Publikationer

A Gene Transfer Agent and a Dynamic Repertoire of Secretion Systems Hold the Keys to the Explosive Radiation of the Emerging Pathogen Bartonella

Guy, Lionel; Nystedt, Björn; Toft, Christina; Zaremba-Niedzwiedzka, Katarzyna et al.

Ingår i PLOS Genetics, 2013

• DOI för A Gene Transfer Agent and a Dynamic Repertoire of Secretion Systems Hold the Keys to the Explosive Radiation of the Emerging Pathogen Bartonella
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A genome-wide study of recombination rate variation in Bartonella henselae

Guy, Lionel; Nystedt, Björn; Sun, Yu; Näslund, Kristina et al.

Ingår i BMC Evolutionary Biology, s. 65, 2012

• DOI för A genome-wide study of recombination rate variation in Bartonella henselae
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Adaptive Mutations and Replacements of Virulence Traits in the Escherichia coli O104:H4 Outbreak Population

Guy, Lionel; Jernberg, Cecilia; Norling, Jenny Arven; Ivarsson, Sofie et al.

Ingår i PLOS ONE, 2013

• DOI för Adaptive Mutations and Replacements of Virulence Traits in the Escherichia coli O104:H4 Outbreak Population
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Asgard archaea are the closest prokaryotic relatives of eukaryotes

Spang, Anja; Eme, Laura; Saw, Jimmy H.; Fernández Cáceres, Eva et al.

Ingår i PLOS Genetics, 2018

• DOI för Asgard archaea are the closest prokaryotic relatives of eukaryotes
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Chlamydia psittaci in Fulmars on The Faroe Islands: A Causative Link to South American Psittacines Eight Decades After a Severe Epidemic

Wang, Helen; Jensen, Jens-Kjeld; Olsson, Anna; Vorimore, Fabien et al.

Ingår i Microbes and infection, s. 356-359, 2020

• DOI för Chlamydia psittaci in Fulmars on The Faroe Islands: A Causative Link to South American Psittacines Eight Decades After a Severe Epidemic
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Chromosomal Location Determines the Rate of Intrachromosomal Homologous Recombination in Salmonella

Garmendia, Eva; Brandis, Gerrit; Guy, Lionel; Cao, Sha et al.

Ingår i mBio, 2021

• DOI för Chromosomal Location Determines the Rate of Intrachromosomal Homologous Recombination in Salmonella
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Close Encounters of the Third Domain: The Emerging Genomic View of Archaeal Diversity and Evolution

Spang, Anja; Martijn, Joran; Saw, Jimmy Hser Wah; Lind, Anders E. et al.

Ingår i Archaea, s. 202358, 2013

• DOI för Close Encounters of the Third Domain: The Emerging Genomic View of Archaeal Diversity and Evolution

Community-wide plasmid gene mobilization and selection

Sentchilo, Vladimir; Mayer, Antonia P.; Guy, Lionel; Miyazaki, Ryo et al.

Ingår i The ISME Journal, s. 1173-1186, 2013

• DOI för Community-wide plasmid gene mobilization and selection
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Complex archaea that bridge the gap between prokaryotes and eukaryotes

Spang, Anja; Saw, Jimmy H.; Jorgensen, Steffen L.; Zaremba-Niedzwiedzka, Katarzyna et al.

Ingår i Nature, s. 173-179, 2015

• DOI för Complex archaea that bridge the gap between prokaryotes and eukaryotes

Deep mitochondrial origin outside the sampled alphaproteobacteria

Martijn, Joran; Vosseberg, Julian; Guy, Lionel; Offre, Pierre et al.

Ingår i Nature, s. 101-105, 2018

• DOI för Deep mitochondrial origin outside the sampled alphaproteobacteria

Early divergence of translation initiation and elongation factors

Fer, Evrim; McGrath, Kaitlyn M.; Guy, Lionel; Hockenberry, Adam J. et al.

Ingår i Protein Science, 2022

• DOI för Early divergence of translation initiation and elongation factors
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Experimental Determination and Prediction of the Fitness Effects of Random Point Mutations in the Biosynthetic Enzyme HisA

Lundin, Erik; Tang, Po-Cheng; Guy, Lionel; Näsvall, Joakim et al.

Ingår i Molecular biology and evolution, s. 704-718, 2018

• DOI för Experimental Determination and Prediction of the Fitness Effects of Random Point Mutations in the Biosynthetic Enzyme HisA
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Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes

Saw, Jimmy H.; Spang, Anja; Zaremba-Niedzwiedzka, Katarzyna; Juzokaite, Lina et al.

Ingår i Philosophical Transactions of the Royal Society of London. Biological Sciences, 2015

• DOI för Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes

Expression of the qepA1 gene is induced under antibiotic exposure

Brandis, Gerrit; Gockel, Jonas; Garoff, Linnéa; Guy, Lionel et al.

Ingår i Journal of Antimicrobial Chemotherapy, s. 1433-1440, 2021

• DOI för Expression of the qepA1 gene is induced under antibiotic exposure
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Genomes of two archaeal endosymbionts show convergent adaptations to an intracellular lifestyle.

Lind, Anders E.; Lewis, William H; Spang, Anja; Guy, Lionel et al.

Ingår i The ISME Journal, s. 2655-2667, 2018

• DOI för Genomes of two archaeal endosymbionts show convergent adaptations to an intracellular lifestyle.

Genomic diversity of the 2011 European outbreaks of Escherichia coli O104:H4

Guy, Lionel; Jernberg, Cecilia; Ivarsson, Sofie; Hedenstrom, Ingela et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2012

• DOI för Genomic diversity of the 2011 European outbreaks of Escherichia coli O104:H4

Genomic insights into two independent events of archaeal endosymbiosis

Lind, Anders E; Lewis, William H; Spang, Anja; Guy, Lionel et al.

genoPlotR: comparative gene and genome visualization in R

Guy, Lionel; Roat Kultima, Jens; Andersson, Siv G.E.

Ingår i Bioinformatics, s. 2334-2335, 2010

• DOI för genoPlotR: comparative gene and genome visualization in R
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'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum

Guy, Lionel; Spang, Anja; Saw, Jimmy Hser Wah; Ettema, Thijs J. G.

Ingår i The ISME Journal, s. 1353-1357, 2014

• DOI för 'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum

Heimdallarchaea encodes profilin with eukaryotic-like actin regulation and polyproline binding

Survery, Sabeen; Hurtig, Fredrik; Haq, Syed Razaul; Eriksson, Jens et al.

Ingår i Communications Biology, 2021

• DOI för Heimdallarchaea encodes profilin with eukaryotic-like actin regulation and polyproline binding
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High-efficiency transfection of Acanthamoeba castellanii using a cationic polymer

Moreno, Anaísa B.; Ek, Viktor; Eriksson, Jens; Sellin, Mikael E. et al.

Ingår i Cell Reports Methods, 2026

• DOI för High-efficiency transfection of Acanthamoeba castellanii using a cationic polymer
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Host Adaptation in Legionellales Is 1.9 Ga, Coincident with Eukaryogenesis

Hugoson, Eric; Guliaev, Andrei; Ammunét, Tea; Guy, Lionel

Ingår i Molecular biology and evolution, 2022

• DOI för Host Adaptation in Legionellales Is 1.9 Ga, Coincident with Eukaryogenesis
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Host–bacteria interactions: ecological and evolutionary insights from ancient, professional endosymbionts

Bontemps, Zélia; Paranjape, Kiran; Guy, Lionel

Ingår i FEMS Microbiology Reviews, 2024

• DOI för Host–bacteria interactions: ecological and evolutionary insights from ancient, professional endosymbionts
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Host-Specific Adaptation of Legionella pneumophila to Single and Multiple Hosts

Moreno, Anaísa B.; Paranjape, Kiran; Cederblom, Martina; Kay, Elisabeth et al.

Ingår i Molecular biology and evolution, 2025

• DOI för Host-Specific Adaptation of Legionella pneumophila to Single and Multiple Hosts
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Legionella pneumophila recurrently isolated in a Spanish hospital: Two years of antimicrobial resistance surveillance

Graells, Tiscar; Hernández-García, Marta; Pérez-Jové, Josefa; Guy, Lionel et al.

Ingår i Environmental Research, s. 638-646, 2018

• DOI för Legionella pneumophila recurrently isolated in a Spanish hospital: Two years of antimicrobial resistance surveillance

Machine learning detection of heteroresistance in Escherichia coli

Guliaev, Andrei; Hjort, Karin; Rossi, Michele; Jonsson, Sofia et al.

Ingår i EBioMedicine, 2025

• DOI för Machine learning detection of heteroresistance in Escherichia coli
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miComplete: weighted quality evaluation of assembled microbial genomes

Hugoson, Eric; Lam, Wai Tin; Guy, Lionel

Ingår i Bioinformatics, s. 936-937, 2020

• DOI för miComplete: weighted quality evaluation of assembled microbial genomes
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Molecular Characterization of Multidrug-Resistant Yersinia enterocolitica From Foodborne Outbreaks in Sweden

Karlsson, Philip A.; Tano, Eva; Jernberg, Cecilia; Hickman, Rachel A. et al.

Ingår i Frontiers in Microbiology, 2021

• DOI för Molecular Characterization of Multidrug-Resistant Yersinia enterocolitica From Foodborne Outbreaks in Sweden
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M-protein and other intrinsic virulence factors of Streptococcus pyogenes are encoded on an ancient pathogenicity island

Panchaud, Alexandre; Guy, Lionel; Collyn, François; Haenni, Marisa et al.

Ingår i BMC Genomics, 2009

• DOI för M-protein and other intrinsic virulence factors of Streptococcus pyogenes are encoded on an ancient pathogenicity island
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Origin and evolution of key enzymes in the anammox pathway revisited

Hägglund, Emil; Jimenez-Gonzalez, Alejandro; Hagström, Erik; Björkholm, Patrik et al.

Ingår i Genome Biology and Evolution, 2026

• DOI för Origin and evolution of key enzymes in the anammox pathway revisited
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Origin and evolution of the Bartonella Gene Transfer Agent

Tamarit, Daniel; Neuvonen, Minna M.; Engel, Philipp; Guy, Lionel et al.

Ingår i Molecular biology and evolution, s. 451-464, 2018

• DOI för Origin and evolution of the Bartonella Gene Transfer Agent
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Paralogization and New Protein Architectures in Planctomycetes Bacteria with Complex Cell Structures

Mahajan, Mayank; Yee, Benjamin; Hägglund, Emil; Guy, Lionel et al.

Ingår i Molecular biology and evolution, s. 1020-1040, 2020

• DOI för Paralogization and New Protein Architectures in Planctomycetes Bacteria with Complex Cell Structures

Phylogenetic affiliation of mitochondria with Alpha-II and Rickettsiales is an artefact

Martijn, Joran; Vosseberg, Julian; Guy, Lionel; Offre, Pierre et al.

Ingår i Nature Ecology & Evolution, s. 1829-1831, 2022

• DOI för Phylogenetic affiliation of mitochondria with Alpha-II and Rickettsiales is an artefact

Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota

Odelgard, Anna; Hägglund, Emil; Guy, Lionel; Andersson, Siv G. E.

Ingår i Genome Biology and Evolution, 2024

• DOI för Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota
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phyloSkeleton: taxon selection, data retrieval and marker identification for phylogenomics

Guy, Lionel

Ingår i Bioinformatics, s. 1230-1232, 2017

• DOI för phyloSkeleton: taxon selection, data retrieval and marker identification for phylogenomics
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Proposal of Coetzeea brasiliensis gen. nov. sp. nov. isolated from larvae of Anopheles darlingi

Kämpfer, Peter; Glaeser, Stefanie P; Marinotti, Osvaldo; Guy, Lionel et al.

Ingår i International Journal of Systematic and Evolutionary Microbiology, s. 5211-5217, 2016

• DOI för Proposal of Coetzeea brasiliensis gen. nov. sp. nov. isolated from larvae of Anopheles darlingi

Proposal of Thorsellia kenyensis sp. nov. and Thorsellia kandunguensis sp. nov., isolated from the larvae of Anopheles arabiensis as members of the family Thorselliaceae fam. nov.

Kämpfer, Peter; Glaeser, Stefanie P.; Nilsson, Louise K. J.; Eberhard, Thomas et al.

Ingår i International Journal of Systematic and Evolutionary Microbiology, s. 444-451, 2015

• DOI för Proposal of Thorsellia kenyensis sp. nov. and Thorsellia kandunguensis sp. nov., isolated from the larvae of Anopheles arabiensis as members of the family Thorselliaceae fam. nov.

Rapid adaptations of Legionella pneumophila to the human host

Leenheer, Daniël; Moreno, Anaísa B.; Paranjape, Kiran; Murray, Susan et al.

Ingår i Microbial Genomics, 2023

• DOI för Rapid adaptations of Legionella pneumophila to the human host
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Resurrecting ancestral genes in bacteria to interpret ancient biosignatures

Kacar, Betul; Guy, Lionel; Smith, Eric; Baross, John

Ingår i Philosophical Transactions. Series A, 2017

• DOI för Resurrecting ancestral genes in bacteria to interpret ancient biosignatures
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Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution

Martijn, Joran; Schulz, Frederik; Zaremba-Niedzwiedzka, Katarzyna; Viklund, Johan et al.

Ingår i The ISME Journal, s. 2373-2385, 2015

• DOI för Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution

TADA: Taxonomy-Aware Dataset Aggregator

Hägglund, Emil; Andersson, Siv; Guy, Lionel

Ingår i Bioinformatics, 2023

• DOI för TADA: Taxonomy-Aware Dataset Aggregator
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The all-intracellular order Legionellales is unexpectedly diverse, globally distributed and lowly abundant.

Graells, Tiscar; Ishak, Helena; Larsson, Madeleine; Guy, Lionel

Ingår i FEMS Microbiology Ecology, 2018

• DOI för The all-intracellular order Legionellales is unexpectedly diverse, globally distributed and lowly abundant.
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The Archaeal Legacy of Eukaryotes: A Phylogenomic Perspective

Guy, Lionel; Saw, Jimmy Hser Wah; Ettema, Thijs J. G.

Ingår i Cold Spring Harbor Perspectives in Biology, 2014

• DOI för The Archaeal Legacy of Eukaryotes: A Phylogenomic Perspective

The archaeal ‘TACK’ superphylum and the origin of eukaryotes

Guy, Lionel; Ettema, Thijs J. G.

Ingår i Trends in Microbiology, s. 580-587, 2011

• DOI för The archaeal ‘TACK’ superphylum and the origin of eukaryotes

The evolution of intramitochondriality in Midichloria bacteria

Floriano, Anna Maria; Batisti Biffignandi, Gherard; Castelli, Michele; Olivieri, Emanuela et al.

Ingår i Environmental Microbiology, s. 2102-2117, 2023

• DOI för The evolution of intramitochondriality in Midichloria bacteria

The genome of Rhizobiales bacteria in predatory ants reveals urease gene functions but no genes for nitrogen fixation

Neuvonen, Minna M.; Tamarit, Daniel; Näslund, Kristina; Liebig, Juergen et al.

Ingår i Scientific Reports, s. 1-11, 2016

• DOI för The genome of Rhizobiales bacteria in predatory ants reveals urease gene functions but no genes for nitrogen fixation
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