica, s. 675-677, 2017

• DOI för A specific antibody to detect transcription factor T-Pit: a reliable marker of corticotroph cell differentiation and a tool to improve the classification of pituitary neuroendocrine tumours

A subcellular map of the human proteome

Thul, Peter J.; åkesson, Lovisa; Wiking, Mikaela; Mahdessian, Diana et al.

Ingår i Science, 2017

• DOI för A subcellular map of the human proteome

A pathology atlas of the human cancer transcriptome

Uhlen, Mathias; Zhang, Cheng; Lee, Sunjae; Sjöstedt, Evelina et al.

Ingår i Science, 2017

• DOI för A pathology atlas of the human cancer transcriptome

Chromatin and Single-Cell RNA- Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development

Guo, Jingtao; Grow, Edward J.; Yi, Chongil; Mlcochova, Hana et al.

Ingår i Cell Stem Cell, s. 533-546, 2017

• DOI för Chromatin and Single-Cell RNA- Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development

Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy

ten Berge, Josianne C.; van Rosmalen, Joost; Vermeer, Jacolien; Hellström, Cecilia et al.

Ingår i PLOS ONE, 2016

• DOI för Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy
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Protein profiles of CCL5, HPGDS, and NPSR1 in plasma reveal association with childhood asthma

Hamsten, C.; Häggmark, A.; Grundström, J.; Mikus, M. et al.

Ingår i Allergy. European Journal of Allergy and Clinical Immunology, s. 1357-1361, 2016

• DOI för Protein profiles of CCL5, HPGDS, and NPSR1 in plasma reveal association with childhood asthma

The Human Protein Atlas: – an important resource for basic and clinical research

Lindskog, Cecilia

Ingår i Expert Review of Proteomics, s. 627-629, 2016

• DOI för The Human Protein Atlas: – an important resource for basic and clinical research

Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update

Vandenbrouck, Yves; Lane, Lydie; Carapito, Christine; Duek, Paula et al.

Ingår i Journal of Proteome Research, s. 3998-4019, 2016

• DOI för Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update

Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy

ten Berge, Josianne C.; van Rosmalen, Joost; Vermeer, Jacolien; Hellström, Cecilia et al.

Ingår i PLOS ONE, 2016

• DOI för Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy

A Systematic Characterization of Aquaporin-9 Expression in Human Normal and Pathological Tissues

Lindskog, Cecilia; Asplund, Anna; Catrina, Anca; Nielsen, Soren et al.

Ingår i Journal of Histochemistry and Cytochemistry, s. 287-300, 2016

• DOI för A Systematic Characterization of Aquaporin-9 Expression in Human Normal and Pathological Tissues

Protein profiles of CCL5, HPGDS, and NPSR1 in plasma reveal association with childhood asthma

Hamsten, C.; Häggmark, A.; Grundström, J.; Mikus, M. et al.

Ingår i Allergy. European Journal of Allergy and Clinical Immunology, s. 1357-1361, 2016

• DOI för Protein profiles of CCL5, HPGDS, and NPSR1 in plasma reveal association with childhood asthma

The Human Protein Atlas – an important resource for basic and clinical research

Lindskog, Cecilia

Ingår i Expert Review of Proteomics, s. 627-629, 2016

• DOI för The Human Protein Atlas – an important resource for basic and clinical research

Profiling cancer testis antigens in non-small-cell lung cancer

Djureinovic, Dijana; Hallström, Bjorn M.; Horie, Masafumi; Mattsson, Johanna Sofia Margareta et al.

Ingår i JCI INSIGHT, 2016

• DOI för Profiling cancer testis antigens in non-small-cell lung cancer

System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis

Pozniak, Yair; Balint-Lahat, Nora; Rudolph, Jan Daniel; Lindskog, Cecilia et al.

Ingår i CELL SYSTEMS, s. 172-184, 2016

• DOI för System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

Lindskog, Cecilia; Linné, Jerker; Fagerberg, Linn; Hallstrom, Bjorn M. et al.

Ingår i BMC Genomics, 2015

• DOI för The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling
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The potential clinical impact of the tissue-based map of the human proteome

Lindskog, Cecilia

Ingår i Expert Review of Proteomics, s. 213-215, 2015

• DOI för The potential clinical impact of the tissue-based map of the human proteome

The Identification of Therapeutic Targets in Lung Cancer Based on Transcriptomic and Proteomic Characterization of Cancer-Testis Antigens

Djureinovic, Dijana; Hallström, Björn; Mattsson, Johanna Sofia Margareta; La Fleur, Linnea et al.

Ingår i Journal of Thoracic Oncology, 2015

Proteomic Profiling Reveals Autoimmune Targets in Sarcoidosis

Haggmark, Anna; Hamsten, Carl; Wiklundh, Emil; Lindskog, Cecilia et al.

Ingår i American Journal of Respiratory and Critical Care Medicine, s. 574-583, 2015

• DOI för Proteomic Profiling Reveals Autoimmune Targets in Sarcoidosis

Tissue-based map of the human proteome

Uhlen, Mathias; Fagerberg, Linn; Hallstroem, Bjoern M.; Lindskog, Cecilia et al.

Ingår i Science, s. 394-+, 2015

• DOI för Tissue-based map of the human proteome

The Human Pancreas Proteome Defined by Transcriptomics and Antibody-Based Profiling

Danielsson, Angelika; Ponten, Fredrik; Fagerberg, Linn; Hallstrom, Bjorn M. et al.

Ingår i PLOS ONE, 2014

• DOI för The Human Pancreas Proteome Defined by Transcriptomics and Antibody-Based Profiling
• Ladda ner fulltext (pdf) av The Human Pancreas Proteome Defined by Transcriptomics and Antibody-Based Profiling

The human testis-specific proteome defined by transcriptomics and antibody-based profiling

Djureinovic, Dijana; Fagerberg, L.; Hallstrom, B.; Danielsson, A. et al.

Ingår i Molecular human reproduction, s. 476-488, 2014

• DOI för The human testis-specific proteome defined by transcriptomics and antibody-based profiling

The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling

Lindskog, Cecilia; Fagerberg, Linn; Hallstrom, Bjorn; Edlund, Karolina et al.

Ingår i The FASEB Journal, s. 5184-5196, 2014

• DOI för The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling

Analysis of Candidate Genes for Lineage-Specific Expression Changes in Humans and Primates

Lindskog, Cecilia; Kuhlwilm, Martin; Davierwala, Armaity; Fu, Ning et al.

Ingår i Journal of Proteome Research, s. 3596-3606, 2014

• DOI för Analysis of Candidate Genes for Lineage-Specific Expression Changes in Humans and Primates

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

Fagerberg, Linn; Hallström, Björn M; Oksvold, Per; Kampf, Caroline et al.

Ingår i Molecular & Cellular Proteomics, s. 397-406, 2014

• DOI för Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

Lindskog, Cecilia; Ellström, Patrik; Olsen, Björn; Pontén, Fredrik et al.

Ingår i PLOS ONE, 2013

• DOI för European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

Lindskog, Cecilia; Ellström, Patrik; Olsen, Björn; Pontén, Fredrik et al.

Ingår i PLOS ONE, 2013

• DOI för European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye
• Ladda ner fulltext (pdf) av European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

CD99 is a novel prognostic stromal marker in non-small cell lung cancer

Edlund, Karolina; Lindskog, Cecilia; Saito, Akira; Berglund, Anders et al.

Ingår i International Journal of Cancer, s. 2264-2273, 2012

• DOI för CD99 is a novel prognostic stromal marker in non-small cell lung cancer

Novel pancreatic beta cell-specific proteins: Antibody-based proteomics for identification of new biomarker candidates

Lindskog, Cecilia; Korsgren, Olle; Pontén, Fredrik; Eriksson, Jan W et al.

Ingår i Journal of Proteomics, s. 2611-2620, 2012

• DOI för Novel pancreatic beta cell-specific proteins: Antibody-based proteomics for identification of new biomarker candidates

Novel antigen design for the generation of antibodies to G-protein-coupled receptors

Larsson, K.; Hofstrom, C.; Lindskog, Cecilia; Hansson, M. et al.

Ingår i JIM - Journal of Immunological Methods, s. 14-23, 2011

• DOI för Novel antigen design for the generation of antibodies to G-protein-coupled receptors

Antibody-based proteomics for discovery and exploration of proteins expressed in pancreatic islets

Lindskog, Cecilia; Asplund, Anna; Engkvist, Margareta; Pontén, Fredrik et al.

Ingår i Discovery Medicine, s. 565-578, 2010

A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues

Björling, Erik; Lindskog, Cecilia; Oksvold, Per; Linné, Jerker et al.

Ingår i Molecular & Cellular Proteomics, s. 825-844, 2008

• DOI för A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues

H16 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

Lindskog, Cecilia; Ellström, Patrik; Olsen, Björn; Pontén, Fredrik et al.

Ingår i Emerging Infectious Diseases

The 2024 Report on the Human Proteome from the HUPO Human Proteome Project

Omenn, Gilbert S.; Orchard, Sandra; Lane, Lydie; Lindskog, Cecilia et al.

Ingår i Journal of Proteome Research, s. 5296-5311, 2024

• DOI för The 2024 Report on the Human Proteome from the HUPO Human Proteome Project

The 2023 Report on the Proteome from the HUPO Human Proteome Project

Omenn, Gilbert S.; Lane, Lydie; Overall, Christopher M.; Lindskog, Cecilia et al.

Ingår i Journal of Proteome Research, s. 532-549, 2024

• DOI för The 2023 Report on the Proteome from the HUPO Human Proteome Project

Transcriptomics resources of human tissues and organs

Uhlen, Mathias; Hallstrom, Bjorn M.; Lindskog Bergström, Cecilia; Mardinoglu, Adil et al.

Ingår i Molecular Systems Biology, 2016

• DOI för Transcriptomics resources of human tissues and organs
• Ladda ner fulltext (pdf) av Transcriptomics resources of human tissues and organs

Immunohistochemistry-based prognostic biomarkers in NSCLC: novel findings on the road to clinical use?

Lindskog, Cecilia; Edlund, Karolina; Mattsson, Johanna Sofia Margareta; Micke, Patrick

Ingår i Expert Review of Molecular Diagnostics, s. 471-490, 2015

• DOI för Immunohistochemistry-based prognostic biomarkers in NSCLC: novel findings on the road to clinical use?

Garbage in, garbage out: A critical evaluation of strategies used for validation of immunohistochemical biomarkers

O'Hurley, Gillian; Sjöstedt, Evelina; Rahman, Arman; Li, Bo et al.

Ingår i Molecular Oncology, s. 783-798, 2014

• DOI för Garbage in, garbage out: A critical evaluation of strategies used for validation of immunohistochemical biomarkers

Tissue Microarrays for Analysis of Expression Patterns

Lindskog Bergström, Cecilia

2013

• Ladda ner fulltext (pdf) av Tissue Microarrays for Analysis of Expression Patterns

The Human Protein Atlas and Antibody-Based Tissue Profiling in Clinical Proteomics

Katona, Borbala; Lindskog, Cecilia

Ingår i Clinical Proteomics, s. 191-206, Humana Press, 2022

• DOI för The Human Protein Atlas and Antibody-Based Tissue Profiling in Clinical Proteomics

Antibody Validation for Estrogen Receptor Beta

Birgersson, Madeleine; Katona, Borbala; Lindskog, Cecilia; Pontén, Fredrik et al.

Ingår i Estrogen Receptors. Methods in Molecular Biology, s. 1-23, Springer Nature, 2022

• DOI för Antibody Validation for Estrogen Receptor Beta

Estimating Uncertainty in Deep Learning for Reporting Confidence: An Application on Cell Type Prediction in Testes Based on Proteomics

Ghoshal, Biraja; Lindskog, Cecilia; Tucker, Allan

Ingår i Advances In Intelligent Data Analysis XVIII, IDA 2020, s. 223-234, 2020

• DOI för Estimating Uncertainty in Deep Learning for Reporting Confidence: An Application on Cell Type Prediction in Testes Based on Proteomics
• Ladda ner fulltext (pdf) av Estimating Uncertainty in Deep Learning for Reporting Confidence: An Application on Cell Type Prediction in Testes Based on Proteomics

Somatostatin receptor expression, mTOR pathway activation and BRAFV600E mutational status in glioneuronal tumours of childhood

Ehrstedt, Christoffer; Ahlsten, Gunnar; Strömberg, Bo; Lindskog, C et al.

Extending the immune phenotypes of lung cancer: Oasis in the desert

Backman, Max; La Fleur, Linnea; Kurppa, Pinja; Djureinovic, Dijana et al.

Targeting SOX2 in glioblastoma cells reveals heterogeneity in SOX2 dependency

Dalmo, Erika; Rosén, Gabriela; Niklasson, Mia; Bergström, Tobias et al.

Lead compound identification from first-in-class high affinity Affibody molecules binders towards DGCR2

Cheung, Pierre; Persson, Jonas; Zhang, Bo; Khalil, Amina et al.